Clone IP02509 Report

Search the DGRC for IP02509

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:25
Well:9
Vector:pOT2
Associated Gene/TranscriptClp-RA
Protein status:IP02509.pep: gold
Preliminary Size:1246
Sequenced Size:1256

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3642 2005-01-01 Successful iPCR screen
Clp 2008-04-29 Release 5.5 accounting
Clp 2008-08-15 Release 5.9 accounting
Clp 2008-12-18 5.12 accounting

Clone Sequence Records

IP02509.complete Sequence

1256 bp (1256 high quality bases) assembled on 2006-03-22

GenBank Submission: BT025009

> IP02509.complete
TCGCACTGAAACAACAAACACGCGCAAAAAAAGAAGAAGGAAACTGCATT
GTTTACCAGATTTCGGAGTTTTTCCTCATCTATCCGAGCATCCGCGAACC
GTCAGAGATGGACATCCTTTTGGCCAACGTAAGTGGGCTGCAGTTCAAGG
CGGAGCGGGACCTCATCGAGCAGGTGGGTGCCATCCCGCTGCCGTTCTAC
GGCATGGACAAGTCCATTGCGGCGGTCTGCAACTTCATCACCAGGAACGG
ACAGGAGTGCGACAAAGGGAGCGCCTGTCCCTTCCGACACATTCGCGGGG
ACCGGACGATCGTGTGCAAGCACTGGCTGAGAGGACTGTGCAAGAAGGGC
GACCAGTGCGAGTTCCTGCACGAGTACGACATGACCAAGATGCCCGAGTG
CTACTTCTACTCGAGGTTCAACGCCTGCCACAACAAAGAGTGTCCCTTTT
TGCACATCGACCCGCAGAGCAAGGTGAAGGATTGTCCGTGGTACAAGAGA
GGCTTCTGCCGCCACGGTCCCCACTGCCGGCACCAGCATCTGCGCCGTGT
CCTGTGCATGGACTACCTAGCCGGCTTCTGCCCCGAGGGCCCGTCCTGCA
AGCACATGCATCCGCACTTCGAGCTGCCCCCGCTGGCGGAACTGGGTAAG
GATCAGCTGCACAAGAAACTGCCCACGTGCCACTATTGCGGCGAGCTGGG
CCACAAGGCCAACTCGTGCAAGCAGTATGTGGGCAGCCTGGAGCATCGCA
ACAATATCAACGCAATGGATCACTCCGGCGGACACTCGGGCGGCTACTCT
GGACACTCCGGCCACATCGAGGGTGCCGATGACATGCAATCCAATCACCA
CAGTCAGCCGCATGGTCCCGGCTTCGTCAAGGTGCCCACGCCCCTGGAGG
AGATCACCTGCTACAAGTGCGGGAACAAGGGCCACTACGCGAACAAGTGT
CCCAAGGGTCACCTCGCCTTCCTCTCTAACCAACATAGTCATAAGTAGGA
CGCTCTGCTCTGTATGATTAGACTGTAAGAGTGCAGAAATAAAGGTCGAA
AGCGGTCTGCATAGTCCGCTGTGTAGTCCAGAGGTCGTAGGTTCCCAACT
TCCGCAGGCGAACGTTTCAATCATTCTGTGTTTAAAGTGTATGTTAAGAA
ACTCATTTGCATTTTTGAAAAAAGTCCCTAGAACTGCCAGTAGAACGTAT
TGTGTTATCAGCGAAATAAACTTCCATAAGATACAAGTAAAAAAAAAAAA
AAAAAA

IP02509.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:40:46
Subject Length Description Subject Range Query Range Score Percent Strand
Clp-RA 1246 Clp-RA 8..1246 1..1238 6155 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 11:38:26
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 819842..821080 1..1238 6130 99.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:34:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 11:38:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 819971..821211 1..1240 6155 99.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:30:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 819971..821211 1..1240 6165 99.9 Plus
Blast to na_te.dros performed 2019-03-15 11:38:25
Subject Length Description Subject Range Query Range Score Percent Strand
P-element 2907 P-element PPI251 2907bp AKA(V01520,X69493) Derived from X06779 (g58305) (Rel. 49, Last updated, Version 8). 1052..1149 18..114 120 61.4 Plus

IP02509.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 11:39:04 Download gff for IP02509.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 819842..821080 1..1238 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:17:46 Download gff for IP02509.complete
Subject Subject Range Query Range Percent Splice Strand
Clp-RA 1..891 108..998 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:07:39 Download gff for IP02509.complete
Subject Subject Range Query Range Percent Splice Strand
Clp-RA 1..891 108..998 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:32:03 Download gff for IP02509.complete
Subject Subject Range Query Range Percent Splice Strand
Clp-RA 1..891 108..998 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:52:35 Download gff for IP02509.complete
Subject Subject Range Query Range Percent Splice Strand
Clp-RA 1..891 108..998 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:40:26 Download gff for IP02509.complete
Subject Subject Range Query Range Percent Splice Strand
Clp-RA 1..891 108..998 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:57:55 Download gff for IP02509.complete
Subject Subject Range Query Range Percent Splice Strand
Clp-RA 8..1246 1..1238 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:07:39 Download gff for IP02509.complete
Subject Subject Range Query Range Percent Splice Strand
Clp-RA 8..1246 1..1238 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:32:03 Download gff for IP02509.complete
Subject Subject Range Query Range Percent Splice Strand
Clp-RA 8..1246 1..1238 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:52:35 Download gff for IP02509.complete
Subject Subject Range Query Range Percent Splice Strand
Clp-RA 8..1246 1..1238 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:40:26 Download gff for IP02509.complete
Subject Subject Range Query Range Percent Splice Strand
Clp-RA 8..1246 1..1238 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:39:04 Download gff for IP02509.complete
Subject Subject Range Query Range Percent Splice Strand
2L 819971..821209 1..1238 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:39:04 Download gff for IP02509.complete
Subject Subject Range Query Range Percent Splice Strand
2L 819971..821209 1..1238 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:39:04 Download gff for IP02509.complete
Subject Subject Range Query Range Percent Splice Strand
2L 819971..821209 1..1238 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:32:03 Download gff for IP02509.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 819971..821209 1..1238 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:27:32 Download gff for IP02509.complete
Subject Subject Range Query Range Percent Splice Strand
2L 819971..821209 1..1238 99   Plus

IP02509.pep Sequence

Translation from 107 to 997

> IP02509.pep
MDILLANVSGLQFKAERDLIEQVGAIPLPFYGMDKSIAAVCNFITRNGQE
CDKGSACPFRHIRGDRTIVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYF
YSRFNACHNKECPFLHIDPQSKVKDCPWYKRGFCRHGPHCRHQHLRRVLC
MDYLAGFCPEGPSCKHMHPHFELPPLAELGKDQLHKKLPTCHYCGELGHK
ANSCKQYVGSLEHRNNINAMDHSGGHSGGYSGHSGHIEGADDMQSNHHSQ
PHGPGFVKVPTPLEEITCYKCGNKGHYANKCPKGHLAFLSNQHSHK*

IP02509.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:07:30
Subject Length Description Subject Range Query Range Score Percent Strand
Clp-PA 296 CG3642-PA 1..296 1..296 1713 100 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 15:42:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17582-PA 282 GA17582-PA 1..280 1..296 1335 85.5 Plus

IP02509.hyp Sequence

Translation from 107 to 997

> IP02509.hyp
MDILLANVSGLQFKAERDLIEQVGAIPLPFYGMDKSIAAVCNFITRNGQE
CDKGSACPFRHIRGDRTIVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYF
YSRFNACHNKECPFLHIDPQSKVKDCPWYKRGFCRHGPHCRHQHLRRVLC
MDYLAGFCPEGPSCKHMHPHFELPPLAELGKDQLHKKLPTCHYCGELGHK
ANSCKQYVGSLEHRNNINAMDHSGGHSGGYSGHSGHIEGADDMQSNHHSQ
PHGPGFVKVPTPLEEITCYKCGNKGHYANKCPKGHLAFLSNQHSHK*

IP02509.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:50:14
Subject Length Description Subject Range Query Range Score Percent Strand
Clp-PA 296 CG3642-PA 1..296 1..296 1713 100 Plus