Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
IP02509.complete Sequence
1256 bp (1256 high quality bases) assembled on 2006-03-22
GenBank Submission: BT025009
> IP02509.complete
TCGCACTGAAACAACAAACACGCGCAAAAAAAGAAGAAGGAAACTGCATT
GTTTACCAGATTTCGGAGTTTTTCCTCATCTATCCGAGCATCCGCGAACC
GTCAGAGATGGACATCCTTTTGGCCAACGTAAGTGGGCTGCAGTTCAAGG
CGGAGCGGGACCTCATCGAGCAGGTGGGTGCCATCCCGCTGCCGTTCTAC
GGCATGGACAAGTCCATTGCGGCGGTCTGCAACTTCATCACCAGGAACGG
ACAGGAGTGCGACAAAGGGAGCGCCTGTCCCTTCCGACACATTCGCGGGG
ACCGGACGATCGTGTGCAAGCACTGGCTGAGAGGACTGTGCAAGAAGGGC
GACCAGTGCGAGTTCCTGCACGAGTACGACATGACCAAGATGCCCGAGTG
CTACTTCTACTCGAGGTTCAACGCCTGCCACAACAAAGAGTGTCCCTTTT
TGCACATCGACCCGCAGAGCAAGGTGAAGGATTGTCCGTGGTACAAGAGA
GGCTTCTGCCGCCACGGTCCCCACTGCCGGCACCAGCATCTGCGCCGTGT
CCTGTGCATGGACTACCTAGCCGGCTTCTGCCCCGAGGGCCCGTCCTGCA
AGCACATGCATCCGCACTTCGAGCTGCCCCCGCTGGCGGAACTGGGTAAG
GATCAGCTGCACAAGAAACTGCCCACGTGCCACTATTGCGGCGAGCTGGG
CCACAAGGCCAACTCGTGCAAGCAGTATGTGGGCAGCCTGGAGCATCGCA
ACAATATCAACGCAATGGATCACTCCGGCGGACACTCGGGCGGCTACTCT
GGACACTCCGGCCACATCGAGGGTGCCGATGACATGCAATCCAATCACCA
CAGTCAGCCGCATGGTCCCGGCTTCGTCAAGGTGCCCACGCCCCTGGAGG
AGATCACCTGCTACAAGTGCGGGAACAAGGGCCACTACGCGAACAAGTGT
CCCAAGGGTCACCTCGCCTTCCTCTCTAACCAACATAGTCATAAGTAGGA
CGCTCTGCTCTGTATGATTAGACTGTAAGAGTGCAGAAATAAAGGTCGAA
AGCGGTCTGCATAGTCCGCTGTGTAGTCCAGAGGTCGTAGGTTCCCAACT
TCCGCAGGCGAACGTTTCAATCATTCTGTGTTTAAAGTGTATGTTAAGAA
ACTCATTTGCATTTTTGAAAAAAGTCCCTAGAACTGCCAGTAGAACGTAT
TGTGTTATCAGCGAAATAAACTTCCATAAGATACAAGTAAAAAAAAAAAA
AAAAAA
IP02509.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 17:40:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Clp-RA | 1246 | Clp-RA | 8..1246 | 1..1238 | 6155 | 99.9 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 11:38:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2L | 23010047 | chr2L | 819842..821080 | 1..1238 | 6130 | 99.8 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:34:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 11:38:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 819971..821211 | 1..1240 | 6155 | 99.9 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:30:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 819971..821211 | 1..1240 | 6165 | 99.9 | Plus |
Blast to na_te.dros performed 2019-03-15 11:38:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
P-element | 2907 | P-element PPI251 2907bp AKA(V01520,X69493) Derived from X06779 (g58305) (Rel. 49, Last updated, Version 8). | 1052..1149 | 18..114 | 120 | 61.4 | Plus |
IP02509.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 11:39:04 Download gff for
IP02509.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2L | 819842..821080 | 1..1238 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:17:46 Download gff for
IP02509.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Clp-RA | 1..891 | 108..998 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:07:39 Download gff for
IP02509.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Clp-RA | 1..891 | 108..998 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:32:03 Download gff for
IP02509.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Clp-RA | 1..891 | 108..998 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:52:35 Download gff for
IP02509.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Clp-RA | 1..891 | 108..998 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:40:26 Download gff for
IP02509.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Clp-RA | 1..891 | 108..998 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:57:55 Download gff for
IP02509.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Clp-RA | 8..1246 | 1..1238 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:07:39 Download gff for
IP02509.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Clp-RA | 8..1246 | 1..1238 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:32:03 Download gff for
IP02509.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Clp-RA | 8..1246 | 1..1238 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:52:35 Download gff for
IP02509.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Clp-RA | 8..1246 | 1..1238 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:40:26 Download gff for
IP02509.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Clp-RA | 8..1246 | 1..1238 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:39:04 Download gff for
IP02509.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 819971..821209 | 1..1238 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:39:04 Download gff for
IP02509.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 819971..821209 | 1..1238 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:39:04 Download gff for
IP02509.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 819971..821209 | 1..1238 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:32:03 Download gff for
IP02509.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 819971..821209 | 1..1238 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:27:32 Download gff for
IP02509.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 819971..821209 | 1..1238 | 99 | | Plus |
IP02509.pep Sequence
Translation from 107 to 997
> IP02509.pep
MDILLANVSGLQFKAERDLIEQVGAIPLPFYGMDKSIAAVCNFITRNGQE
CDKGSACPFRHIRGDRTIVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYF
YSRFNACHNKECPFLHIDPQSKVKDCPWYKRGFCRHGPHCRHQHLRRVLC
MDYLAGFCPEGPSCKHMHPHFELPPLAELGKDQLHKKLPTCHYCGELGHK
ANSCKQYVGSLEHRNNINAMDHSGGHSGGYSGHSGHIEGADDMQSNHHSQ
PHGPGFVKVPTPLEEITCYKCGNKGHYANKCPKGHLAFLSNQHSHK*
IP02509.pep Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:07:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Clp-PA | 296 | CG3642-PA | 1..296 | 1..296 | 1713 | 100 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 15:42:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA17582-PA | 282 | GA17582-PA | 1..280 | 1..296 | 1335 | 85.5 | Plus |
IP02509.hyp Sequence
Translation from 107 to 997
> IP02509.hyp
MDILLANVSGLQFKAERDLIEQVGAIPLPFYGMDKSIAAVCNFITRNGQE
CDKGSACPFRHIRGDRTIVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYF
YSRFNACHNKECPFLHIDPQSKVKDCPWYKRGFCRHGPHCRHQHLRRVLC
MDYLAGFCPEGPSCKHMHPHFELPPLAELGKDQLHKKLPTCHYCGELGHK
ANSCKQYVGSLEHRNNINAMDHSGGHSGGYSGHSGHIEGADDMQSNHHSQ
PHGPGFVKVPTPLEEITCYKCGNKGHYANKCPKGHLAFLSNQHSHK*
IP02509.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:50:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Clp-PA | 296 | CG3642-PA | 1..296 | 1..296 | 1713 | 100 | Plus |