Clone IP02519 Report

Search the DGRC for IP02519

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:25
Well:19
Vector:pOT2
Associated Gene/TranscriptFcp3C-RA
Protein status:IP02519.pep: validated full length
Preliminary Size:787
Sequenced Size:2016

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4015 2005-01-01 Successful iPCR screen
Fcp3C 2008-04-29 Release 5.5 accounting
Fcp3C 2008-08-15 Release 5.9 accounting
Fcp3C 2008-12-18 5.12 accounting

Clone Sequence Records

IP02519.complete Sequence

2016 bp (2016 high quality bases) assembled on 2006-06-07

GenBank Submission: BT025893

> IP02519.complete
TGTAGATGGGGCTGCGCTGGTTCTCGTACAGCTTGATCAGATTTTCCATC
TCCTTGAAGCCCCGTGCCGGCACATATTCGGGCATTTTGGCAGTGTATGG
GATTTCTGGATTAAAAAAAACTTGGACGTCTTGAACGGCGAGTTGGCTGG
TGTACAAGTAAATTCCGATTGCGGCGATTTCGATGCGGATGGCAAACCCA
AAATTTAATTCCAATCTTATCTGGATCTTATCGCTGGGTGTTACGGATCA
CTTAGCCGTTGCTTATCGGCCATCGCTCCAGCAACTAGTATATTCACCAC
ACTGCCTGTCCAGCGAACCCACCACAGCCGGCTGTGTGTGCGTGCTGTTG
GGCGCACCGTGGTGAGTACGGCACTGTTAACCGTTTATCGAAACTCGAAT
TTTGTACTTAAATCATTTGAAGCAACGATAATTTTGACATTTTTATGGCA
TAAATCTATAGGATTGTTGAGTTTAACAAATAACAAACATTTAAAACTTC
GTTCAAGATACATATCGATAATCTGTATTTATATTTCAAATGTTGGCCGC
CCAATATTGATTGGTATTTCTGTTAAGTTCCATAAACAGCGCAAAAAATA
CTAACTTAACGAAAAACAAACCAAAAAATGAAAATTAAATTAAATCTATA
ATTAGATTAAAAACCAAAGCTTTGCTTATGTTGAAATGTTTGTTAATATT
ACCATATTATAACTTGTATAATTTGGATAATAATTGCTGTTTAATCGGCC
GTTTATTTATGTTATCCATTATGTTATTATAATCATAACAGTTTCATTGC
AGTTTGGCGGGATATTTAAAAAGATTTTGGAAAGTAGTTTAGAACGGTAA
GGTAAACTTTGTGCAGCTCAAGACACAACTTTTGGGTTTATTGATTACGC
ATAATTTTCGGAAGTAATTCTTTTTCTTTCTTCTCACTTTCCTCCAAATG
AATGAATTCCACTCGCTTTGTGTGAAAATTCTGCTTAATCAGACTTAACC
CTGACACAATTTTGCCGGTTCTCACAACTTGAACTTCGTTGGGGGCCGAC
TAAAATGGAAGACCGAAATCTTGAAAAACTGCAAGCCAAGTAAGAAAATG
GCTTATATAAAATGGATGGCGCAAAGGCAGAAGTATTCAGTGTTTCCGTA
GATACCAAGATGGGCGCCTTTAAAAATTCCCTGCTGCTGCTGACACTTTC
TGCTAGCCATCCATTTGGAGGCATCCAAGATAGTCTACAAGAAGCCGCTC
TATGGCAATAGCAACATCATCAAGGACAAGCGTATAAAGACGAAGCCCGT
CAAACTGGAAACCAGCACCATGAGCAGCACTGGTGTTGCAAGTAGCAGCA
CAACAGCCGAAGAGGATTGGCCCACGGCCGTTGAGTTTGTGATTATGACA
ACGCCCGCAAGCGAATTGGAAGCCAGCACGGAAACCATTGGTAACAATGG
CACCACCGAAACGACCGTTGGCGAGGCACCCATCATCGGATCGTCGGAAG
GATCCACACGATCGATGGAGCCAACCACCGCGAGTCCGCTGATGAGCACA
AACCCATCGAGCAGCAGCAGTCTGGTTAGCACCATTCCCTTGCCACCGAC
AGCGGGACTGCCTGTGCAGGATAATCAGCCAGTGCCGTGCACATGCGGCG
TCTTCCTCTCCTCGCAAATCCCAAATGGCTTGCCGACAAAGCCACTTATC
CACCAGGAATTGGATCATATGTTTCCCTGCAATGCCATCGGTCGCAAGCA
GTGTCAAACCAAATGCCTAGAGACGATCGTACAACATCTGCCGAATTCCG
CAAATATAGTATGCTCCGCACTGGGTCACGATTGTCACAAGGAACGGGCC
TATTTGTTCATCAAGAACTGTCACAATCAATGGGTTAATACCAATCTGCA
GGCGGGCAGGGAGTACTGTTGTCGCTCTGGCGTTCCCTACCGTTGCCCAT
TGATGGGTTAAGCACTGTGCAAATGAAATAAATATATGATATGACAAAAA
AAAAAAAAAAAAAAAA

IP02519.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:13:58
Subject Length Description Subject Range Query Range Score Percent Strand
Fcp3C-RA 2062 Fcp3C-RA 25..2022 1..1999 9955 99.9 Plus
CG3939-RA 980 CG3939-RA 206..480 275..1 1375 100 Minus
CG3939-RA 980 CG3939-RA 1..113 387..275 565 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:56:34
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 3068016..3068907 1164..275 4275 98.9 Minus
chrX 22417052 chrX 3067342..3067953 1775..1163 3015 99.8 Minus
chrX 22417052 chrX 3069000..3069274 275..1 1330 98.9 Minus
chrX 22417052 chrX 3067050..3067270 1995..1775 1105 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:34:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:56:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3174342..3175231 1164..275 4450 100 Minus
X 23542271 X 3173668..3174279 1775..1163 3015 99.8 Minus
X 23542271 X 3175324..3175598 275..1 1375 100 Minus
X 23542271 X 3173372..3173596 1999..1775 1125 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:07:42
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 3182440..3183329 1164..275 4450 100 Minus
X 23527363 X 3181766..3182377 1775..1163 3025 99.8 Minus
X 23527363 X 3183422..3183696 275..1 1375 100 Minus
X 23527363 X 3181470..3181694 1999..1775 1125 100 Minus
Blast to na_te.dros performed on 2019-03-16 00:56:32 has no hits.

IP02519.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:57:07 Download gff for IP02519.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 3067050..3067269 1776..1995 100 <- Minus
chrX 3067342..3067952 1164..1775 99 <- Minus
chrX 3068017..3068906 276..1163 98 <- Minus
chrX 3069000..3069274 1..275 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:17:49 Download gff for IP02519.complete
Subject Subject Range Query Range Percent Splice Strand
Fcp3C-RA 1..849 1112..1961 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:23:00 Download gff for IP02519.complete
Subject Subject Range Query Range Percent Splice Strand
Fcp3C-RA 1..849 1112..1961 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:00:20 Download gff for IP02519.complete
Subject Subject Range Query Range Percent Splice Strand
Fcp3C-RA 1..849 1112..1961 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:41:38 Download gff for IP02519.complete
Subject Subject Range Query Range Percent Splice Strand
Fcp3C-RA 1..849 1112..1961 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:18:13 Download gff for IP02519.complete
Subject Subject Range Query Range Percent Splice Strand
Fcp3C-RA 1..849 1112..1961 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:51:15 Download gff for IP02519.complete
Subject Subject Range Query Range Percent Splice Strand
Fcp3C-RA 1..1994 1..1995 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:23:00 Download gff for IP02519.complete
Subject Subject Range Query Range Percent Splice Strand
Fcp3C-RA 1..1994 1..1995 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:00:20 Download gff for IP02519.complete
Subject Subject Range Query Range Percent Splice Strand
Fcp3C-RA 1..963 1032..1995 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:41:38 Download gff for IP02519.complete
Subject Subject Range Query Range Percent Splice Strand
Fcp3C-RA 1..1994 1..1995 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:18:13 Download gff for IP02519.complete
Subject Subject Range Query Range Percent Splice Strand
Fcp3C-RA 1..963 1032..1995 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:57:07 Download gff for IP02519.complete
Subject Subject Range Query Range Percent Splice Strand
X 3175324..3175598 1..275 100   Minus
X 3173376..3173595 1776..1995 100 <- Minus
X 3173668..3174278 1164..1775 99 <- Minus
X 3174343..3175230 276..1163 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:57:07 Download gff for IP02519.complete
Subject Subject Range Query Range Percent Splice Strand
X 3175324..3175598 1..275 100   Minus
X 3173376..3173595 1776..1995 100 <- Minus
X 3173668..3174278 1164..1775 99 <- Minus
X 3174343..3175230 276..1163 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:57:07 Download gff for IP02519.complete
Subject Subject Range Query Range Percent Splice Strand
X 3175324..3175598 1..275 100   Minus
X 3173376..3173595 1776..1995 100 <- Minus
X 3173668..3174278 1164..1775 99 <- Minus
X 3174343..3175230 276..1163 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:00:20 Download gff for IP02519.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 3067409..3067628 1776..1995 100 <- Minus
arm_X 3067701..3068311 1164..1775 99 <- Minus
arm_X 3068376..3069263 276..1163 100 <- Minus
arm_X 3069357..3069631 1..275 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:51:08 Download gff for IP02519.complete
Subject Subject Range Query Range Percent Splice Strand
X 3181474..3181693 1776..1995 100 <- Minus
X 3181766..3182376 1164..1775 99 <- Minus
X 3182441..3183328 276..1163 100 <- Minus
X 3183422..3183696 1..275 100   Minus

IP02519.hyp Sequence

Translation from 1111 to 1960

> IP02519.hyp
MDGAKAEVFSVSVDTKMGAFKNSLLLLTLLLAIHLEASKIVYKKPLYGNS
NIIKDKRIKTKPVKLETSTMSSTGVASSSTTAEEDWPTAVEFVIMTTPAS
ELEASTETIGNNGTTETTVGEAPIIGSSEGSTRSMEPTTASPLMSTNPSS
SSSLVSTIPLPPTAGLPVQDNQPVPCTCGVFLSSQIPNGLPTKPLIHQEL
DHMFPCNAIGRKQCQTKCLETIVQHLPNSANIVCSALGHDCHKERAYLFI
KNCHNQWVNTNLQAGREYCCRSGVPYRCPLMG*

IP02519.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:50:26
Subject Length Description Subject Range Query Range Score Percent Strand
Fcp3C-PA 282 CG4015-PA 1..282 1..282 1478 100 Plus

IP02519.pep Sequence

Translation from 1319 to 1960

> IP02519.pep
MSSTGVASSSTTAEEDWPTAVEFVIMTTPASELEASTETIGNNGTTETTV
GEAPIIGSSEGSTRSMEPTTASPLMSTNPSSSSSLVSTIPLPPTAGLPVQ
DNQPVPCTCGVFLSSQIPNGLPTKPLIHQELDHMFPCNAIGRKQCQTKCL
ETIVQHLPNSANIVCSALGHDCHKERAYLFIKNCHNQWVNTNLQAGREYC
CRSGVPYRCPLMG*

IP02519.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:22:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19616-PA 276 GF19616-PA 70..276 14..213 718 69.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:22:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18592-PA 250 GG18592-PA 60..250 13..213 810 79.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:22:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24271-PA 282 GH24271-PA 80..282 16..213 590 60 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:17:08
Subject Length Description Subject Range Query Range Score Percent Strand
Fcp3C-PA 282 CG4015-PA 70..282 1..213 1142 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:22:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10950-PA 274 GI10950-PA 61..274 11..213 601 58.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:22:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19781-PA 261 GL19781-PA 61..261 14..213 633 64.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:23:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17864-PA 261 GA17864-PA 61..261 14..213 633 64.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:23:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18842-PA 260 GM18842-PA 64..260 13..213 902 89.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:23:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16341-PA 260 GD16341-PA 66..260 15..213 923 87.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:23:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15268-PA 274 GJ15268-PA 80..274 18..213 635 65.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:23:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10351-PA 263 GK10351-PA 63..263 10..213 622 61.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:23:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16905-PA 265 GE16905-PA 64..265 13..213 871 83.8 Plus