Clone IP02530 Report

Search the DGRC for IP02530

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:25
Well:30
Vector:pOT2
Associated Gene/Transcriptrpr-RA
Protein status:IP02530.pep: gold
Preliminary Size:851
Sequenced Size:934

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4319 2005-01-01 Successful iPCR screen
rpr 2008-04-29 Release 5.5 accounting
rpr 2008-08-15 Release 5.9 accounting
rpr 2008-12-18 5.12 accounting

Clone Sequence Records

IP02530.complete Sequence

934 bp (934 high quality bases) assembled on 2005-03-01

GenBank Submission: BT023284

> IP02530.complete
CCATCGCAGCGAACGCATCTCGAAAAAGTCATTGAATAAGAGAGACACCA
GAACAAAGTGAACGAACTCGAAAATACGAAAGCAAAGTGTGTGCGCCAGC
AACAAAGAACTAACTCGATAAATATTCATTGTGCAGAAGAGAAAGTTATT
GAGTCACTACCAGTTGTGTAATTCCGAACCAGAAGAAAGATAAACCAACA
ATGGCAGTGGCATTCTACATACCCGATCAGGCGACTCTGTTGCGGGAGGC
GGAGCAGAAGGAGCAGCAGATCCTTCGCTTGCGGGAGTCACAGTGGAGAT
TCCTGGCCACCGTCGTCCTGGAAACCCTGCGCCAGTACACTTCATGTCAT
CCGAAGACCGGAAGAAAGTCCGGCAAATATCGCAAGCCATCGCAATGAGG
ATTCGAGTAACTAACGAATACGGGGAAAACCAATAGTCCAGTCCAAAATC
CAGAGTACAAAGGAAATAAGCATGAGCCAACCCAAAACCCAAAACAGTCA
CCACTCATCAGCCGACGGCACTCGATTTCTACTGCAGTCAAGGACACAGA
GCCACAACACCCACCCAATTTTAGTTTACTCATCAAAGCGATTGTGATAA
TGGTTTTGTTTCTACAAAAAAGCGGAGGAAAAATTTGAAAAAAATAACGT
TTTTATAAAGTCCCCAATTTTTTACAAAAATGTTTTAATGATATAAATCA
ACTTTTTTAGAAATAATTTACTCTTAAAGCCTATTTAAATGAATTACTAC
TGTAATAGTTTGTAAGTTCTTTTGTAAGACGAGTTTTTCTAAGTTTTTTT
TAAGAAGAAACCCCAGAAAAAAACGAAGATGAGTCGAAGTTGGCTAAAAA
TTGCATCAATTTTTTGTCAAACAAAAAGTCAATAAAACAAAAACGAAAAC
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

IP02530.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:54:12
Subject Length Description Subject Range Query Range Score Percent Strand
rpr-RA 851 rpr-RA 1..851 33..883 4120 99.2 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:30:10
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 18387157..18388059 901..1 4205 98.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:34:48 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:30:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18397528..18398435 908..1 4355 99.1 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:43:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 18390628..18391535 908..1 4375 99.1 Minus
Blast to na_te.dros performed on 2019-03-15 21:30:08 has no hits.

IP02530.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:30:49 Download gff for IP02530.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 18387178..18388059 1..880 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:17:52 Download gff for IP02530.complete
Subject Subject Range Query Range Percent Splice Strand
rpr-RA 1..198 201..398 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:26:44 Download gff for IP02530.complete
Subject Subject Range Query Range Percent Splice Strand
rpr-RA 1..198 201..398 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:50:36 Download gff for IP02530.complete
Subject Subject Range Query Range Percent Splice Strand
rpr-RA 1..198 201..398 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:10:49 Download gff for IP02530.complete
Subject Subject Range Query Range Percent Splice Strand
rpr-RA 1..198 201..398 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:55:46 Download gff for IP02530.complete
Subject Subject Range Query Range Percent Splice Strand
rpr-RA 1..198 201..398 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:29:43 Download gff for IP02530.complete
Subject Subject Range Query Range Percent Splice Strand
rpr-RA 1..848 33..880 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:26:44 Download gff for IP02530.complete
Subject Subject Range Query Range Percent Splice Strand
rpr-RA 1..848 33..880 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:50:36 Download gff for IP02530.complete
Subject Subject Range Query Range Percent Splice Strand
rpr-RA 1..880 1..880 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:10:49 Download gff for IP02530.complete
Subject Subject Range Query Range Percent Splice Strand
rpr-RA 1..848 33..880 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:55:46 Download gff for IP02530.complete
Subject Subject Range Query Range Percent Splice Strand
rpr-RA 1..880 1..880 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:30:49 Download gff for IP02530.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18397556..18398435 1..880 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:30:49 Download gff for IP02530.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18397556..18398435 1..880 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:30:49 Download gff for IP02530.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18397556..18398435 1..880 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:50:36 Download gff for IP02530.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18390656..18391535 1..880 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:47:18 Download gff for IP02530.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18390656..18391535 1..880 99   Minus

IP02530.hyp Sequence

Translation from 200 to 397

> IP02530.hyp
MAVAFYIPDQATLLREAEQKEQQILRLRESQWRFLATVVLETLRQYTSCH
PKTGRKSGKYRKPSQ*

IP02530.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:50:39
Subject Length Description Subject Range Query Range Score Percent Strand
rpr-PA 65 CG4319-PA 1..65 1..65 334 100 Plus

IP02530.pep Sequence

Translation from 200 to 397

> IP02530.pep
MAVAFYIPDQATLLREAEQKEQQILRLRESQWRFLATVVLETLRQYTSCH
PKTGRKSGKYRKPSQ*

IP02530.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:20:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10821-PA 65 GF10821-PA 1..65 1..65 303 87.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:20:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15745-PA 65 GG15745-PA 1..65 1..65 321 93.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:21:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17114-PA 67 GH17114-PA 1..67 1..65 177 57.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:42:08
Subject Length Description Subject Range Query Range Score Percent Strand
rpr-PA 65 CG4319-PA 1..65 1..65 334 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:21:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11719-PA 67 GI11719-PA 1..67 1..65 181 57.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:21:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22708-PA 72 GL22708-PA 1..72 1..65 255 72.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:21:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18104-PA 72 GA18104-PA 1..72 1..65 255 72.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:21:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14944-PA 65 GM14944-PA 1..65 1..65 324 93.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:21:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12346-PA 65 GD12346-PA 1..65 1..65 328 95.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:21:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11393-PA 67 GJ11393-PA 1..67 1..65 183 57.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:21:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19143-PA 70 GK19143-PA 1..70 1..65 266 75.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:21:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22077-PA 65 GE22077-PA 1..65 1..65 318 92.3 Plus