Clone IP02538 Report

Search the DGRC for IP02538

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:25
Well:38
Vector:pOT2
Associated Gene/TranscriptGstD8-RA
Protein status:IP02538.pep: gold
Preliminary Size:639
Sequenced Size:811

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4421 2005-01-01 Successful iPCR screen
GstD8 2008-04-29 Release 5.5 accounting
GstD8 2008-08-15 Release 5.9 accounting
GstD8 2008-12-18 5.12 accounting

Clone Sequence Records

IP02538.complete Sequence

811 bp (811 high quality bases) assembled on 2006-04-13

GenBank Submission: BT025158

> IP02538.complete
AGGACCTTTCATCATGGACTTTTACTACCATCCTTGCTCGGCTCCTTGCC
GCTCCGTTATAATGACAGCCAAGGCCCTTGGAGTTGACCTGAATATGAAG
CTATTGAAGGTCATGGACGGGGAGCAACTGAAGCCGGAGTTTGTGAAGCT
CAATCCACAGCACTGCATTCCCACCCTGGTGGACGATGGCTTCTCCATCT
GGGAATCCCGTGCCATTTTGATTTACTTGGTGGAGAAGTACGGCGCTGAT
GACTCGCTGTATCCCAGCGATCCCCAGAAGAAGGCTGTGGTCAATCAGAG
GCTCTACTTCGACATGGGCACCCTGTTTCAGAGTTTCGTCGAGGCCATCT
ATCCACAGATAAGGAATAATCATCCCGCCGATCCAGAGGCCATGCAGAAA
GTGGACAGCGCCTTTGGCCACCTGGACACCTTCCTGGAGGACCAGGAGTA
TGTGGCTGGCGACTGCCTCACCATTGCCGACATTGCCCTGTTGGCCTCCG
TTTCCACCTTTGAGGTGGTGGACTTCGATATAGCCCAGTATCCAAATGTG
GCCAGGTGGTACGAGAATGCCAAGGAAGTGACTCCCGGTTGGGAAGAGAA
CTGGGACGGTGTACAGCTAATCAAGAAACTTGTCCAGGAGAGGAATGAAT
GATTTGATGAGAATGTCTGCAGTAAATGCCCAACATACCACATACCTCGG
CAAATTATTGCCAAACATGGTTATATTGTATTGTAGTTAAACAAATAAAT
CGCATTGTTATGAGCACCGTGATAATAAATTATTATCTCAAACAAAAAAA
AAAAAAAAAAA

IP02538.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:28:40
Subject Length Description Subject Range Query Range Score Percent Strand
GstD8-RA 793 GstD8-RA 1..793 1..793 3965 100 Plus
GstD2-RA 734 GstD2-RA 82..230 68..216 370 83.2 Plus
GstD1-RA 828 GstD1-RA 478..666 421..609 360 79.3 Plus
GstD1-RA 828 GstD1-RA 175..301 118..244 275 81.1 Plus
GstD2-RA 734 GstD2-RA 439..501 425..487 210 88.8 Plus
GstD2-RA 734 GstD2-RA 242..340 228..326 195 79.7 Plus
GstD2-RA 734 GstD2-RA 559..620 545..606 190 87 Plus
GstD1-RA 828 GstD1-RA 74..159 17..102 145 77.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:04:26
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 8205405..8206197 1..793 3965 100 Plus
chr3R 27901430 chr3R 8193350..8193942 609..17 670 74.2 Minus
chr3R 27901430 chr3R 8197429..8197967 68..606 595 74 Plus
chr3R 27901430 chr3R 8204036..8204252 113..326 375 79.3 Plus
chr3R 27901430 chr3R 8198500..8198772 45..317 360 75.5 Plus
chr3R 27901430 chr3R 8201290..8201742 159..611 345 71.7 Plus
chr3R 27901430 chr3R 8199574..8199850 49..325 320 74.4 Plus
chr3R 27901430 chr3R 8202658..8202865 119..326 260 75 Plus
chr3R 27901430 chr3R 8190328..8190451 605..482 230 79 Minus
chr3R 27901430 chr3R 8190596..8190813 337..120 190 72.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:34:53 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:04:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12380023..12380822 1..800 3985 99.9 Plus
3R 32079331 3R 12367973..12368565 609..17 670 74.2 Minus
3R 32079331 3R 12372052..12372590 68..606 595 74 Plus
3R 32079331 3R 12375818..12376361 68..611 455 72.2 Plus
3R 32079331 3R 12378654..12378870 113..326 375 79.3 Plus
3R 32079331 3R 12373113..12373385 45..317 360 75.5 Plus
3R 32079331 3R 12374188..12374464 49..325 320 74.4 Plus
3R 32079331 3R 12377277..12377484 119..326 260 75 Plus
3R 32079331 3R 12364951..12365074 605..482 245 79.8 Minus
3R 32079331 3R 12365219..12365436 337..120 190 72.5 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:19:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 12120854..12121653 1..800 3985 99.8 Plus
3R 31820162 3R 12112883..12113031 68..216 370 83.2 Plus
3R 31820162 3R 12108804..12108992 609..421 360 79.3 Minus
3R 31820162 3R 12114018..12114216 119..317 350 78.3 Plus
3R 31820162 3R 12116649..12116798 68..217 300 80 Plus
3R 31820162 3R 12109169..12109295 244..118 275 81.1 Minus
3R 31820162 3R 12118108..12118315 119..326 260 75 Plus
3R 31820162 3R 12105782..12105905 605..482 245 79.8 Minus
3R 31820162 3R 12115089..12115186 119..216 235 82.6 Plus
3R 31820162 3R 12119485..12119588 113..216 235 81.7 Plus
3R 31820162 3R 12119635..12119701 260..326 215 88 Plus
3R 31820162 3R 12113240..12113302 425..487 210 88.8 Plus
3R 31820162 3R 12117118..12117192 537..611 210 85.3 Plus
3R 31820162 3R 12113043..12113141 228..326 195 79.7 Plus
3R 31820162 3R 12116809..12116907 228..326 195 79.7 Plus
3R 31820162 3R 12113360..12113421 545..606 190 87 Plus
3R 31820162 3R 12107127..12107179 606..554 175 88.6 Minus
3R 31820162 3R 12115469..12115574 499..604 155 76.4 Plus
3R 31820162 3R 12115198..12115295 228..325 145 76.5 Plus
3R 31820162 3R 12109311..12109396 102..17 145 77.9 Minus
Blast to na_te.dros performed on 2019-03-15 13:04:25 has no hits.

IP02538.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:05:33 Download gff for IP02538.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 8205405..8206197 1..793 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:17:57 Download gff for IP02538.complete
Subject Subject Range Query Range Percent Splice Strand
GstD8-RA 1..639 14..652 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:50:59 Download gff for IP02538.complete
Subject Subject Range Query Range Percent Splice Strand
GstD8-RA 1..639 14..652 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:56:47 Download gff for IP02538.complete
Subject Subject Range Query Range Percent Splice Strand
GstD8-RA 1..639 14..652 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:31:40 Download gff for IP02538.complete
Subject Subject Range Query Range Percent Splice Strand
GstD8-RA 1..639 14..652 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:20:46 Download gff for IP02538.complete
Subject Subject Range Query Range Percent Splice Strand
GstD8-RA 1..639 14..652 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:24:44 Download gff for IP02538.complete
Subject Subject Range Query Range Percent Splice Strand
GstD8-RA 1..793 1..793 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:50:59 Download gff for IP02538.complete
Subject Subject Range Query Range Percent Splice Strand
GstD8-RA 1..793 1..793 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:56:47 Download gff for IP02538.complete
Subject Subject Range Query Range Percent Splice Strand
GstD8-RA 1..793 1..793 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:31:40 Download gff for IP02538.complete
Subject Subject Range Query Range Percent Splice Strand
GstD8-RA 1..793 1..793 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:20:46 Download gff for IP02538.complete
Subject Subject Range Query Range Percent Splice Strand
GstD8-RA 16..808 1..793 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:05:33 Download gff for IP02538.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12380023..12380815 1..793 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:05:33 Download gff for IP02538.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12380023..12380815 1..793 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:05:33 Download gff for IP02538.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12380023..12380815 1..793 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:56:47 Download gff for IP02538.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8205745..8206537 1..793 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:10:11 Download gff for IP02538.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12120854..12121646 1..793 100   Plus

IP02538.hyp Sequence

Translation from 0 to 651

> IP02538.hyp
GPFIMDFYYHPCSAPCRSVIMTAKALGVDLNMKLLKVMDGEQLKPEFVKL
NPQHCIPTLVDDGFSIWESRAILIYLVEKYGADDSLYPSDPQKKAVVNQR
LYFDMGTLFQSFVEAIYPQIRNNHPADPEAMQKVDSAFGHLDTFLEDQEY
VAGDCLTIADIALLASVSTFEVVDFDIAQYPNVARWYENAKEVTPGWEEN
WDGVQLIKKLVQERNE*

IP02538.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:50:50
Subject Length Description Subject Range Query Range Score Percent Strand
GstD8-PA 212 CG4421-PA 1..212 5..216 1127 100 Plus
GstD2-PA 215 CG4181-PA 1..210 5..214 772 66.2 Plus
GstD1-PB 209 CG10045-PB 1..206 4..209 763 68 Plus
GstD1-PA 209 CG10045-PA 1..206 4..209 763 68 Plus
GstD5-PA 216 CG12242-PA 1..210 5..214 745 64.8 Plus

IP02538.pep Sequence

Translation from 13 to 651

> IP02538.pep
MDFYYHPCSAPCRSVIMTAKALGVDLNMKLLKVMDGEQLKPEFVKLNPQH
CIPTLVDDGFSIWESRAILIYLVEKYGADDSLYPSDPQKKAVVNQRLYFD
MGTLFQSFVEAIYPQIRNNHPADPEAMQKVDSAFGHLDTFLEDQEYVAGD
CLTIADIALLASVSTFEVVDFDIAQYPNVARWYENAKEVTPGWEENWDGV
QLIKKLVQERNE*

IP02538.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 13:58:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17947-PA 214 GF17947-PA 1..212 1..212 917 77.8 Plus
Dana\GF17052-PA 209 GF17052-PA 2..209 1..208 792 68.8 Plus
Dana\GF17943-PA 218 GF17943-PA 1..210 1..209 766 65.2 Plus
Dana\GF17942-PA 398 GF17942-PA 184..386 6..208 726 66 Plus
Dana\GF17054-PA 210 GF17054-PA 1..206 1..205 725 62.6 Plus
Dana\GF17942-PA 398 GF17942-PA 1..184 17..201 568 54.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 13:58:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18806-PA 212 GG18806-PA 1..212 1..212 1075 92.5 Plus
Dere\GG18761-PA 215 GG18761-PA 1..211 1..211 800 67.3 Plus
Dere\GstD1-PA 209 GG17135-PA 3..209 2..208 790 68.6 Plus
Dere\GG18783-PA 216 GG18783-PA 1..210 1..210 769 63.3 Plus
Dere\GG17139-PA 210 GG17139-PA 1..206 1..205 712 61.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 13:58:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13103-PA 209 GH13103-PA 3..209 2..208 792 69.6 Plus
Dgri\GH20186-PA 209 GH20186-PA 3..209 2..208 789 69.1 Plus
Dgri\GH20559-PA 216 GH20559-PA 1..210 1..210 757 63.3 Plus
Dgri\GH17521-PA 216 GH17521-PA 1..210 1..210 756 62.9 Plus
Dgri\GH20548-PA 213 GH20548-PA 1..209 1..209 750 63.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:40:06
Subject Length Description Subject Range Query Range Score Percent Strand
GstD8-PA 212 CG4421-PA 1..212 1..212 1127 100 Plus
GstD2-PA 215 CG4181-PA 1..210 1..210 772 66.2 Plus
GstD1-PB 209 CG10045-PB 2..206 1..205 762 68.3 Plus
GstD1-PA 209 CG10045-PA 2..206 1..205 762 68.3 Plus
GstD5-PA 216 CG12242-PA 1..210 1..210 745 64.8 Plus
GstD4-PA 215 CG11512-PA 1..208 1..208 738 64.4 Plus
GstD9-PB 218 CG10091-PB 2..209 1..206 698 61.1 Plus
GstD9-PA 218 CG10091-PA 2..209 1..206 698 61.1 Plus
GstD10-PB 210 CG18548-PB 1..206 1..205 672 61.2 Plus
GstD10-PA 210 CG18548-PA 1..206 1..205 672 61.2 Plus
GstD7-PA 224 CG4371-PA 4..213 1..209 643 57.1 Plus
GstD3-PA 199 CG4381-PA 1..194 17..210 623 56.7 Plus
GstD6-PA 215 CG4423-PA 1..209 1..209 622 55 Plus
GstD11-PA 222 CG17639-PA 7..191 4..188 464 44.3 Plus
GstD11-PB 243 CG17639-PB 28..212 4..188 464 44.3 Plus
GstE3-PA 220 CG17524-PA 12..199 9..195 373 41.3 Plus
GstE6-PA 222 CG17530-PA 12..217 9..211 366 36.4 Plus
GstE11-PB 225 CG5224-PB 8..224 4..212 364 39.3 Plus
GstE11-PA 225 CG5224-PA 8..224 4..212 364 39.3 Plus
GstE7-PA 223 CG17531-PA 12..217 9..211 360 38.3 Plus
GstE2-PA 221 CG17523-PA 13..210 9..207 356 39.3 Plus
GstE4-PA 222 CG17525-PA 4..217 1..211 347 34.1 Plus
GstE10-PB 240 CG17522-PB 12..217 9..210 345 35.4 Plus
GstE10-PA 240 CG17522-PA 12..217 9..210 345 35.4 Plus
GstE8-PB 222 CG17533-PB 7..215 4..205 342 38.6 Plus
GstE8-PA 222 CG17533-PA 7..215 4..205 342 38.6 Plus
GstE1-PA 224 CG5164-PA 14..196 10..189 339 41 Plus
GstE5-PA 222 CG17527-PA 12..217 9..211 337 35.4 Plus
GstE12-PC 223 CG16936-PC 7..216 4..210 335 37.4 Plus
GstE12-PB 223 CG16936-PB 7..216 4..210 335 37.4 Plus
GstE12-PD 223 CG16936-PD 7..216 4..210 335 37.4 Plus
GstE12-PA 223 CG16936-PA 7..216 4..210 335 37.4 Plus
GstE9-PA 221 CG17534-PA 12..209 9..203 312 35.9 Plus
gfzf-PD 234 CG33546-PD 1..211 1..208 309 36 Plus
gfzf-PE 1045 CG33546-PE 812..1022 1..208 309 36 Plus
gfzf-PB 1045 CG33546-PB 812..1022 1..208 309 36 Plus
GstE13-PB 226 CG11784-PB 7..201 4..195 303 33.8 Plus
GstE13-PA 226 CG11784-PA 7..201 4..195 303 33.8 Plus
GstE14-PA 232 CG4688-PA 9..213 4..208 289 30 Plus
GstT1-PA 228 CG30000-PA 7..211 3..195 177 25.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 13:58:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22354-PA 208 GI22354-PA 1..206 1..206 791 68.9 Plus
Dmoj\GI24379-PA 209 GI24379-PA 2..206 1..205 773 66.8 Plus
Dmoj\GI23194-PA 213 GI23194-PA 1..207 1..207 767 66.7 Plus
Dmoj\GI23193-PA 214 GI23193-PA 1..210 1..212 748 62.7 Plus
Dmoj\GI23195-PA 216 GI23195-PA 1..205 1..205 718 62 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 13:58:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL27303-PA 213 GL27303-PA 1..213 1..212 891 74.6 Plus
Dper\GL27184-PA 209 GL27184-PA 3..206 2..205 786 69.6 Plus
Dper\GL27300-PA 217 GL27300-PA 1..209 1..209 779 64.1 Plus
Dper\GL27302-PA 215 GL27302-PA 1..210 1..210 717 61.9 Plus
Dper\GL27301-PA 213 GL27301-PA 1..211 1..210 709 60.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 13:58:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18171-PA 213 GA18171-PA 1..213 1..212 888 74.6 Plus
Dpse\GA10031-PA 209 GA10031-PA 3..206 2..205 786 69.6 Plus
Dpse\GA18009-PA 219 GA18009-PA 1..209 1..209 779 64.1 Plus
Dpse\GA27028-PA 215 GA27028-PA 1..210 1..210 712 61.4 Plus
Dpse\GA27027-PA 213 GA27027-PA 1..211 1..210 698 59.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 13:58:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24021-PA 212 GM24021-PA 1..212 1..212 1121 98.1 Plus
Dsec\GstD1-PA 209 GM26019-PA 3..209 2..208 789 68.6 Plus
Dsec\GM24018-PA 215 GM24018-PA 1..210 1..210 747 62.4 Plus
Dsec\GM26022-PA 210 GM26022-PA 1..206 1..205 701 61.2 Plus
Dsec\GM24017-PA 215 GM24017-PA 1..210 1..210 688 56.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 13:58:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18821-PA 212 GD18821-PA 1..212 1..212 1120 98.1 Plus
Dsim\GD18815-PA 215 GD18815-PA 1..211 1..211 797 66.4 Plus
Dsim\GstD1-PA 209 GD20577-PA 3..209 2..208 788 68.6 Plus
Dsim\GD18817-PA 215 GD18817-PA 1..208 1..208 760 63.9 Plus
Dsim\GD18818-PA 216 GD18818-PA 1..210 1..210 744 61.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 13:58:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24385-PA 209 GJ24385-PA 3..209 2..208 776 67.6 Plus
Dvir\GJ22854-PA 213 GJ22854-PA 1..205 1..205 763 67.3 Plus
Dvir\GJ22855-PA 200 GJ22855-PA 1..194 17..210 726 67.5 Plus
Dvir\GJ14446-PA 213 GJ14446-PA 1..209 1..209 722 59.3 Plus
Dvir\GJ22852-PA 214 GJ22852-PA 1..209 1..212 715 59.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 13:58:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11878-PA 212 GK11878-PA 1..207 1..208 828 68.8 Plus
Dwil\GK11874-PA 219 GK11874-PA 1..210 1..210 811 66.2 Plus
Dwil\GK11204-PA 209 GK11204-PA 3..209 2..208 799 69.1 Plus
Dwil\GK11202-PA 218 GK11202-PA 4..211 1..208 795 67.8 Plus
Dwil\GK11876-PA 215 GK11876-PA 1..210 1..210 752 64.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 13:58:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26181-PA 212 GE26181-PA 1..212 1..212 1086 93.9 Plus
Dyak\GE26175-PA 215 GE26175-PA 1..210 1..210 806 67.6 Plus
Dyak\GstD1-PA 209 GE24527-PA 3..209 2..208 780 67.6 Plus
Dyak\GE26178-PA 216 GE26178-PA 1..210 1..210 765 63.8 Plus
Dyak\GE26177-PA 215 GE26177-PA 1..208 1..208 752 63.9 Plus