Clone IP02558 Report

Search the DGRC for IP02558

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:25
Well:58
Vector:pOT2
Associated Gene/TranscriptCCAP-RA
Protein status:IP02558.pep: gold
Preliminary Size:456
Sequenced Size:1277

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4910 2005-01-01 Successful iPCR screen
Ccap 2008-04-29 Release 5.5 accounting
Ccap 2008-08-15 Release 5.9 accounting
Ccap 2008-12-18 5.12 accounting

Clone Sequence Records

IP02558.complete Sequence

1277 bp (1277 high quality bases) assembled on 2006-01-24

GenBank Submission: BT024429

> IP02558.complete
AGTAGCACGCGAACCGTTTTGGCAGAGAGTCGCCTCGAAATTGCCTCTGT
TTGTTCGGAAAAGTCTAGTGGAAGTGTGAGGAAAAGTTTCGGAAAATGCA
CACTCAAGCGCGTAGGAGCGATCTGTGAGTGTGTTCTTTCGGATATATCC
GATCGGATCGGGTCTTTATAAATAGATACAAACGCCTCAGTTCGCTCGCG
AGCGAATTATGGCCAATGCAGCTGCACTGAACGAAATTAGTGACAATTGC
GGGGGATTTTCGCCCACTTTAAGCCTGCCCAAGTTGCGTTTCAAATTGAA
TTTGCAGTGGTTTTTATTACACTCGGCAAGGGCAAGGACCATCCTTCACA
CGTCAATGCAATGTTAATGTGCGGGGGCGACCCGGCTGGGAAAGGTCGGG
AAAAACACAAAAAGCCATTAAGTGGCAACCAAAATACATTCCAGGCCCAG
CTGGTGGTCCTGTCGCCTTCTGAAAGCAACAAGTCTCACATTGCGTAGCC
GAGATGTTGACCAAGGCCCAAGCTGCGGCCACTTTCATTTGGCTTTCGAG
TGTTAAGCGCGTCGGTTGCTAAGTGGATCCTTATTAAAAAAAACACACTC
CTGCAATGAGAACGTCCATGAGGATTTCCCTGAGGCTGCTTGCACTCCTG
GCTTGTGCCATTTGCTCTCAGGCTTCGCTGGAAAGGGAGAACAACGAGGG
CACCAATATGGCAAATCACAAGCTAAGTGGCGTTATACAATGGAAGTACG
AGAAGCGACCGTTTTGCAATGCATTTACAGGCTGTGGACGAAAGCGTACG
TATCCCTCGTATCCGCCATTCTCGCTATTCAAACGCAACGAAGTCGAAGA
GAAACCCTATAACAATGAGTATTTATCCGAAGGTCTAAGTGATTTGATCG
ATATCAATGCCGAGCCAGCTGTGGAAAATGTTCAAAAGCAAATCATGTCG
CAGGCCAAAATCTTCGAGGCCATCAAAGAAGCCAGCAAGGAAATCTTTCG
GCAAAAGAACAAACAGAAAATGTTGCAAAATGAAAAGGAGATGCAGCAAT
TGGAGGAGCGCGAAAGCAAATAAATCGAAATAATCGGATAAATCGGAATT
ATCGGAATAGTCGGATTTCTGGAAAGCAAATTGACTGGACGGTTAGCACA
CTGCTTTTGTTATTGTACATACTATCTTTATCCATGACTCCTTGAATTGT
GAAGAATTCCACAGCACTGGCATTGCATTCAATAAAAATTGTTGACCTCA
AAAAAAAAAAAAAAAAAAAAAAAAAAA

IP02558.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:20:53
Subject Length Description Subject Range Query Range Score Percent Strand
Ccap-RA 1514 Ccap-RA 1..1250 1..1250 6250 100 Plus
Ccap.a 1497 Ccap.a 1..1250 1..1250 6250 100 Plus
CG6972.a 1310 CG6972.a 1..78 78..1 390 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:53:19
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 18524855..18525571 716..1 3415 98.7 Minus
chr3R 27901430 chr3R 18524070..18524537 1249..773 2110 96.6 Minus
chr3R 27901430 chr3R 18524582..18524646 781..717 325 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:35:00 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:53:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22701369..22702084 716..1 3580 100 Minus
3R 32079331 3R 22700581..22701058 1250..773 2390 100 Minus
3R 32079331 3R 22701103..22701167 781..717 325 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:13:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 22442200..22442915 716..1 3580 100 Minus
3R 31820162 3R 22441412..22441889 1250..773 2390 100 Minus
3R 31820162 3R 22441934..22441998 781..717 325 100 Minus
Blast to na_te.dros performed on 2019-03-16 14:53:17 has no hits.

IP02558.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:54:23 Download gff for IP02558.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 18524070..18524529 781..1249 96 <- Minus
chr3R 18524583..18524646 717..780 100 <- Minus
chr3R 18524855..18525571 1..716 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:18:03 Download gff for IP02558.complete
Subject Subject Range Query Range Percent Splice Strand
Ccap-RA 1..468 606..1073 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:36:43 Download gff for IP02558.complete
Subject Subject Range Query Range Percent Splice Strand
Ccap-RA 1..468 606..1073 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:38:44 Download gff for IP02558.complete
Subject Subject Range Query Range Percent Splice Strand
Ccap-RA 1..468 606..1073 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:11:29 Download gff for IP02558.complete
Subject Subject Range Query Range Percent Splice Strand
Ccap-RA 1..468 606..1073 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:37:36 Download gff for IP02558.complete
Subject Subject Range Query Range Percent Splice Strand
CCAP-RA 1..468 606..1073 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:08:25 Download gff for IP02558.complete
Subject Subject Range Query Range Percent Splice Strand
Ccap-RA 1..1249 1..1249 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:36:43 Download gff for IP02558.complete
Subject Subject Range Query Range Percent Splice Strand
Ccap-RA 1..1249 1..1249 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:38:44 Download gff for IP02558.complete
Subject Subject Range Query Range Percent Splice Strand
Ccap-RA 1..1249 1..1249 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:11:29 Download gff for IP02558.complete
Subject Subject Range Query Range Percent Splice Strand
Ccap-RA 1..1249 1..1249 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:37:36 Download gff for IP02558.complete
Subject Subject Range Query Range Percent Splice Strand
CCAP-RA 1..1249 1..1249 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:54:23 Download gff for IP02558.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22700582..22701050 781..1249 100 <- Minus
3R 22701104..22701167 717..780 100 <- Minus
3R 22701369..22702084 1..716 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:54:23 Download gff for IP02558.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22700582..22701050 781..1249 100 <- Minus
3R 22701104..22701167 717..780 100 <- Minus
3R 22701369..22702084 1..716 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:54:23 Download gff for IP02558.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22700582..22701050 781..1249 100 <- Minus
3R 22701104..22701167 717..780 100 <- Minus
3R 22701369..22702084 1..716 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:38:44 Download gff for IP02558.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18526304..18526772 781..1249 100 <- Minus
arm_3R 18526826..18526889 717..780 100 <- Minus
arm_3R 18527091..18527806 1..716 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:00:08 Download gff for IP02558.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22441413..22441881 781..1249 100 <- Minus
3R 22441935..22441998 717..780 100 <- Minus
3R 22442200..22442915 1..716 100   Minus

IP02558.hyp Sequence

Translation from 605 to 1072

> IP02558.hyp
MRTSMRISLRLLALLACAICSQASLERENNEGTNMANHKLSGVIQWKYEK
RPFCNAFTGCGRKRTYPSYPPFSLFKRNEVEEKPYNNEYLSEGLSDLIDI
NAEPAVENVQKQIMSQAKIFEAIKEASKEIFRQKNKQKMLQNEKEMQQLE
ERESK*

IP02558.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:51:11
Subject Length Description Subject Range Query Range Score Percent Strand
CCAP-PB 155 CG4910-PB 1..155 1..155 798 100 Plus
CCAP-PA 155 CG4910-PA 1..155 1..155 798 100 Plus

IP02558.pep Sequence

Translation from 605 to 1072

> IP02558.pep
MRTSMRISLRLLALLACAICSQASLERENNEGTNMANHKLSGVIQWKYEK
RPFCNAFTGCGRKRTYPSYPPFSLFKRNEVEEKPYNNEYLSEGLSDLIDI
NAEPAVENVQKQIMSQAKIFEAIKEASKEIFRQKNKQKMLQNEKEMQQLE
ERESK*

IP02558.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 13:19:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16697-PA 156 GF16697-PA 1..155 1..154 645 80 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 13:19:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12496-PA 154 GG12496-PA 1..154 1..155 769 95.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 13:19:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18507-PA 156 GH18507-PA 1..139 1..142 599 81.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:04:47
Subject Length Description Subject Range Query Range Score Percent Strand
CCAP-PB 155 CG4910-PB 1..155 1..155 798 100 Plus
CCAP-PA 155 CG4910-PA 1..155 1..155 798 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 13:19:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24352-PA 159 GI24352-PA 1..137 1..139 578 82.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 13:19:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23784-PA 157 GL23784-PA 1..156 1..154 647 80.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 13:19:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18518-PA 157 GA18518-PA 1..156 1..154 647 80.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 13:19:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23628-PA 155 GM23628-PA 1..155 1..155 806 98.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 13:19:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18435-PA 155 GD18435-PA 1..155 1..155 809 99.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 13:19:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24364-PA 151 GJ24364-PA 1..136 1..139 592 82.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 13:19:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11630-PA 168 GK11630-PA 18..139 18..136 554 85.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 13:19:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24016-PA 155 GE24016-PA 1..155 1..155 793 96.8 Plus