Clone IP02578 Report

Search the DGRC for IP02578

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:25
Well:78
Vector:pOT2
Associated Gene/Transcriptnmdyn-D6-RA
Protein status:IP02578.pep: gold
Preliminary Size:889
Sequenced Size:1353

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5310 2005-01-01 Successful iPCR screen
nmdyn-D6 2008-04-29 Release 5.5 accounting
nmdyn-D6 2008-08-15 Release 5.9 accounting
nmdyn-D6 2008-12-18 5.12 accounting

Clone Sequence Records

IP02578.complete Sequence

1353 bp (1353 high quality bases) assembled on 2006-01-24

GenBank Submission: BT024430

> IP02578.complete
AGCAGGACATGGAAATAACACTCGCTCTGATAAAGCCGCACGTGCTGCGG
AATACCTATGCAATGCAGCAGATCCGAGCCCTGATCTCCCAGAACTTCAC
CATTCTTGACCAGAAGGAGGTTTGCATTACGAAAGAACTATCTGAGCGAT
TTTACGCGGAGCATAAGGGAAAATTCTTCTACCACCGACTAACCAGTTTT
ATGAACAGCGGACCCAGCTACGCCCTGATTCTCCAGTCGGAAACCTGCAT
CCAGAAGTGGCGCAGTCTTCTGGGTCCCACCAAGGTGTTCCGTGCCGTGT
ACAGTGATCCCAACTGCATCCGGGCATTGTACGGAATATCCGACACTCGC
AACGCCTGCCATGGATCCGACAGCGAGGCATCCGCCCTCCGCGAGATCAG
CATCCTGTTCCCGGAGTTTGACGCGGCTGTTGGGAGTCGCCAGGCGAAAA
GGGAGGAGGCGTAGTCGAGGAGTTCTTGATCCTTAGATTGATCAAGATGT
CTACTACCAAAGCAGTTCATGAAAAATGTTTACATGTTGTTCAAGTAGCT
ATTGGAATTGTCCTAATTTATGTTTCTTATTTTTAATGCCTGGCATTTTT
AGATTAGTATTTAGGCTAGACTAGAATGTTGTCATATGGTATGCTTTAAA
AGTAATTGAAGTTTATGATACTTTTTGTGACTAGTGTACTAATATGTTTA
TATATTTATATATATATATTAGCAAAACAAAAACTATACTTCTTGTTGAT
AACTAATAAGAATTAGATGATTAAGGAATTTGGCAATGTTCTTTCGAAAG
AAAAATCGCTGTAATAAAAGAAGTCAATTGAAAAGTTAATTTTTTATGAA
GTTACTAACAACACCCTGCCGTAGATGGAACTATGGCAATTAACTTGAGA
TAACAGCGACATGTGTTTCAAAAACTTTATTTCGTCAATTTCCGGTTTAC
ATAATACAATTCTTTTGTTATTAGGTGGTAGGTACATGTATAGATAGAGA
TTTTCTTTTCGATTTGCTCTGGTTTCCGTTTAGCTCATTGTAAATAGTTG
GTAATAAAATTATAAAATTTATAAACTTAACAAATTATATAAATATATAT
ATATTTATGTGTGGGTAAGTTCTGTAGTACGCCTATAAATAGGTAAAGAT
ATAAATGTTTTGTATATCGGTTCAGACAATTGAGAAGCATAGCAAGAAAT
TCAAAAACGGGAAATATGTCATTAAAAAACTTCAAAATTCTTGTATTTTG
TTTGCGAGCGAGACGGCACCTGCGCACCTGCTGTCTTTTTCTAACTCGTG
TGCGACGAGTCCTTCACGAATAACAGAAAACTAATGTAAAAAAAAAAAAA
AAA

IP02578.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:20:41
Subject Length Description Subject Range Query Range Score Percent Strand
nmdyn-D6-RA 990 nmdyn-D6-RA 154..990 1..837 4185 100 Plus
CG9413-RA 3376 CG9413-RA 2936..3376 1350..910 2190 99.7 Minus
CG9413-RB 3492 CG9413-RB 3052..3492 1350..910 2190 99.7 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:22:25
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 14474342..14475473 206..1337 5660 100 Plus
chrX 22417052 chrX 14474061..14474268 1..208 1040 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:35:04 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:22:22
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14584026..14585170 206..1350 5710 99.9 Plus
X 23542271 X 14583745..14583952 1..208 1040 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:13:15
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 14592124..14593268 206..1350 5710 99.9 Plus
X 23527363 X 14591843..14592050 1..208 1040 100 Plus
Blast to na_te.dros performed 2019-03-16 00:22:23
Subject Length Description Subject Range Query Range Score Percent Strand
invader4 3105 invader4 INVADER4 3105bp 2562..2655 750..844 120 65.3 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 6372..6460 721..634 118 62.2 Minus
gypsy5 7369 gypsy5 GYPSY5 7369bp 5895..6105 1038..1247 113 58 Plus
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 807..998 706..523 112 56.4 Minus

IP02578.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:23:03 Download gff for IP02578.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 14475245..14475473 1109..1337 100   Plus
chrX 14474061..14474268 1..208 100 -> Plus
chrX 14474345..14475187 209..1051 97 == Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:18:07 Download gff for IP02578.complete
Subject Subject Range Query Range Percent Splice Strand
nmdyn-D6-RA 1..456 9..464 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:36:23 Download gff for IP02578.complete
Subject Subject Range Query Range Percent Splice Strand
nmdyn-D6-RA 1..456 9..464 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:50:03 Download gff for IP02578.complete
Subject Subject Range Query Range Percent Splice Strand
nmdyn-D6-RA 1..456 9..464 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:11:04 Download gff for IP02578.complete
Subject Subject Range Query Range Percent Splice Strand
nmdyn-D6-RA 1..456 9..464 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 03:59:05 Download gff for IP02578.complete
Subject Subject Range Query Range Percent Splice Strand
nmdyn-D6-RA 1..456 9..464 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:07:51 Download gff for IP02578.complete
Subject Subject Range Query Range Percent Splice Strand
nmdyn-D6-RA 53..889 1..837 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:36:23 Download gff for IP02578.complete
Subject Subject Range Query Range Percent Splice Strand
nmdyn-D6-RA 69..864 1..796 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:50:03 Download gff for IP02578.complete
Subject Subject Range Query Range Percent Splice Strand
nmdyn-D6-RA 69..864 1..796 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:11:04 Download gff for IP02578.complete
Subject Subject Range Query Range Percent Splice Strand
nmdyn-D6-RA 53..889 1..837 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 03:59:05 Download gff for IP02578.complete
Subject Subject Range Query Range Percent Splice Strand
nmdyn-D6-RA 69..864 1..796 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:23:03 Download gff for IP02578.complete
Subject Subject Range Query Range Percent Splice Strand
X 14583745..14583952 1..208 100 -> Plus
X 14584029..14585157 209..1337 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:23:03 Download gff for IP02578.complete
Subject Subject Range Query Range Percent Splice Strand
X 14583745..14583952 1..208 100 -> Plus
X 14584029..14585157 209..1337 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:23:03 Download gff for IP02578.complete
Subject Subject Range Query Range Percent Splice Strand
X 14583745..14583952 1..208 100 -> Plus
X 14584029..14585157 209..1337 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:50:03 Download gff for IP02578.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 14477778..14477985 1..208 100 -> Plus
arm_X 14478062..14479190 209..1337 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:59:53 Download gff for IP02578.complete
Subject Subject Range Query Range Percent Splice Strand
X 14592127..14593255 209..1337 100   Plus
X 14591843..14592050 1..208 100 -> Plus

IP02578.hyp Sequence

Translation from 2 to 463

> IP02578.hyp
QDMEITLALIKPHVLRNTYAMQQIRALISQNFTILDQKEVCITKELSERF
YAEHKGKFFYHRLTSFMNSGPSYALILQSETCIQKWRSLLGPTKVFRAVY
SDPNCIRALYGISDTRNACHGSDSEASALREISILFPEFDAAVGSRQAKR
EEA*

IP02578.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:51:25
Subject Length Description Subject Range Query Range Score Percent Strand
nmdyn-D6-PA 151 CG5310-PA 1..151 3..153 776 100 Plus
awd-PE 153 CG2210-PE 6..148 4..149 156 29.5 Plus
awd-PD 168 CG2210-PD 21..163 4..149 156 29.5 Plus
awd-PC 168 CG2210-PC 21..163 4..149 156 29.5 Plus

IP02578.pep Sequence

Translation from 8 to 463

> IP02578.pep
MEITLALIKPHVLRNTYAMQQIRALISQNFTILDQKEVCITKELSERFYA
EHKGKFFYHRLTSFMNSGPSYALILQSETCIQKWRSLLGPTKVFRAVYSD
PNCIRALYGISDTRNACHGSDSEASALREISILFPEFDAAVGSRQAKREE
A*

IP02578.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 13:19:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22564-PA 150 GF22564-PA 1..149 1..149 689 83.9 Plus
Dana\GF22983-PA 152 GF22983-PA 5..136 2..136 170 30.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 13:19:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17849-PA 150 GG17849-PA 1..149 1..149 769 95.3 Plus
Dere\GG11858-PA 172 GG11858-PA 25..167 2..147 172 29.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 13:19:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11937-PA 153 GH11937-PA 1..152 1..151 620 75 Plus
Dgri\GH18934-PA 153 GH18934-PA 6..148 2..147 173 29.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:16:06
Subject Length Description Subject Range Query Range Score Percent Strand
nmdyn-D6-PA 151 CG5310-PA 1..151 1..151 776 100 Plus
awd-PE 153 CG2210-PE 6..148 2..147 156 29.5 Plus
awd-PD 168 CG2210-PD 21..163 2..147 156 29.5 Plus
awd-PC 168 CG2210-PC 21..163 2..147 156 29.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 13:19:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14139-PA 158 GI14139-PA 1..147 1..147 575 70.1 Plus
Dmoj\GI24450-PA 153 GI24450-PA 6..148 2..147 167 28.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 13:19:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20145-PA 152 GL20145-PA 3..151 2..149 652 79.9 Plus
Dper\GL23527-PA 153 GL23527-PA 6..148 2..147 172 29.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 13:19:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18797-PA 152 GA18797-PA 3..151 2..149 662 81.2 Plus
Dpse\GA27289-PA 153 GA27289-PA 6..148 2..147 172 29.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 13:19:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17681-PA 151 GM17681-PA 1..151 1..151 780 94 Plus
Dsec\GM16421-PA 153 GM16421-PA 6..148 2..147 172 29.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 13:19:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17175-PA 151 GD17175-PA 1..151 1..151 785 94.7 Plus
Dsim\GD16337-PA 172 GD16337-PA 25..167 2..147 171 29.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 13:19:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19086-PA 147 GJ19086-PA 1..138 1..138 587 76.1 Plus
Dvir\GJ24119-PA 153 GJ24119-PA 6..137 2..136 172 30.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 13:19:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14697-PA 152 GK14697-PA 1..138 1..138 608 77.5 Plus
Dwil\GK19226-PA 139 GK19226-PA 6..133 4..134 184 32.8 Plus
Dwil\GK10972-PA 153 GK10972-PA 6..137 2..136 170 30.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 13:19:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17148-PA 150 GE17148-PA 1..149 1..149 783 96.6 Plus
Dyak\awd-PA 172 GE23305-PA 25..167 2..147 172 29.5 Plus