Clone IP02721 Report

Search the DGRC for IP02721

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:27
Well:21
Vector:pOT2
Associated Gene/TranscriptLip3-RA
Protein status:IP02721.pep: gold
Preliminary Size:1211
Sequenced Size:1417

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8823 2005-01-01 Successful iPCR screen
Lip3 2008-04-29 Release 5.5 accounting
Lip3 2008-08-15 Release 5.9 accounting
Lip3 2008-12-18 5.12 accounting

Clone Sequence Records

IP02721.complete Sequence

1417 bp (1417 high quality bases) assembled on 2005-02-26

GenBank Submission: BT023257

> IP02721.complete
CCAGGTGTATCTAACTCTCATATATATTTAACTGATTTCTTGGGGGTCTT
CGTACGCGTTTGCCAATAAATCTGATTGTTTGTGACTATCAATGGATAGA
TAGTGGTCAAGGGGCTATAAAAGCTGTGATCCCGAACCACACGGATCATA
GTACTGCGATGACAAGAGGAGCGTTAAAAGTGACCATTTTACTGGTCGGA
TTGGGCCTGGTTTTGGCCGGATCTCGGCCTATTTCTGATTGCGGTGAGCG
CATTGAAGACGATGGCTACCCGATGGAGCGCCACGAGGTGGTCACCAGTG
ACAACTACATCCTGACTATGCACCGCATCCCGTATTCCCCCAAAACGGGT
GAATCTTCCAACCGACCGGTGGCCTTCCTCATGCACGGCATGCTGAGTTC
TTCCTCCGATTGGGTGCTCATGGGTCCAGAGCGATCCCTGGCCTATATGC
TGGCCGATGCCGGCTACGATGTGTGGATGGGCAATGCCCGAGGCAACACC
TACTCCAAGGCGCACAAGTACTGGCCCACTTACTGGCAGATCTTCTGGAA
CTTCAGCTGGAACGAGATCGGCATGTACGACGTTCCGGCGATGATTGATT
ATGTCTTGGCAAAGACTGGACAGCAGCAGGTGCAATATGTGGGCCACTCC
CAGGGTACCACTGTCTATCTGGTGATGGTGTCGGAGAGACCCGAGTACAA
TGACAAGATCAAGTCCGCCCATCTTCTGGGACCAGCCGCCTATATGGGCA
ACATGAAGAGCCCCTTGACCCGCGCCTTTGCACCCATTTTGGGCCAGCCC
AATGCCATCGTGGAGGTCTGCGGATCCATGGAGTTCATGCCCAGCAATAA
GTTCAAGCAGGATTTGGGCATAGAGATGTGCCAGGCCACTTCTCCTTATG
CCGACATGTGCGCCAACGAGATCTTCCTGATTGGAGGCTATGATACCGAA
CAGCTGGACTACGAACTCCTTGAGCACATCAAGGCCACGTCTCCGGCTGG
CGCATCGGTGAACCAGAACTTGCACTTTTGTCAGGAATATAACTCTGGAA
AGTTCCGTAAATTCGACTACACCGCTCTCCGTAATCCCTATGAGTACGGC
AGCTACTTCCCTCCGGATTACAAGCTAAAGAATGCCAAGGCCCCGGTTCT
ATTGTACTACGGAGCCAATGACTGGATGTGCGATGTGAGCGATGTCCGCA
AGTTGAGAGACGAACTGCCCAACATGGCGCTGGACTACCTGGTGCCGTTC
GAGAAGTGGGCCCATCTGGATTTCATTTGGGGCACTGAGGCCAGAAAATA
CGTCTACGACGAGGTCTTGAAGCAGATGCAATCCTACGAATAGATTTATT
TTTCAGGCAATAAACGGAGCATTTGAGCTAGCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAA

IP02721.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:43:27
Subject Length Description Subject Range Query Range Score Percent Strand
Lip3-RA 1436 Lip3-RA 1..1385 1..1385 6925 100 Plus
CheA87a-RA 663 CheA87a-RA 605..663 1385..1327 295 100 Minus
CG8093-RA 1699 CG8093-RA 519..589 438..508 235 88.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:36:59
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 9195970..9196690 963..243 3545 99.4 Minus
chr3R 27901430 chr3R 9195474..9195893 1382..963 2085 99.8 Minus
chr3R 27901430 chr3R 9196844..9197086 243..1 1215 100 Minus
chr2R 21145070 chr2R 11102380..11102514 508..374 240 78.5 Minus
chr3L 24539361 chr3L 20450002..20450072 435..505 220 87.3 Plus
chr2L 23010047 chr2L 22181415..22181533 387..505 220 79 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:35:34 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:36:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13370788..13371508 963..243 3605 100 Minus
3R 32079331 3R 13370289..13370711 1385..963 2115 100 Minus
3R 32079331 3R 13371662..13371904 243..1 1215 100 Minus
2R 25286936 2R 15215170..15215304 508..374 240 78.5 Minus
3L 28110227 3L 20460995..20461065 435..505 220 87.3 Plus
2L 23513712 2L 22182891..22183009 387..505 220 79 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:33:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 13111619..13112339 963..243 3605 100 Minus
3R 31820162 3R 13111120..13111542 1385..963 2115 100 Minus
3R 31820162 3R 13112493..13112735 243..1 1215 100 Minus
2R 25260384 2R 15216369..15216439 508..438 235 88.7 Minus
2L 23513712 2L 22182891..22183009 387..505 220 78.9 Plus
3L 28103327 3L 20454095..20454165 435..505 220 87.3 Plus
Blast to na_te.dros performed on 2019-03-15 21:36:58 has no hits.

IP02721.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:37:48 Download gff for IP02721.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 9195474..9195893 963..1382 99 <- Minus
chr3R 9195971..9196690 243..962 99 <- Minus
chr3R 9196845..9197086 1..242 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:18:31 Download gff for IP02721.complete
Subject Subject Range Query Range Percent Splice Strand
Lip3-RA 1..1185 159..1343 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:11:45 Download gff for IP02721.complete
Subject Subject Range Query Range Percent Splice Strand
Lip3-RA 1..1185 159..1343 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:54:26 Download gff for IP02721.complete
Subject Subject Range Query Range Percent Splice Strand
Lip3-RA 1..1185 159..1343 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:56:23 Download gff for IP02721.complete
Subject Subject Range Query Range Percent Splice Strand
Lip3-RA 1..1185 159..1343 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:59:17 Download gff for IP02721.complete
Subject Subject Range Query Range Percent Splice Strand
Lip3-RA 1..1185 159..1343 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:06:02 Download gff for IP02721.complete
Subject Subject Range Query Range Percent Splice Strand
Lip3-RA 1..1382 1..1382 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:11:45 Download gff for IP02721.complete
Subject Subject Range Query Range Percent Splice Strand
Lip3-RA 1..1382 1..1382 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:54:26 Download gff for IP02721.complete
Subject Subject Range Query Range Percent Splice Strand
Lip3-RA 1..1382 1..1382 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:56:23 Download gff for IP02721.complete
Subject Subject Range Query Range Percent Splice Strand
Lip3-RA 1..1382 1..1382 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:17 Download gff for IP02721.complete
Subject Subject Range Query Range Percent Splice Strand
Lip3-RA 1..1382 1..1382 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:37:48 Download gff for IP02721.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13370292..13370711 963..1382 100 <- Minus
3R 13370789..13371508 243..962 100 <- Minus
3R 13371663..13371904 1..242 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:37:48 Download gff for IP02721.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13370292..13370711 963..1382 100 <- Minus
3R 13370789..13371508 243..962 100 <- Minus
3R 13371663..13371904 1..242 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:37:48 Download gff for IP02721.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13370292..13370711 963..1382 100 <- Minus
3R 13370789..13371508 243..962 100 <- Minus
3R 13371663..13371904 1..242 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:54:26 Download gff for IP02721.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9196014..9196433 963..1382 100 <- Minus
arm_3R 9196511..9197230 243..962 100 <- Minus
arm_3R 9197385..9197626 1..242 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:31:38 Download gff for IP02721.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13111123..13111542 963..1382 100 <- Minus
3R 13111620..13112339 243..962 100 <- Minus
3R 13112494..13112735 1..242 100   Minus

IP02721.hyp Sequence

Translation from 158 to 1342

> IP02721.hyp
MTRGALKVTILLVGLGLVLAGSRPISDCGERIEDDGYPMERHEVVTSDNY
ILTMHRIPYSPKTGESSNRPVAFLMHGMLSSSSDWVLMGPERSLAYMLAD
AGYDVWMGNARGNTYSKAHKYWPTYWQIFWNFSWNEIGMYDVPAMIDYVL
AKTGQQQVQYVGHSQGTTVYLVMVSERPEYNDKIKSAHLLGPAAYMGNMK
SPLTRAFAPILGQPNAIVEVCGSMEFMPSNKFKQDLGIEMCQATSPYADM
CANEIFLIGGYDTEQLDYELLEHIKATSPAGASVNQNLHFCQEYNSGKFR
KFDYTALRNPYEYGSYFPPDYKLKNAKAPVLLYYGANDWMCDVSDVRKLR
DELPNMALDYLVPFEKWAHLDFIWGTEARKYVYDEVLKQMQSYE*

IP02721.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:52:49
Subject Length Description Subject Range Query Range Score Percent Strand
Lip3-PA 394 CG8823-PA 1..394 1..394 2130 100 Plus
CG8093-PB 398 CG8093-PB 2..397 6..392 998 49.4 Plus
CG8093-PA 398 CG8093-PA 2..397 6..392 998 49.4 Plus
CG31871-PA 531 CG31871-PA 87..438 36..394 869 47.1 Plus
CG3635-PB 425 CG3635-PB 24..419 2..394 835 41.4 Plus

IP02721.pep Sequence

Translation from 158 to 1342

> IP02721.pep
MTRGALKVTILLVGLGLVLAGSRPISDCGERIEDDGYPMERHEVVTSDNY
ILTMHRIPYSPKTGESSNRPVAFLMHGMLSSSSDWVLMGPERSLAYMLAD
AGYDVWMGNARGNTYSKAHKYWPTYWQIFWNFSWNEIGMYDVPAMIDYVL
AKTGQQQVQYVGHSQGTTVYLVMVSERPEYNDKIKSAHLLGPAAYMGNMK
SPLTRAFAPILGQPNAIVEVCGSMEFMPSNKFKQDLGIEMCQATSPYADM
CANEIFLIGGYDTEQLDYELLEHIKATSPAGASVNQNLHFCQEYNSGKFR
KFDYTALRNPYEYGSYFPPDYKLKNAKAPVLLYYGANDWMCDVSDVRKLR
DELPNMALDYLVPFEKWAHLDFIWGTEARKYVYDEVLKQMQSYE*

IP02721.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 15:52:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17389-PA 394 GF17389-PA 2..394 3..394 1998 92.9 Plus
Dana\GF12624-PA 398 GF12624-PA 35..397 32..392 1007 52.1 Plus
Dana\GF15814-PA 530 GF15814-PA 83..438 32..394 893 46.6 Plus
Dana\GF15801-PA 434 GF15801-PA 79..430 36..394 853 45.3 Plus
Dana\GF17879-PA 405 GF17879-PA 32..401 25..394 823 43 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 15:52:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17061-PA 394 GG17061-PA 1..394 1..394 2090 97.5 Plus
Dere\GG22369-PA 398 GG22369-PA 35..397 32..392 982 50.7 Plus
Dere\GG23662-PA 533 GG23662-PA 83..438 32..394 897 46.8 Plus
Dere\GG17110-PA 405 GG17110-PA 32..401 25..394 825 43.3 Plus
Dere\GG23650-PA 434 GG23650-PA 75..430 32..394 820 44.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 15:52:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18550-PA 394 GH18550-PA 8..394 8..394 1867 86.3 Plus
Dgri\GH20794-PA 401 GH20794-PA 36..397 32..390 1011 52.2 Plus
Dgri\GH10420-PA 535 GH10420-PA 84..439 32..394 895 47.1 Plus
Dgri\GH10411-PA 444 GH10411-PA 80..435 32..394 853 44.9 Plus
Dgri\GH10412-PA 444 GH10412-PA 80..435 32..394 849 44.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:35:55
Subject Length Description Subject Range Query Range Score Percent Strand
Lip3-PA 394 CG8823-PA 1..394 1..394 2130 100 Plus
CG8093-PB 398 CG8093-PB 2..397 6..392 998 49.4 Plus
CG8093-PA 398 CG8093-PA 2..397 6..392 998 49.4 Plus
CG31871-PA 531 CG31871-PA 87..438 36..394 869 47.1 Plus
CG3635-PB 425 CG3635-PB 24..419 2..394 835 41.4 Plus
CG6753-PB 405 CG6753-PB 32..401 25..394 819 43.3 Plus
Lip4-PA 434 CG6113-PA 75..430 32..394 817 44.1 Plus
Lip4-PC 448 CG6113-PC 89..444 32..394 817 44.1 Plus
Lip4-PB 432 CG6113-PB 75..428 32..394 811 44.1 Plus
mag-PA 399 CG5932-PA 15..397 16..394 792 42.7 Plus
CG2772-PA 416 CG2772-PA 37..408 30..394 786 43.8 Plus
CG31089-PA 421 CG31089-PA 50..415 30..394 755 42 Plus
CG31091-PC 424 CG31091-PC 59..422 32..394 730 41.2 Plus
CG31091-PB 424 CG31091-PB 59..422 32..394 730 41.2 Plus
CG18301-PA 422 CG18301-PA 54..401 36..392 725 40 Plus
CG7329-PB 457 CG7329-PB 46..390 32..394 720 41.4 Plus
CG7329-PA 457 CG7329-PA 46..390 32..394 720 41.4 Plus
CG18302-PA 406 CG18302-PA 47..402 32..394 663 38.9 Plus
Lip1-PB 439 CG7279-PB 76..412 36..388 660 39.8 Plus
Lip1-PA 439 CG7279-PA 76..412 36..388 660 39.8 Plus
CG11406-PB 396 CG11406-PB 38..385 42..389 642 38.9 Plus
CG17097-PB 1087 CG17097-PB 730..1083 32..392 627 35.7 Plus
CG31872-PB 1073 CG31872-PB 715..1067 27..387 616 36.8 Plus
CG31872-PA 1073 CG31872-PA 715..1067 27..387 616 36.8 Plus
CG18284-PB 457 CG18284-PB 107..450 36..387 615 37.5 Plus
CG18284-PC 457 CG18284-PC 107..450 36..387 615 37.5 Plus
CG11600-PB 406 CG11600-PB 47..402 32..394 610 36.2 Plus
CG11406-PA 326 CG11406-PA 1..315 75..389 602 39.7 Plus
CG3635-PC 301 CG3635-PC 24..293 2..267 601 43.8 Plus
CG18530-PA 389 CG18530-PA 23..380 30..394 591 36.6 Plus
CG11608-PB 430 CG11608-PB 52..407 32..394 587 34.5 Plus
CG11598-PB 388 CG11598-PB 23..380 30..394 574 36.2 Plus
CG11406-PD 266 CG11406-PD 1..193 75..267 407 42.5 Plus
CG11406-PC 266 CG11406-PC 1..193 75..267 407 42.5 Plus
Lip2-PA 413 CG17116-PA 8..403 4..393 366 27.7 Plus
Lip2-PB 377 CG17116-PB 4..367 32..393 353 27.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 15:52:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23249-PA 394 GI23249-PA 23..394 23..394 1862 88.7 Plus
Dmoj\GI20878-PA 399 GI20878-PA 24..398 20..392 1039 50.7 Plus
Dmoj\GI23403-PA 553 GI23403-PA 85..440 32..394 890 47.1 Plus
Dmoj\GI23315-PA 440 GI23315-PA 76..431 32..394 853 44.9 Plus
Dmoj\GI14514-PA 191 GI14514-PA 1..167 75..241 821 86.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 15:52:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23069-PA 393 GL23069-PA 2..393 3..394 1957 89.5 Plus
Dper\GL11473-PA 398 GL11473-PA 35..397 32..392 1007 51.8 Plus
Dper\GL26620-PA 532 GL26620-PA 83..438 32..394 899 47.4 Plus
Dper\GL25626-PA 432 GL25626-PA 58..423 32..394 840 43.1 Plus
Dper\GL26613-PA 438 GL26613-PA 74..434 27..394 809 42.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 15:52:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21347-PA 393 GA21347-PA 2..393 3..394 1944 89 Plus
Dpse\GA20819-PA 398 GA20819-PA 35..397 32..392 1008 52.1 Plus
Dpse\GA16540-PA 532 GA16540-PA 83..438 32..394 899 47.4 Plus
Dpse\GA17576-PA 470 GA17576-PA 96..461 32..394 837 43.1 Plus
Dpse\GA15458-PA 410 GA15458-PA 5..406 10..394 811 42.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 15:52:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25946-PA 394 GM25946-PA 1..394 1..394 2123 98.7 Plus
Dsec\GM20153-PA 398 GM20153-PA 2..397 6..392 991 49.1 Plus
Dsec\GM18659-PA 531 GM18659-PA 83..438 32..394 899 46.8 Plus
Dsec\GM18524-PA 434 GM18524-PA 75..430 32..394 832 44.1 Plus
Dsec\GM25994-PA 405 GM25994-PA 32..401 25..394 826 43.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 15:52:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20506-PA 394 GD20506-PA 1..394 1..394 2109 98.5 Plus
Dsim\GD25632-PA 398 GD25632-PA 2..397 6..392 1010 49.6 Plus
Dsim\GD23722-PA 531 GD23722-PA 83..438 32..394 898 46.8 Plus
Dsim\GD20554-PA 405 GD20554-PA 32..401 25..394 826 43.3 Plus
Dsim\GD24350-PA 379 GD24350-PA 4..373 32..394 809 42.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 15:52:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10746-PA 394 GJ10746-PA 23..394 23..394 1865 89.5 Plus
Dvir\GJ20613-PA 399 GJ20613-PA 40..396 36..390 1019 51.5 Plus
Dvir\GJ23897-PA 540 GJ23897-PA 85..440 32..394 891 47.1 Plus
Dvir\GJ23823-PA 444 GJ23823-PA 80..435 32..394 867 45.2 Plus
Dvir\GJ23834-PA 371 GJ23834-PA 7..364 30..394 843 44.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 15:52:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13352-PA 388 GK13352-PA 3..388 4..394 1832 85.4 Plus
Dwil\GK19443-PA 400 GK19443-PA 37..399 32..392 994 50.7 Plus
Dwil\GK14608-PA 546 GK14608-PA 85..440 32..394 885 46.6 Plus
Dwil\GK14601-PA 441 GK14601-PA 81..438 30..394 829 43 Plus
Dwil\GK24189-PA 451 GK24189-PA 76..442 32..394 826 42.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 15:52:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24449-PA 394 GE24449-PA 1..394 1..394 2098 98 Plus
Dyak\GE12257-PA 398 GE12257-PA 2..397 6..392 994 49.1 Plus
Dyak\GE18478-PA 537 GE18478-PA 83..438 32..394 898 46.8 Plus
Dyak\GE24500-PA 405 GE24500-PA 32..401 25..394 820 43 Plus
Dyak\GE12963-PA 388 GE12963-PA 23..385 32..394 819 43.8 Plus