Clone IP02836 Report

Search the DGRC for IP02836

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:28
Well:36
Vector:pOT2
Associated Gene/TranscriptBest4-RB
Protein status:IP02836.pep: gold
Preliminary Size:1383
Sequenced Size:1736

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7259 2005-01-01 Successful iPCR screen
Best4 2008-08-15 Release 5.9 accounting
Best4 2008-12-18 5.12 accounting

Clone Sequence Records

IP02836.complete Sequence

1736 bp (1719 high quality bases) assembled on 2008-12-09

GenBank Submission: BT025894.2

> IP02836.complete
AGAGAACTAGTCTCGAGTTTTTTTTTTTTTTTTTGAAAATTATTCAATAC
GAATTTCTCGTCATGACTGTGACCTATACCTCACGTGTGAGTACCTCGAG
TGTTCTCAGTAATTTCTTGGGGCTGCTGGTCAGATGGCGCGGCAGTATTT
ACAAGTTAATATGGTTGGACCTTATTGTATTTTTCGGATTGTACTGTTTA
CTGGCAATTACATATCGTCTGTTGGTAAACGAAGAGGGCAAAAGGTTTTT
TGAGGCCATTATGTCGTATTGCGAGAAAAATGGCTCCCTCATTCCGTTAT
CGTTCGTTTTGGGATTTTTCGTGAGAATCGTGATGAACCGATGGTGGGAC
CAATATACCACCATTCCTTGGCCAGATGGAATTGCCATTTTGATAAGCAC
CAGTATCCATGGCTCCGATGATAGAGCCAGGGTAATGAGGCGAACTATCC
TAAGATATGTGTGCCTGTGCCAGGTGATAGTATTCACCATGATATCACCG
CGTGTCAAGCGCCGATTCCCCACCTACACTCAAATTATTGAGGCTGGCTT
TCTGCTGGAAAATGAAAAGAAAATCATTGAGGCCATGGATCAGGCCTTCC
CAAGTTATCCAAAGCACTGGATGCCCATCGTTTGGGCAGCTAGTATTGTG
ATGAGAGCGCGGAGGGAGAATAAAATCCGGGATGACTACGCTGTTAAGAC
CATCATCGATGAATTGAACCAGTTACGCGGGAATTGTGGATTTTTGCTCT
ATTACGATTGGATAAGTGTTCCACTGGTCTACACCCAAGTGGTCACCGTG
GCCACGTACTCCTTCTTCCTGTTCAGTGTCCTCGGACAGCAGTGGAATGA
AAGTCATTCCGACGAGGATGGTACTAGGATCAGGAGATGGTTTCCGATCC
TGACCGTTCTCCAGTTTTTCTTTTACATGGGTTGGCTCAAGGTAGCCGAG
ACGCTGATAAATCCTTTCGGAGAGGATGATGACGACTTCGAGCTCAACTG
GATAATCGATAGGAATCTTACCGTTTCTTATTGCATTGTGGATGAGATGC
ACCAGGAGCATCCGGAACTTGTTAAGGATCAGTATTGGGAAGAGGTCTTC
CCTAATGAAATTCCATACGCTCAGCCAAAAATGCGTCAAAATCCTCCAGC
AGCTTCCACGGCCTATATGGAATCACAATCAAAACTCCAGAAACGCCATG
AATCTGCAATGTCAACTCTTAGTACCCGTTCGCGAAACAACTTCCGACAA
AACTTCCTGGGAAGACCATCTGCCACTGGTAGCTACTCAGACTCCATCCA
AATGGAAGATGGGCCGTCGCGAGTGACCTTCAGTGAGAATCAATTTGATT
TGCCACATGATGAAGCGAACAGCTCACACAAGCCGTCGCAATCCACAATT
GACTTTAACGATCTAATTGAGCAGCGTCGTCGCGAACGCAGGGAACGCAT
TCGACACCGATTTTTGGATATGCAAAGTACCCATCTGCGACATGATACCT
CCGGTGCTCCTTATACGATCACAGTTCTTCGTCCCCCATCCGATGAAACT
CTGTCCGAGAGTCAGGAAGCGGGGGACAGAGCTCAACAGGATCCATCGGG
CAGCAAGGAACCCCCTCCAAATAAGACGGAAAAGCAGGATTAGACGAAAA
CGAAATAAAAATATTAAAATCACAATTTGTTTCTGTACATTTTAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

IP02836.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:14:45
Subject Length Description Subject Range Query Range Score Percent Strand
Best4-RB 1686 Best4-RB 25..1686 32..1693 8310 100 Plus
Best4.a 1655 Best4.a 94..1655 132..1693 7810 100 Plus
Best1-RA 3144 Best1-RA 1316..1506 912..1102 385 80.1 Plus
Best4.a 1655 Best4.a 15..69 32..86 275 100 Plus
Best1-RA 3144 Best1-RA 956..1042 561..647 180 80.4 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:02:05
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 15289335..15290084 243..992 3690 99.5 Plus
chr3L 24539361 chr3L 15290700..15290994 1399..1693 1475 100 Plus
chr3L 24539361 chr3L 15290426..15290639 1185..1398 1070 100 Plus
chr3L 24539361 chr3L 15290176..15290369 991..1184 955 99.5 Plus
chr3L 24539361 chr3L 15289176..15289290 132..246 575 100 Plus
chr3L 24539361 chr3L 15289010..15289111 32..133 510 100 Plus
chr3R 27901430 chr3R 5990770..5990850 992..912 225 85.2 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:36:09 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:02:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15299283..15300032 243..992 3750 100 Plus
3L 28110227 3L 15300648..15300944 1399..1695 1485 100 Plus
3L 28110227 3L 15300374..15300587 1185..1398 1070 100 Plus
3L 28110227 3L 15300124..15300317 991..1184 970 100 Plus
3L 28110227 3L 15299124..15299238 132..246 575 100 Plus
3L 28110227 3L 15298958..15299059 32..133 510 100 Plus
3R 32079331 3R 10165019..10165099 992..912 225 85.2 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:32:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 15292383..15293132 243..992 3750 100 Plus
3L 28103327 3L 15293748..15294044 1399..1695 1485 100 Plus
3L 28103327 3L 15293474..15293687 1185..1398 1070 100 Plus
3L 28103327 3L 15293224..15293417 991..1184 970 100 Plus
3L 28103327 3L 15292224..15292338 132..246 575 100 Plus
3L 28103327 3L 15292058..15292159 32..133 510 100 Plus
3R 31820162 3R 9905850..9905930 992..912 225 85.1 Minus
3R 31820162 3R 9906204..9906290 647..561 180 80.4 Minus
3R 31820162 3R 9905683..9905791 1102..994 170 77 Minus
Blast to na_te.dros performed on 2019-03-15 15:02:04 has no hits.

IP02836.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:03:07 Download gff for IP02836.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 15289011..15289111 33..133 100 -> Plus
chr3L 15289178..15289288 134..244 100 -> Plus
chr3L 15289337..15290084 245..992 99 -> Plus
chr3L 15290178..15290369 993..1184 99 -> Plus
chr3L 15290426..15290639 1185..1398 100 -> Plus
chr3L 15290700..15290994 1399..1693 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:03:43 Download gff for IP02836.complete
Subject Subject Range Query Range Percent Splice Strand
Best4-RB 1..1581 63..1643 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:21:39 Download gff for IP02836.complete
Subject Subject Range Query Range Percent Splice Strand
Best4-RB 1..1581 63..1643 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:59:09 Download gff for IP02836.complete
Subject Subject Range Query Range Percent Splice Strand
Best4-RB 1..1581 63..1643 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 15:41:09 has no hits.
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:23:36 Download gff for IP02836.complete
Subject Subject Range Query Range Percent Splice Strand
Best4-RB 1..1581 63..1643 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-09 11:32:44 Download gff for IP02836.complete
Subject Subject Range Query Range Percent Splice Strand
Best4-RB 1..1581 63..1643 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:21:39 Download gff for IP02836.complete
Subject Subject Range Query Range Percent Splice Strand
Best4-RB 1..1662 32..1693 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:59:09 Download gff for IP02836.complete
Subject Subject Range Query Range Percent Splice Strand
Best4-RB 1..1662 32..1693 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:41:09 Download gff for IP02836.complete
Subject Subject Range Query Range Percent Splice Strand
Best4-RB 1..1581 94..1674 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:23:36 Download gff for IP02836.complete
Subject Subject Range Query Range Percent Splice Strand
Best4-RB 1..1662 32..1693 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:03:07 Download gff for IP02836.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15298959..15299059 33..133 100 -> Plus
3L 15299126..15299236 134..244 100 -> Plus
3L 15299285..15300032 245..992 100 -> Plus
3L 15300126..15300317 993..1184 100 -> Plus
3L 15300374..15300587 1185..1398 100 -> Plus
3L 15300648..15300942 1399..1693 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:03:07 Download gff for IP02836.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15298959..15299059 33..133 100 -> Plus
3L 15299126..15299236 134..244 100 -> Plus
3L 15299285..15300032 245..992 100 -> Plus
3L 15300126..15300317 993..1184 100 -> Plus
3L 15300374..15300587 1185..1398 100 -> Plus
3L 15300648..15300942 1399..1693 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:03:07 Download gff for IP02836.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15298959..15299059 33..133 100 -> Plus
3L 15299126..15299236 134..244 100 -> Plus
3L 15299285..15300032 245..992 100 -> Plus
3L 15300126..15300317 993..1184 100 -> Plus
3L 15300374..15300587 1185..1398 100 -> Plus
3L 15300648..15300942 1399..1693 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:59:09 Download gff for IP02836.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15292059..15292159 33..133 100 -> Plus
arm_3L 15292226..15292336 134..244 100 -> Plus
arm_3L 15292385..15293132 245..992 100 -> Plus
arm_3L 15293226..15293417 993..1184 100 -> Plus
arm_3L 15293474..15293687 1185..1398 100 -> Plus
arm_3L 15293748..15294042 1399..1693 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:53:17 Download gff for IP02836.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15293226..15293417 993..1184 100 -> Plus
3L 15292385..15293132 245..992 100 -> Plus
3L 15293474..15293687 1185..1398 100 -> Plus
3L 15293748..15294042 1399..1693 100   Plus
3L 15292059..15292159 33..133 100 -> Plus
3L 15292226..15292336 134..244 100 -> Plus

IP02836.pep Sequence

Translation from 2 to 1642

> IP02836.pep
RTSLEFFFFFLKIIQYEFLVMTVTYTSRVSTSSVLSNFLGLLVRWRGSIY
KLIWLDLIVFFGLYCLLAITYRLLVNEEGKRFFEAIMSYCEKNGSLIPLS
FVLGFFVRIVMNRWWDQYTTIPWPDGIAILISTSIHGSDDRARVMRRTIL
RYVCLCQVIVFTMISPRVKRRFPTYTQIIEAGFLLENEKKIIEAMDQAFP
SYPKHWMPIVWAASIVMRARRENKIRDDYAVKTIIDELNQLRGNCGFLLY
YDWISVPLVYTQVVTVATYSFFLFSVLGQQWNESHSDEDGTRIRRWFPIL
TVLQFFFYMGWLKVAETLINPFGEDDDDFELNWIIDRNLTVSYCIVDEMH
QEHPELVKDQYWEEVFPNEIPYAQPKMRQNPPAASTAYMESQSKLQKRHE
SAMSTLSTRSRNNFRQNFLGRPSATGSYSDSIQMEDGPSRVTFSENQFDL
PHDEANSSHKPSQSTIDFNDLIEQRRRERRERIRHRFLDMQSTHLRHDTS
GAPYTITVLRPPSDETLSESQEAGDRAQQDPSGSKEPPPNKTEKQD*

IP02836.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:37:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23693-PA 540 GF23693-PA 17..535 37..545 1766 64.8 Plus
Dana\GF17535-PA 722 GF17535-PA 1..375 21..390 1324 61.3 Plus
Dana\GF10734-PA 526 GF10734-PA 1..436 21..470 1209 49.1 Plus
Dana\GF10904-PA 815 GF10904-PA 1..384 21..403 954 46.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:37:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15891-PA 526 GG15891-PA 1..526 21..546 2575 95.6 Plus
Dere\GG17296-PA 769 GG17296-PA 1..406 21..426 1330 57.7 Plus
Dere\GG13553-PA 537 GG13553-PA 1..493 21..502 1203 48.2 Plus
Dere\GG14064-PA 809 GG14064-PA 1..384 21..403 953 46.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:37:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17028-PA 561 GH17028-PA 1..502 21..528 1683 63.1 Plus
Dgri\Rfp1-PA 779 GH18459-PA 1..375 21..390 1336 62.1 Plus
Dgri\GH17026-PA 535 GH17026-PA 1..517 21..544 1182 44.8 Plus
Dgri\GH16281-PA 818 GH16281-PA 1..372 21..385 962 48.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:09:18
Subject Length Description Subject Range Query Range Score Percent Strand
Best4-PB 526 CG7259-PB 1..526 21..546 2786 100 Plus
Best1-PA 721 CG6264-PA 1..422 21..444 1277 55.9 Plus
Best1-PD 736 CG6264-PD 1..422 21..444 1277 55.9 Plus
Best1-PB 769 CG6264-PB 1..404 21..424 1277 58.2 Plus
Best1-PC 784 CG6264-PC 1..404 21..424 1277 58.2 Plus
Best3-PA 535 CG12327-PA 1..470 21..482 1189 48.8 Plus
Best2-PA 809 CG10173-PA 1..507 21..484 934 39 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:37:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12232-PA 510 GI12232-PA 1..476 21..520 1580 60.5 Plus
Dmoj\GI24037-PA 782 GI24037-PA 1..375 21..390 1336 62.1 Plus
Dmoj\GI12230-PA 541 GI12230-PA 1..385 21..404 1194 55.7 Plus
Dmoj\GI13224-PA 803 GI13224-PA 1..359 21..403 887 45.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:37:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25692-PA 514 GL25692-PA 1..514 21..523 1781 65.4 Plus
Dper\GL22521-PA 783 GL22521-PA 48..309 138..403 688 49.1 Plus
Dper\GL25671-PA 215 GL25671-PA 1..201 21..221 620 54.2 Plus
Dper\GL23840-PA 215 GL23840-PA 25..175 298..451 399 51 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:37:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20216-PA 514 GA20216-PA 1..514 21..523 1780 65.4 Plus
Dpse\GA19476-PA 765 GA19476-PA 1..446 21..459 1319 53.5 Plus
Dpse\GA19476-PB 721 GA19476-PB 1..375 21..390 1314 60.8 Plus
Dpse\GA11558-PA 522 GA11558-PA 1..373 21..390 1216 56.8 Plus
Dpse\GA24547-PA 841 GA24547-PA 1..384 21..403 952 46.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:37:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25520-PA 526 GM25520-PA 1..526 21..546 2810 99 Plus
Dsec\GM26180-PA 767 GM26180-PA 1..448 21..459 1335 54.3 Plus
Dsec\GM24494-PA 533 GM24494-PA 1..367 21..387 1203 57.2 Plus
Dsec\GM13845-PA 809 GM13845-PA 1..384 21..403 952 46.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:37:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14535-PA 526 GD14535-PA 1..526 21..546 2813 99.2 Plus
Dsim\GD12566-PA 533 GD12566-PA 1..367 21..387 1202 57.2 Plus
Dsim\GD13131-PA 809 GD13131-PA 1..384 21..403 953 46.8 Plus
Dsim\GD20729-PA 417 GD20729-PA 1..71 322..390 253 63.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:37:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11464-PA 530 GJ11464-PA 1..503 21..521 1522 62.2 Plus
Dvir\GJ23667-PA 780 GJ23667-PA 1..441 21..459 1338 56 Plus
Dvir\GJ11462-PA 556 GJ11462-PA 1..396 21..412 1179 53.1 Plus
Dvir\GJ11999-PA 822 GJ11999-PA 1..372 21..385 958 48.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:37:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20485-PA 464 GK20485-PA 1..460 21..533 1546 61 Plus
Dwil\GK22536-PA 744 GK22536-PA 1..375 21..390 1328 61.9 Plus
Dwil\GK20484-PA 564 GK20484-PA 1..372 21..390 1166 53.2 Plus
Dwil\GK13577-PA 838 GK13577-PA 1..370 21..385 955 48 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:37:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22233-PA 526 GE22233-PA 1..526 21..546 2549 94.3 Plus
Dyak\GE24699-PA 769 GE24699-PA 1..406 21..426 1330 57.9 Plus
Dyak\GE19853-PA 535 GE19853-PA 1..471 21..482 1211 49.1 Plus
Dyak\GE20488-PA 809 GE20488-PA 1..384 21..403 952 46.8 Plus

IP02836.hyp Sequence

Translation from 33 to 1642

> IP02836.hyp
LKIIQYEFLVMTVTYTSRVSTSSVLSNFLGLLVRWRGSIYKLIWLDLIVF
FGLYCLLAITYRLLVNEEGKRFFEAIMSYCEKNGSLIPLSFVLGFFVRIV
MNRWWDQYTTIPWPDGIAILISTSIHGSDDRARVMRRTILRYVCLCQVIV
FTMISPRVKRRFPTYTQIIEAGFLLENEKKIIEAMDQAFPSYPKHWMPIV
WAASIVMRARRENKIRDDYAVKTIIDELNQLRGNCGFLLYYDWISVPLVY
TQVVTVATYSFFLFSVLGQQWNESHSDEDGTRIRRWFPILTVLQFFFYMG
WLKVAETLINPFGEDDDDFELNWIIDRNLTVSYCIVDEMHQEHPELVKDQ
YWEEVFPNEIPYAQPKMRQNPPAASTAYMESQSKLQKRHESAMSTLSTRS
RNNFRQNFLGRPSATGSYSDSIQMEDGPSRVTFSENQFDLPHDEANSSHK
PSQSTIDFNDLIEQRRRERRERIRHRFLDMQSTHLRHDTSGAPYTITVLR
PPSDETLSESQEAGDRAQQDPSGSKEPPPNKTEKQD*

IP02836.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:54:37
Subject Length Description Subject Range Query Range Score Percent Strand
Best4-PB 526 CG7259-PB 1..526 11..536 2786 100 Plus
Best1-PA 721 CG6264-PA 1..422 11..434 1277 55.9 Plus
Best1-PD 736 CG6264-PD 1..422 11..434 1277 55.9 Plus
Best1-PB 769 CG6264-PB 1..404 11..414 1277 58.2 Plus
Best1-PC 784 CG6264-PC 1..404 11..414 1277 58.2 Plus