Clone IP03156 Report

Search the DGRC for IP03156

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:31
Well:56
Vector:pOT2
Associated Gene/TranscriptActn3-RA
Protein status:IP03156.pep: gold
Preliminary Size:1708
Sequenced Size:1861

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8953 2005-01-01 Successful iPCR screen
Actn3 2008-04-29 Release 5.5 accounting
Actn3 2008-08-15 Release 5.9 accounting
Actn3 2008-12-18 5.12 accounting

Clone Sequence Records

IP03156.complete Sequence

1861 bp (1861 high quality bases) assembled on 2005-04-11

GenBank Submission: BT023197

> IP03156.complete
ACTTGATCACACTTTCGTTCACTTAATTATCACTGGCCATGGGTTCGTTA
TTAAAGGAGCTCGTATGCCAGATAAAAGAAATACAGTCCGATTTGAAGAA
TGACACCCATGTAGGTGCGACTAACGGGGAATGGAGCCGAAAAGAAGTTC
GCAAAATGAAGATTTGTTTAGGGAAGGTAATTCTTTTCACAAGGTCCTTG
AGGGAGACATTTGCGGAAAGTCAAGAGTCCGGGAATCAAGAACAATCCTC
GAAGGCTTTAGTTCTGTTACGATGTACTCGGTACATTAAGCGCTTGTCTA
TGGTCCTGACACTACTTGAGACTGAAGAAGGCTTAAATAAAGTGAATAAA
ACGCTCTTCCAACTGGACGTTGATACAATTCTTTTTGAACTGGAGTGTAT
TGTCAAGGAGGCCTTGAAATCTCTTTCAGTGTCGCGATTCCCGTACCAAG
AGTCATCTTGTACCACTACAGAAACTTTAGTAAAAGAAAGTCCCATTTGT
GAGTTGAATAAATTGCGGCTAATGTTGAAAAATGAGAAGAAAAAGCAGGA
GCTAGAAATAATGGGCCACAATTTAATCATAATGAAGGAGAAAACTTTGG
TTCTTCAGGCCCGTAAAAATCAAAGGGCAGCGGAAAATAGACTAGCTGAG
AAGCAGGATCGCATCAAGGCACTCGAAGAATGTCTAGCCAACTGCAAGTT
TCAGTTGAAGAACGTCAACGAACAGTATCAGAAATTGAAGAAAGCCAGCA
ATCAATTAATAAGGGAAAGTAATCAGATTAGGCCACAGAAAAGTTGGAGT
GTGCTAGTAGGGCGGAGAAAAGGCAGAATATCGACTAGGACCAGTTTTGT
ATGGAAGTCGCTTAAGCTAGATCAATCGGAACGGGAAACTCTTATGGGTC
TAAAGAAGCGCCTTAGTGAGGAAAAAGAAATTAAGTTGAGAGCCAAGACT
GAAATGAGTAAAATCAGAAAGGCCATGGACGAGCTGTGTCTTGGTAAAGG
AGAACTTCAATTTGGATTACAAAATAAGAGTGAAACAGATGCCAGTAAGG
ATACCTTGGTTGTCATTGATAAAGCCTTGAGTGCTCTTTCCCAATACAAC
ACGCTTAAATTTCCGGATTGCAACTTCCAATTGAGCCGCCTTATGAAATC
TCTTTATGGCAGCTTAACTACGATCCGAGATAGATGGATCCGAAAAATTA
GCAGTGCAGTTGAACCAACACCAAGCTGTTTAAAAAGTAATACTCCCTCA
TTACCAGAGCCCCCACTGACGGTTTCTTTCTCAACCGACCTATTTTGGGA
CAAGATATACAAGCCCTGCACCCAATCAAATCCTGTTATGCCCAATACGA
GTTTGATCCCGGTTCTGCCGAAGAAACAGCCAAAATCGTTACAGCTAACC
TGTGAGCCTTCAGTTCAATACAAAGTGGCGTCCCGCTCTTCCACTACAGC
ACCGGTGCCGAAGTACCTGGGAAAAACATTCGGAGATCGACGTTTAAGCC
TGCTCCGCTGGTGCCAAGAGAGGGTTAAACCGTACGGAATTCCAATGTAC
GAGTTTAGTGCCTCATGGATTAGTGGGCGTGCTTTGTGCGCCATCATCCA
CTCCTATCTTCCCGACCTCATTGACAAAACATACCTCGCCAAAAAGAAGC
CCGAAGAAGTCTTAGCATATGGCATTAAAGTGGCCAAATCAATTGGTGTT
TCTGATTCCGTCGATCTAATTAGGGAGCTTCGGCAGGGGCGTCCCAACCT
AGAGAAGATCGTCGATTTCGTGGAGGAGCTGCAAGGCTATCTTGATATGT
ATGATACAAATATATGAGTAAAAAATTGAAATTTTAAAAAAAAAAAAAAA
AAAAAAAAAAA

IP03156.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:39:03
Subject Length Description Subject Range Query Range Score Percent Strand
Actn3-RA 1991 Actn3-RA 94..1928 1..1835 9175 100 Plus
Actn3.b 1984 Actn3.b 94..1928 1..1835 9175 100 Plus
Actn3.a 1991 Actn3.a 94..1928 1..1835 9175 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:31:49
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 12800361..12801922 1835..274 7795 99.9 Minus
chr3R 27901430 chr3R 12801975..12802250 276..1 1380 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:37:01 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:31:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16975885..16977446 1835..274 7810 100 Minus
3R 32079331 3R 16977499..16977774 276..1 1380 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:29:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 16716716..16718277 1835..274 7810 100 Minus
3R 31820162 3R 16718330..16718605 276..1 1380 100 Minus
Blast to na_te.dros performed on 2019-03-16 13:31:48 has no hits.

IP03156.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:32:55 Download gff for IP03156.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 12801978..12802250 1..273 100   Minus
chr3R 12800361..12801922 274..1835 99 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:19:46 Download gff for IP03156.complete
Subject Subject Range Query Range Percent Splice Strand
Actn3-RA 1..1662 156..1817 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:05:12 Download gff for IP03156.complete
Subject Subject Range Query Range Percent Splice Strand
Actn3-RA 1..1662 156..1817 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:01:05 Download gff for IP03156.complete
Subject Subject Range Query Range Percent Splice Strand
Actn3-RA 1..1662 156..1817 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:50:17 Download gff for IP03156.complete
Subject Subject Range Query Range Percent Splice Strand
Actn3-RA 1..1662 156..1817 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:14:03 Download gff for IP03156.complete
Subject Subject Range Query Range Percent Splice Strand
Actn3-RA 1..1662 156..1817 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:53:02 Download gff for IP03156.complete
Subject Subject Range Query Range Percent Splice Strand
Actn3-RA 1..1708 115..1822 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:05:12 Download gff for IP03156.complete
Subject Subject Range Query Range Percent Splice Strand
Actn3-RA 22..1856 1..1835 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:01:05 Download gff for IP03156.complete
Subject Subject Range Query Range Percent Splice Strand
Actn3-RA 22..1856 1..1835 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:50:18 Download gff for IP03156.complete
Subject Subject Range Query Range Percent Splice Strand
Actn3-RA 1..1708 115..1822 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:14:03 Download gff for IP03156.complete
Subject Subject Range Query Range Percent Splice Strand
Actn3-RA 22..1856 1..1835 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:32:55 Download gff for IP03156.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16975885..16977446 274..1835 100 <- Minus
3R 16977502..16977774 1..273 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:32:55 Download gff for IP03156.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16975885..16977446 274..1835 100 <- Minus
3R 16977502..16977774 1..273 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:32:55 Download gff for IP03156.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16975885..16977446 274..1835 100 <- Minus
3R 16977502..16977774 1..273 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:01:05 Download gff for IP03156.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12803224..12803496 1..273 100   Minus
arm_3R 12801607..12803168 274..1835 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:25:01 Download gff for IP03156.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16716716..16718277 274..1835 100 <- Minus
3R 16718333..16718605 1..273 100   Minus

IP03156.pep Sequence

Translation from 38 to 1816

> IP03156.pep
MGSLLKELVCQIKEIQSDLKNDTHVGATNGEWSRKEVRKMKICLGKVILF
TRSLRETFAESQESGNQEQSSKALVLLRCTRYIKRLSMVLTLLETEEGLN
KVNKTLFQLDVDTILFELECIVKEALKSLSVSRFPYQESSCTTTETLVKE
SPICELNKLRLMLKNEKKKQELEIMGHNLIIMKEKTLVLQARKNQRAAEN
RLAEKQDRIKALEECLANCKFQLKNVNEQYQKLKKASNQLIRESNQIRPQ
KSWSVLVGRRKGRISTRTSFVWKSLKLDQSERETLMGLKKRLSEEKEIKL
RAKTEMSKIRKAMDELCLGKGELQFGLQNKSETDASKDTLVVIDKALSAL
SQYNTLKFPDCNFQLSRLMKSLYGSLTTIRDRWIRKISSAVEPTPSCLKS
NTPSLPEPPLTVSFSTDLFWDKIYKPCTQSNPVMPNTSLIPVLPKKQPKS
LQLTCEPSVQYKVASRSSTTAPVPKYLGKTFGDRRLSLLRWCQERVKPYG
IPMYEFSASWISGRALCAIIHSYLPDLIDKTYLAKKKPEEVLAYGIKVAK
SIGVSDSVDLIRELRQGRPNLEKIVDFVEELQGYLDMYDTNI*

IP03156.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 15:31:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17920-PA 323 GF17920-PA 188..320 456..586 387 50.4 Plus
Dana\GF22063-PA 1120 GF22063-PA 1009..1119 477..586 182 31.5 Plus
Dana\GF17920-PA 323 GF17920-PA 1..179 44..229 177 31.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 15:31:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16805-PA 557 GG16805-PA 1..554 40..586 1940 70.3 Plus
Dere\GG12754-PA 1105 GG12754-PA 994..1104 477..586 180 34.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 15:31:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24633-PA 987 GH24633-PA 876..986 477..586 183 31.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:13:22
Subject Length Description Subject Range Query Range Score Percent Strand
Actn3-PA 553 CG8953-PA 1..553 40..592 2808 100 Plus
CG13366-PE 950 CG13366-PE 307..949 5..586 201 21.3 Plus
CG13366-PA 950 CG13366-PA 307..949 5..586 201 21.3 Plus
CG13366-PF 1094 CG13366-PF 451..1093 5..586 201 21.3 Plus
CG13366-PC 1094 CG13366-PC 451..1093 5..586 201 21.3 Plus
CG13366-PB 1094 CG13366-PB 451..1093 5..586 201 21.3 Plus
CG13366-PD 949 CG13366-PD 307..948 5..586 195 21.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 15:31:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19826-PA 282 GI19826-PA 155..272 466..586 300 49.6 Plus
Dmoj\GI15822-PA 1142 GI15822-PA 1031..1133 477..578 176 33 Plus
Dmoj\GI16361-PA 289 GI16361-PA 186..281 488..581 151 30.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 15:31:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21395-PA 1156 GL21395-PA 1045..1155 477..586 186 31.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 15:31:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA30034-PA 465 GA30034-PA 342..455 473..586 331 53.5 Plus
Dpse\GA12234-PA 1162 GA12234-PA 1051..1161 477..586 186 31.5 Plus
Dpse\GA30034-PA 465 GA30034-PA 3..210 43..224 158 27.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 15:31:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15399-PA 558 GM15399-PA 1..558 40..592 2411 83.3 Plus
Dsec\GM19034-PA 1098 GM19034-PA 987..1097 477..586 180 34.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 15:31:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20264-PA 558 GD20264-PA 1..558 40..592 2403 83.2 Plus
Dsim\GD16472-PA 1103 GD16472-PA 992..1102 477..586 181 34.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 15:31:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18586-PA 277 GJ18586-PA 140..258 463..581 303 49.6 Plus
Dvir\GJ18675-PA 1070 GJ18675-PA 905..1069 430..586 198 29.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 15:31:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16173-PA 1126 GK16173-PA 973..1125 433..586 187 30.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 15:31:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26122-PA 566 GE26122-PA 1..563 40..586 1980 70.5 Plus
Dyak\GE16579-PA 952 GE16579-PA 841..951 477..586 181 34.5 Plus

IP03156.hyp Sequence

Translation from 38 to 1816

> IP03156.hyp
MGSLLKELVCQIKEIQSDLKNDTHVGATNGEWSRKEVRKMKICLGKVILF
TRSLRETFAESQESGNQEQSSKALVLLRCTRYIKRLSMVLTLLETEEGLN
KVNKTLFQLDVDTILFELECIVKEALKSLSVSRFPYQESSCTTTETLVKE
SPICELNKLRLMLKNEKKKQELEIMGHNLIIMKEKTLVLQARKNQRAAEN
RLAEKQDRIKALEECLANCKFQLKNVNEQYQKLKKASNQLIRESNQIRPQ
KSWSVLVGRRKGRISTRTSFVWKSLKLDQSERETLMGLKKRLSEEKEIKL
RAKTEMSKIRKAMDELCLGKGELQFGLQNKSETDASKDTLVVIDKALSAL
SQYNTLKFPDCNFQLSRLMKSLYGSLTTIRDRWIRKISSAVEPTPSCLKS
NTPSLPEPPLTVSFSTDLFWDKIYKPCTQSNPVMPNTSLIPVLPKKQPKS
LQLTCEPSVQYKVASRSSTTAPVPKYLGKTFGDRRLSLLRWCQERVKPYG
IPMYEFSASWISGRALCAIIHSYLPDLIDKTYLAKKKPEEVLAYGIKVAK
SIGVSDSVDLIRELRQGRPNLEKIVDFVEELQGYLDMYDTNI*

IP03156.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:57:53
Subject Length Description Subject Range Query Range Score Percent Strand
Actn3-PA 553 CG8953-PA 1..553 40..592 2808 100 Plus
CG13366-PE 950 CG13366-PE 307..949 5..586 201 21.3 Plus
CG13366-PA 950 CG13366-PA 307..949 5..586 201 21.3 Plus
CG13366-PF 1094 CG13366-PF 451..1093 5..586 201 21.3 Plus
CG13366-PC 1094 CG13366-PC 451..1093 5..586 201 21.3 Plus