Clone IP03290 Report

Search the DGRC for IP03290

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:32
Well:90
Vector:pOT2
Associated Gene/TranscriptCG10731-RB
Protein status:IP03290.pep: gold
Preliminary Size:1539
Sequenced Size:859

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10731-RA 2009-01-21 est gleaning

Clone Sequence Records

IP03290.complete Sequence

859 bp assembled on 2012-11-08

GenBank Submission: BT149872.1

> IP03290.complete
CAACGGACGGGCTCAGCTGTTTCGCCCATCGCCAAAATGTTGTTGTTAAA
TAAGCTGCCCAGGATAACGCAACTACTCGCCAGAGATCCCAAGGATCAGC
GAGGCATCTGGGGCTATGTGGCTGTCGCCTTCAACCAGGTGGACGCGGAA
CGTCTGTCGAAAGTGGGTGCCAACCGCCTGTGCGCCGAGTGGATTATTAA
AAACGGAGGCGGAGTGCGCTTTGTGGAGAGTCCCTCCAGGCTGTGGAAGG
ATTACAACTCGTTGCCGGGAGAGAACACGCAGTTCTGCATCAAAGTGGTG
GACGCGTCAAATTCGTCAATCATGAAAATAGGACTGGAGCACTTAAAGGA
CTGCCGGAGCATCGATACAGTCATCTTCCACAATTGCAAGCACTTGGAGA
ACGATGGCTTGGAGGGACTTCATCACATCAGCAGCTCCCTGCAGCGACTC
CAGGTCTCCGGATGTTACAACATCACGGATTCCGGTCTTGCTGTGATCGG
GGAGCTCAAGAATCTGCGACAACTGCTCATATTCGATATGATTTTCGTGA
AGAACATGGAGGCTGTAGCCGCCTCTCTGAAAAAACAGCTTCCCAGCTGT
GATATCAAGGCTACCAAGATGGGCCTAACTCTGAAGCCCAAAGAATAATC
CCCAGCAGAACACGAACTTATTGGTTTGGTCCAATAAAACCTTTTGCAGT
GTTGAGAAAAGCTAAGGCTTGCACAGTGGGTAAAAATTGATTTCAATAAG
TTTAATAGTCATAAACCTCAAATGAAATGTTATTGCATATAATTAACTCC
TTCAATTGATATAAATATATTTATTGACACATGAACTATAAAAAAAAAAA
AAAAAAAAA

IP03290.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:02:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 12036131..12036969 839..1 4180 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:02:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16148811..16149650 840..1 4200 100 Minus
Blast to na_te.dros performed 2019-03-15 14:02:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmir\worf 4174 Dmir\worf WORF 4174bp Derived from AY144572. 2854..2903 621..574 110 72 Minus

IP03290.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:03:42 Download gff for IP03290.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 12036131..12036969 1..839 99   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2012-11-08 10:56:53 Download gff for IP03290.complete
Subject Subject Range Query Range Percent Splice Strand
CG10731-RA 1..612 37..648 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:16:17 Download gff for IP03290.complete
Subject Subject Range Query Range Percent Splice Strand
CG10731-RA 1..612 37..648 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:48:18 Download gff for IP03290.complete
Subject Subject Range Query Range Percent Splice Strand
CG10731-RC 1..612 37..648 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-08 10:56:52 Download gff for IP03290.complete
Subject Subject Range Query Range Percent Splice Strand
CG10731-RA 1..696 35..732 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:16:17 Download gff for IP03290.complete
Subject Subject Range Query Range Percent Splice Strand
Ext2-RA 1..719 12..732 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:48:18 Download gff for IP03290.complete
Subject Subject Range Query Range Percent Splice Strand
CG10731-RC 146..984 1..839 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:03:42 Download gff for IP03290.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16148812..16149650 1..839 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:03:42 Download gff for IP03290.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16148812..16149650 1..839 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:03:42 Download gff for IP03290.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16148812..16149650 1..839 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:16:17 Download gff for IP03290.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12036317..12037155 1..839 100   Minus

IP03290.pep Sequence

Translation from 0 to 647

> IP03290.pep
QRTGSAVSPIAKMLLLNKLPRITQLLARDPKDQRGIWGYVAVAFNQVDAE
RLSKVGANRLCAEWIIKNGGGVRFVESPSRLWKDYNSLPGENTQFCIKVV
DASNSSIMKIGLEHLKDCRSIDTVIFHNCKHLENDGLEGLHHISSSLQRL
QVSGCYNITDSGLAVIGELKNLRQLLIFDMIFVKNMEAVAASLKKQLPSC
DIKATKMGLTLKPKE*

IP03290.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:06:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13048-PA 226 GF13048-PA 1..221 13..215 818 71.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:06:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22300-PA 202 GG22300-PA 1..202 14..215 1040 96 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:06:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23001-PA 213 GH23001-PA 11..211 10..212 760 70 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:28:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG10731-PB 203 CG10731-PB 1..203 13..215 1052 100 Plus
CG10731-PC 203 CG10731-PC 1..203 13..215 1052 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:06:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18967-PA 284 GI18967-PA 109..284 34..209 739 75.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:07:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11395-PA 213 GL11395-PA 33..213 34..214 807 80.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:07:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24708-PA 213 GA24708-PA 33..213 34..214 804 80.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:07:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20089-PA 202 GM20089-PA 1..202 14..215 1068 99 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:07:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25566-PA 202 GD25566-PA 1..202 14..215 1073 99.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:07:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20911-PA 195 GJ20911-PA 16..194 34..212 766 76.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:07:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19097-PA 210 GK19097-PA 29..207 34..212 764 74.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:07:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14096-PA 203 GE14096-PA 1..203 13..215 1055 97 Plus

IP03290.hyp Sequence

Translation from 0 to 647

> IP03290.hyp
QRTGSAVSPIAKMLLLNKLPRITQLLARDPKDQRGIWGYVAVAFNQVDAE
RLSKVGANRLCAEWIIKNGGGVRFVESPSRLWKDYNSLPGENTQFCIKVV
DASNSSIMKIGLEHLKDCRSIDTVIFHNCKHLENDGLEGLHHISSSLQRL
QVSGCYNITDSGLAVIGELKNLRQLLIFDMIFVKNMEAVAASLKKQLPSC
DIKATKMGLTLKPKE*

IP03290.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:37:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG10731-PB 203 CG10731-PB 1..203 13..215 1052 100 Plus
CG10731-PC 203 CG10731-PC 1..203 13..215 1052 100 Plus