Clone IP03305 Report

Search the DGRC for IP03305

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:33
Well:5
Vector:pOT2
Associated Gene/TranscriptIrk3-RA
Protein status:IP03305.pep: gold
Preliminary Size:1500
Sequenced Size:1807

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10369 2005-01-01 Successful iPCR screen
Irk3 2008-04-29 Release 5.5 accounting
Irk3 2008-08-15 Release 5.9 accounting
Irk3 2008-12-18 5.12 accounting

Clone Sequence Records

IP03305.complete Sequence

1807 bp (1807 high quality bases) assembled on 2006-01-24

GenBank Submission: BT024418

> IP03305.complete
AGGCAATCAAGTTGAGCTCTCGCTCTCACTATAAATCGTAGCCGTGGGCC
ACTGCAGCCTAATTCAATTCAATTAAAATTAAAACGCAGATCTACGCGTT
CGAGTGAAATTGCCCCAAATTTCCGACAATTATAGGCCACGCTCTCGTCA
GTGATTCCGCGTCGACGTAGGCGGCAATAGCTGAATCCCGGTCATGCAAT
CGGACGCATCTCCCCTGGGAGCTGCTGCCACGGATTCCCTAACCATGCAT
CGCTCAACCTCCATGCCGGTGAAGCCCAAGCCACTGGAGCAGAAGCCACT
GCTCCGTTCCTCCGAAAAGGAGACGGTCAATGCGTCCGATTACTATCCGG
AGAGTCCGGGATTCGTACGGCGCAGAAGGTCAAAAGCAGCCGGCGATCAC
CTGGAAACACGCAGCGAGCAAAATTTCCCCTACGCACACGACTGGGCGGG
CAGTACGATTGAGCTTACTCCAGATTTGGGATCCGGACCGCGGACTTCCT
CCTCCGATGGACTGAGACGCAGCCTTAATCGCGTGATGGAAAAGAACGGC
AAGGAGAACGTTGTGTTCCGCCGCATTCCGGAGAAGTCATGGCGCTACAT
GCGGGATCTGGTCACCACGCTGATGGAACTGGAGTGGAAGTATATGCTGA
CCCTGTTCCTGGGCAGCTACTTCCTCAGCTGGCTGCTCTTCGCCGCCCTC
TGCTACGTGGTGGCCTACTCGCACGGTGACTTCATCTTCGATCCGGTAAG
TGGCAAGCGAATGGGCGAGGGCGTGGATCCCTGCATCTACGGGGTGCACA
GCTGGGTGGCCATGATCATATACTCTGTGGAAACACAGACGACCCTCGGA
TTCGGCGAAAAATACGCCAGCGAGGAGTGTCCGGAGACGATCTTCCTGTT
CGTCATGCAGATGTTGAGTGCGGCCCTAATCGAGGGCTGTATGGTGAGCG
TGATCTATGCCAAGACCGCACGGCCGGCGAGGCAGCTGACCAAGCTGAAG
TTCAGCGATAAGGCGGTGATCTGTTATCGCGACGGCAGGCTTTGTTTGCT
CTTCCGCGTCTGTGATCCCCGCGAGCAGCAGTCCATCGAGTCCAAGATAC
GAGTCTACATCATCGTGGACAAACGCACGCGCGAGGGTGAGACTATAAAA
AGTCACGTGGAACTGAAGCTGGAGGGGAATGGGGAGCAGATTATTCTCTG
GCCCGATGTGGTGTGCCATGTCATCGATGAGACCAGCCCGTTGTCTCAGT
TCACCACAGCGAAACTCTTCAATGCTGCCCAATTTGAGTTGTATGTGTCC
ATTGTGGGCACTTCGCCTGCCACAGCGCAGATGACGGAGGCCAAGACGTC
CTATCTGCCAAGGGAGATTTTCTGGGGCCAGCGGTTCGTCAATATCATCC
ATTACGACGCCCAAAACGAGCGCTACATTGTCGACTACGAGAACTTCAAC
AGGACCATATCGGTGGACATGCCCATGACGAATCCGAAAAATGATCACTT
AAAGCTAGAGTACAGAAAGTGAAAAGGGTTTTAAAAAATACATTTTAAGA
AGCTTTCTTATCGCATTACACTTTTGGCAGCACTATATTAATAACGAATT
CAAAAACATTTTATAGACCGAGGTAAATATTCTAAAACATTTGTAAAATA
TCTAAATGGATCGATTAACGAATTAAAATTTACATAAAACTCATGAGACG
CCAAAACCTATTTTGAAAAATGTTACTAATAGTTGATAATAACAATAAAT
TAAATACAATAATAACAATGTTTCAATTAATTATTAACAAAAAAAAAAAA
AAAAAAA

IP03305.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:20:35
Subject Length Description Subject Range Query Range Score Percent Strand
Irk3-RA 1876 Irk3-RA 89..1876 1..1788 8940 100 Plus
Irk3.a 1835 Irk3.a 471..1835 424..1788 6825 100 Plus
Irk3-RB 2044 Irk3-RB 879..2044 623..1788 5830 100 Plus
Irk3-RB 2044 Irk3-RB 86..707 1..622 3110 100 Plus
Irk3.a 1835 Irk3.a 36..459 1..424 2120 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:34:26
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 18709816..18710479 1788..1125 3320 100 Minus
chr2L 23010047 chr2L 18712051..18712473 423..1 2115 100 Minus
chr2L 23010047 chr2L 18710934..18711334 1018..618 1990 99.8 Minus
chr2L 23010047 chr2L 18711697..18711895 622..424 980 99.5 Minus
chr2L 23010047 chr2L 18710749..18710856 1125..1018 540 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:37:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:34:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18711070..18711734 1789..1125 3325 100 Minus
2L 23513712 2L 18713306..18713728 423..1 2115 100 Minus
2L 23513712 2L 18712189..18712589 1018..618 1990 99.8 Minus
2L 23513712 2L 18712952..18713150 622..424 995 100 Minus
2L 23513712 2L 18712004..18712111 1125..1018 540 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:13:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18711070..18711734 1789..1125 3325 100 Minus
2L 23513712 2L 18713306..18713728 423..1 2115 100 Minus
2L 23513712 2L 18712189..18712589 1018..618 1990 99.7 Minus
2L 23513712 2L 18712952..18713150 622..424 995 100 Minus
2L 23513712 2L 18712004..18712111 1125..1018 540 100 Minus
Blast to na_te.dros performed 2019-03-16 13:34:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 2353..2397 131..175 126 75.6 Plus
roo 9092 roo DM_ROO 9092bp 8501..8555 56..110 113 67.3 Plus

IP03305.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:35:08 Download gff for IP03305.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 18709816..18710478 1126..1788 100 <- Minus
chr2L 18710749..18710855 1019..1125 100 <- Minus
chr2L 18710934..18711329 623..1018 100 <- Minus
chr2L 18711697..18711895 424..622 99 <- Minus
chr2L 18712051..18712473 1..423 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:20:04 Download gff for IP03305.complete
Subject Subject Range Query Range Percent Splice Strand
Irk3-RA 1..1329 194..1522 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:36:12 Download gff for IP03305.complete
Subject Subject Range Query Range Percent Splice Strand
Irk3-RA 1..1329 194..1522 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:20:19 Download gff for IP03305.complete
Subject Subject Range Query Range Percent Splice Strand
Irk3-RA 1..1329 194..1522 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:10:50 Download gff for IP03305.complete
Subject Subject Range Query Range Percent Splice Strand
Irk3-RA 1..1329 194..1522 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:22:10 Download gff for IP03305.complete
Subject Subject Range Query Range Percent Splice Strand
Irk3-RA 1..1329 194..1522 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:07:39 Download gff for IP03305.complete
Subject Subject Range Query Range Percent Splice Strand
Irk3-RA 36..1823 1..1788 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:36:12 Download gff for IP03305.complete
Subject Subject Range Query Range Percent Splice Strand
Irk3-RA 36..1823 1..1788 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:20:19 Download gff for IP03305.complete
Subject Subject Range Query Range Percent Splice Strand
Irk3-RA 21..1808 1..1788 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:10:50 Download gff for IP03305.complete
Subject Subject Range Query Range Percent Splice Strand
Irk3-RA 36..1823 1..1788 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:22:10 Download gff for IP03305.complete
Subject Subject Range Query Range Percent Splice Strand
Irk3-RA 21..1808 1..1788 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:35:08 Download gff for IP03305.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18712189..18712584 623..1018 100 <- Minus
2L 18712952..18713150 424..622 100 <- Minus
2L 18711071..18711733 1126..1788 100 <- Minus
2L 18712004..18712110 1019..1125 100 <- Minus
2L 18713306..18713728 1..423 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:35:08 Download gff for IP03305.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18712189..18712584 623..1018 100 <- Minus
2L 18712952..18713150 424..622 100 <- Minus
2L 18711071..18711733 1126..1788 100 <- Minus
2L 18712004..18712110 1019..1125 100 <- Minus
2L 18713306..18713728 1..423 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:35:08 Download gff for IP03305.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18712189..18712584 623..1018 100 <- Minus
2L 18712952..18713150 424..622 100 <- Minus
2L 18711071..18711733 1126..1788 100 <- Minus
2L 18712004..18712110 1019..1125 100 <- Minus
2L 18713306..18713728 1..423 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:20:19 Download gff for IP03305.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18711071..18711733 1126..1788 100 <- Minus
arm_2L 18712004..18712110 1019..1125 100 <- Minus
arm_2L 18712189..18712584 623..1018 100 <- Minus
arm_2L 18712952..18713150 424..622 100 <- Minus
arm_2L 18713306..18713728 1..423 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:59:44 Download gff for IP03305.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18711071..18711733 1126..1788 100 <- Minus
2L 18712004..18712110 1019..1125 100 <- Minus
2L 18712189..18712584 623..1018 100 <- Minus
2L 18712952..18713150 424..622 100 <- Minus
2L 18713306..18713728 1..423 100   Minus

IP03305.hyp Sequence

Translation from 193 to 1521

> IP03305.hyp
MQSDASPLGAAATDSLTMHRSTSMPVKPKPLEQKPLLRSSEKETVNASDY
YPESPGFVRRRRSKAAGDHLETRSEQNFPYAHDWAGSTIELTPDLGSGPR
TSSSDGLRRSLNRVMEKNGKENVVFRRIPEKSWRYMRDLVTTLMELEWKY
MLTLFLGSYFLSWLLFAALCYVVAYSHGDFIFDPVSGKRMGEGVDPCIYG
VHSWVAMIIYSVETQTTLGFGEKYASEECPETIFLFVMQMLSAALIEGCM
VSVIYAKTARPARQLTKLKFSDKAVICYRDGRLCLLFRVCDPREQQSIES
KIRVYIIVDKRTREGETIKSHVELKLEGNGEQIILWPDVVCHVIDETSPL
SQFTTAKLFNAAQFELYVSIVGTSPATAQMTEAKTSYLPREIFWGQRFVN
IIHYDAQNERYIVDYENFNRTISVDMPMTNPKNDHLKLEYRK*

IP03305.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:00:43
Subject Length Description Subject Range Query Range Score Percent Strand
Irk3-PA 442 CG10369-PA 1..442 1..442 2315 100 Plus
Irk3-PD 446 CG10369-PD 1..446 1..442 2300 99.1 Plus
Irk3-PC 205 CG10369-PC 1..144 1..144 743 99.3 Plus
Irk1-PH 526 CG44159-PH 12..354 108..442 630 36.9 Plus
Irk1-PC 526 CG44159-PC 12..354 108..442 630 36.9 Plus

IP03305.pep Sequence

Translation from 193 to 1521

> IP03305.pep
MQSDASPLGAAATDSLTMHRSTSMPVKPKPLEQKPLLRSSEKETVNASDY
YPESPGFVRRRRSKAAGDHLETRSEQNFPYAHDWAGSTIELTPDLGSGPR
TSSSDGLRRSLNRVMEKNGKENVVFRRIPEKSWRYMRDLVTTLMELEWKY
MLTLFLGSYFLSWLLFAALCYVVAYSHGDFIFDPVSGKRMGEGVDPCIYG
VHSWVAMIIYSVETQTTLGFGEKYASEECPETIFLFVMQMLSAALIEGCM
VSVIYAKTARPARQLTKLKFSDKAVICYRDGRLCLLFRVCDPREQQSIES
KIRVYIIVDKRTREGETIKSHVELKLEGNGEQIILWPDVVCHVIDETSPL
SQFTTAKLFNAAQFELYVSIVGTSPATAQMTEAKTSYLPREIFWGQRFVN
IIHYDAQNERYIVDYENFNRTISVDMPMTNPKNDHLKLEYRK*

IP03305.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 13:18:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14817-PA 438 GF14817-PA 1..438 1..442 2091 87.4 Plus
Dana\GF16984-PA 570 GF16984-PA 55..397 108..442 653 37.9 Plus
Dana\GF18763-PA 453 GF18763-PA 92..420 107..432 581 34.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 13:18:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21688-PA 442 GG21688-PA 1..442 1..442 2299 95.7 Plus
Dere\GG11193-PA 551 GG11193-PA 41..383 108..442 648 37 Plus
Dere\GG12432-PA 437 GG12432-PA 64..404 95..432 593 33.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 13:18:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10563-PA 441 GH10563-PA 2..441 6..442 1713 72.5 Plus
Dgri\GH19549-PA 561 GH19549-PA 41..380 108..439 631 37 Plus
Dgri\GH20768-PA 535 GH20768-PA 162..502 95..432 601 34.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:03:05
Subject Length Description Subject Range Query Range Score Percent Strand
Irk3-PA 442 CG10369-PA 1..442 1..442 2315 100 Plus
Irk3-PD 446 CG10369-PD 1..446 1..442 2300 99.1 Plus
Irk3-PC 205 CG10369-PC 1..144 1..144 743 99.3 Plus
Irk1-PH 526 CG44159-PH 12..354 108..442 630 36.9 Plus
Irk1-PC 526 CG44159-PC 12..354 108..442 630 36.9 Plus
Irk1-PD 532 CG44159-PD 18..360 108..442 630 36.9 Plus
Irk1-PE 540 CG44159-PE 26..368 108..442 630 36.9 Plus
Irk1-PB 555 CG44159-PB 41..383 108..442 630 36.9 Plus
Irk1-PG 652 CG44159-PG 138..480 108..442 630 36.9 Plus
Irk1-PF 652 CG44159-PF 138..480 108..442 630 36.9 Plus
Irk2-PB 437 CG4370-PB 64..404 95..432 579 33.9 Plus
Irk2-PC 451 CG4370-PC 64..404 95..432 579 33.9 Plus
Irk2-PA 453 CG4370-PA 92..420 107..432 570 34.2 Plus
Irk2-PD 454 CG4370-PD 92..420 107..432 570 34.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 13:18:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16851-PA 512 GI16851-PA 1..407 18..428 1796 79 Plus
Dmoj\GI22262-PA 556 GI22262-PA 41..380 108..439 636 37 Plus
Dmoj\GI10708-PA 532 GI10708-PA 159..499 95..432 594 33.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 13:18:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14708-PA 514 GL14708-PA 211..513 141..442 1447 85.8 Plus
Dper\GL24490-PA 549 GL24490-PA 41..383 108..442 657 38.2 Plus
Dper\GL13847-PA 453 GL13847-PA 92..420 107..432 576 33.9 Plus
Dper\GL14708-PA 514 GL14708-PA 1..140 8..144 554 74.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 13:18:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10279-PA 514 GA10279-PA 211..513 141..442 1437 85.1 Plus
Dpse\GA19830-PA 547 GA19830-PA 41..383 108..442 657 38.2 Plus
Dpse\GA19830-PD 532 GA19830-PD 26..368 108..442 655 38.2 Plus
Dpse\GA19830-PB 523 GA19830-PB 17..359 108..442 654 38.2 Plus
Dpse\GA18138-PB 440 GA18138-PB 67..407 95..432 587 33.6 Plus
Dpse\GA10279-PA 514 GA10279-PA 1..140 8..144 555 74.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 13:18:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17065-PA 442 GM17065-PA 1..442 1..442 2350 98 Plus
Dsec\GM26492-PA 549 GM26492-PA 41..383 108..442 650 37.3 Plus
Dsec\GM23564-PA 732 GM23564-PA 359..699 95..432 591 33.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 13:18:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21812-PA 442 GD21812-PA 1..442 1..442 2360 98.6 Plus
Dsim\GD21006-PA 549 GD21006-PA 41..383 108..442 651 37.3 Plus
Dsim\GD18380-PA 523 GD18380-PA 150..490 95..432 594 33.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 13:18:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17200-PA 443 GJ17200-PA 6..421 12..428 1817 79.2 Plus
Dvir\GJ24053-PA 550 GJ24053-PA 26..365 108..439 628 37 Plus
Dvir\GJ23123-PA 457 GJ23123-PA 77..424 86..432 582 33 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 13:18:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18176-PA 453 GK18176-PA 9..453 7..442 1816 75.7 Plus
Dwil\GK14058-PA 512 GK14058-PA 3..345 108..442 665 38.7 Plus
Dwil\GK12266-PA 521 GK12266-PA 12..354 108..442 649 38.2 Plus
Dwil\GK13155-PA 436 GK13155-PA 63..403 95..432 584 33.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 13:18:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12711-PA 439 GE12711-PA 1..439 1..442 2267 94.8 Plus
Dyak\GE10360-PA 553 GE10360-PA 41..383 108..442 651 37.3 Plus
Dyak\Irk2-PA 669 GE23953-PA 296..636 95..432 592 33.9 Plus