Clone IP03309 Report

Search the DGRC for IP03309

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:33
Well:9
Vector:pOT2
Associated Gene/TranscriptOrco-RA
Protein status:IP03309.pep: gold
Preliminary Size:1461
Sequenced Size:1760

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10609 2005-01-01 Successful iPCR screen
Or83b 2008-04-29 Picked prior to 5.5
Or83b 2008-04-29 Stopped prior to 5.5
CG10609 2011-03-01 Transcript Validation

Clone Sequence Records

IP03309.complete Sequence

1760 bp assembled on 2011-09-06

GenBank Submission: BT128877.1

> IP03309.complete
TTTTTATAATGTGATGACAACCTCGATGCAGCCGAGCAAGTACACGGGCC
TGGTCGCCGACCTGATGCCCAACATCCGGGCGATGAAGTACTCCGGCCTG
TTCATGCACAACTTCACGGGCGGCAGTGCCTTCATGAAGAAGGTGTACTC
CTCCGTGCACCTGGTGTTCCTCCTCATGCAGTTCACCTTCATCCTGGTCA
ACATGGCCCTGAACGCCGAGGAGGTCAACGAGCTGTCGGGCAACACGATC
ACGACCCTCTTCTTCACCCACTGCATCACGAAGTTTATCTACCTGGCTGT
TAACCAGAAGAATTTCTACAGAACATTGAATATATGGAACCAGGTGAACA
CGCATCCCTTGTTCGCCGAGTCGGATGCTCGTTACCATTCGATCGCACTG
GCGAAGATGAGGAAGCTGTTCTTTCTGGTGATGCTGACCACAGTCGCCTC
GGCCACCGCCTGGACCACGATCACCTTCTTTGGCGACAGCGTAAAAATGG
TGGTGGACCATGAGACGAACTCCAGCATCCCGGTGGAGATACCCCGGCTG
CCGATTAAGTCCTTCTACCCGTGGAACGCCAGCCACGGCATGTTCTACAT
GATCAGCTTTGCCTTTCAGATCTACTACGTGCTCTTCTCGATGATCCACT
CCAATCTATGCGACGTGATGTTCTGCTCTTGGCTGATATTCGCCTGCGAG
CAGCTGCAGCACTTGAAGGGCATCATGAAGCCGCTGATGGAGCTGTCCGC
CTCGCTGGACACCTACAGGCCCAACTCGGCGGCCCTCTTCAGGTCCCTGT
CGGCCAACTCCAAGTCGGAGCTAATTCATAATGAAGAAAAGGATCCCGGC
ACCGACATGGACATGTCGGGCATCTACAGCTCGAAAGCGGATTGGGGCGC
TCAGTTTCGAGCACCCTCGACACTGCAGTCCTTTGGCGGGAACGGGGGCG
GAGGCAACGGGTTGGTGAACGGCGCTAATCCCAACGGGCTGACCAAAAAG
CAGGAGATGATGGTGCGCAGTGCCATCAAGTACTGGGTCGAGCGGCACAA
GCACGTGGTGCGACTGGTGGCTGCCATCGGCGATACTTACGGAGCCGCCC
TCCTCCTCCACATGCTGACCTCGACCATCAAGCTGACCCTGCTGGCATAC
CAGGCCACCAAAATCAACGGAGTGAATGTCTACGCCTTCACAGTCGTCGG
ATACCTAGGATACGCGCTGGCCCAGGTGTTCCACTTTTGCATCTTTGGCA
ATCGTCTGATTGAAGAGAGTTCATCCGTCATGGAGGCCGCCTACTCGTGC
CACTGGTACGATGGCTCCGAGGAGGCCAAGACCTTCGTCCAGATCGTGTG
CCAGCAGTGCCAGAAGGCGATGAGCATATCGGGAGCGAAATTCTTCACCG
TCTCCCTGGATTTGTTTGCTTCGGTTCTGGGTGCCGTCGTCACCTACTTT
ATGGTGCTGGTGCAGCTCAAGTAAGTTGCTGCGAAGCTGATGGATTTTTG
TACCAGAAAAGCGAATGCCAAGAAGCCACCTACCGCCCCTTGCCCCCTCC
GCACTGTGCAACCAGCAATATCACAGAGCAATTATAACGCAAATTATATA
TTTTATACCTGCGACGAGCGAGCCTCGTGGGGCATAATGGAGACATTCTG
GGGCACATAGAAGCCTGCAAATACTTATCGATTTTGTACACGCGTAGAGC
TTTTAATGTAAACCCAAGATGCAAACTAAATAAATGTGTAGTGAAAAAAA
AAAAAAAAAA

IP03309.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 10:55:51
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 1234690..1235207 836..319 2590 100 Minus
chr3R 27901430 chr3R 1232842..1233162 1743..1423 1605 100 Minus
chr3R 27901430 chr3R 1235275..1235583 321..13 1545 100 Minus
chr3R 27901430 chr3R 1234367..1234594 1062..835 1140 100 Minus
chr3R 27901430 chr3R 1233747..1233952 1267..1062 1030 100 Minus
chr3R 27901430 chr3R 1233227..1233387 1426..1266 805 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 10:55:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5409031..5409548 836..319 2590 100 Minus
3R 32079331 3R 5407180..5407503 1746..1423 1620 100 Minus
3R 32079331 3R 5409616..5409924 321..13 1545 100 Minus
3R 32079331 3R 5408708..5408935 1062..835 1140 100 Minus
3R 32079331 3R 5408088..5408293 1267..1062 1030 100 Minus
3R 32079331 3R 5407568..5407728 1426..1266 805 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:01:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 5149862..5150379 836..319 2590 100 Minus
3R 31820162 3R 5148011..5148334 1746..1423 1620 100 Minus
3R 31820162 3R 5150447..5150755 321..13 1545 100 Minus
3R 31820162 3R 5149539..5149766 1062..835 1140 100 Minus
3R 31820162 3R 5148919..5149124 1267..1062 1030 100 Minus
3R 31820162 3R 5148399..5148559 1426..1266 805 100 Minus
Blast to na_te.dros performed 2019-03-15 10:55:49
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy10 6006 gypsy10 GYPSY10 6006bp 2432..2480 340..293 125 75.5 Minus

IP03309.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 10:56:57 Download gff for IP03309.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 1235275..1235583 13..321 100   Minus
chr3R 1232842..1233161 1424..1743 100 <- Minus
chr3R 1233230..1233385 1268..1423 100 <- Minus
chr3R 1233747..1233951 1063..1267 100 <- Minus
chr3R 1234367..1234592 837..1062 100 <- Minus
chr3R 1234690..1235204 322..836 100 <- Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-09-06 14:06:55 Download gff for IP03309.complete
Subject Subject Range Query Range Percent Splice Strand
Or83b-RB 1..1461 14..1474 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:29:12 Download gff for IP03309.complete
Subject Subject Range Query Range Percent Splice Strand
Orco-RA 1..1461 14..1474 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:15:38 Download gff for IP03309.complete
Subject Subject Range Query Range Percent Splice Strand
Orco-RA 1..1461 14..1474 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-06 14:06:55 Download gff for IP03309.complete
Subject Subject Range Query Range Percent Splice Strand
Or83b-RB 1..1743 1..1743 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:29:12 Download gff for IP03309.complete
Subject Subject Range Query Range Percent Splice Strand
Orco-RB 1..1743 1..1743 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:15:38 Download gff for IP03309.complete
Subject Subject Range Query Range Percent Splice Strand
Orco-RB 1..1743 1..1743 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:56:57 Download gff for IP03309.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5408708..5408933 837..1062 100 <- Minus
3R 5407571..5407726 1268..1423 100 <- Minus
3R 5408088..5408292 1063..1267 100 <- Minus
3R 5407183..5407502 1424..1743 100 <- Minus
3R 5409031..5409545 322..836 100 <- Minus
3R 5409616..5409924 13..321 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:56:57 Download gff for IP03309.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5408708..5408933 837..1062 100 <- Minus
3R 5407571..5407726 1268..1423 100 <- Minus
3R 5408088..5408292 1063..1267 100 <- Minus
3R 5407183..5407502 1424..1743 100 <- Minus
3R 5409031..5409545 322..836 100 <- Minus
3R 5409616..5409924 13..321 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:56:57 Download gff for IP03309.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5408708..5408933 837..1062 100 <- Minus
3R 5407571..5407726 1268..1423 100 <- Minus
3R 5408088..5408292 1063..1267 100 <- Minus
3R 5407183..5407502 1424..1743 100 <- Minus
3R 5409031..5409545 322..836 100 <- Minus
3R 5409616..5409924 13..321 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:29:12 Download gff for IP03309.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1232905..1233224 1424..1743 100 <- Minus
arm_3R 1233293..1233448 1268..1423 100 <- Minus
arm_3R 1233810..1234014 1063..1267 100 <- Minus
arm_3R 1234430..1234655 837..1062 100 <- Minus
arm_3R 1234753..1235267 322..836 100 <- Minus
arm_3R 1235338..1235646 13..321 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:47:57 Download gff for IP03309.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5148014..5148333 1424..1743 100 <- Minus
3R 5148402..5148557 1268..1423 100 <- Minus
3R 5148919..5149123 1063..1267 100 <- Minus
3R 5149539..5149764 837..1062 100 <- Minus
3R 5149862..5150376 322..836 100 <- Minus
3R 5150447..5150755 13..321 100 <- Minus

IP03309.pep Sequence

Translation from 1 to 1473

> IP03309.pep
FYNVMTTSMQPSKYTGLVADLMPNIRAMKYSGLFMHNFTGGSAFMKKVYS
SVHLVFLLMQFTFILVNMALNAEEVNELSGNTITTLFFTHCITKFIYLAV
NQKNFYRTLNIWNQVNTHPLFAESDARYHSIALAKMRKLFFLVMLTTVAS
ATAWTTITFFGDSVKMVVDHETNSSIPVEIPRLPIKSFYPWNASHGMFYM
ISFAFQIYYVLFSMIHSNLCDVMFCSWLIFACEQLQHLKGIMKPLMELSA
SLDTYRPNSAALFRSLSANSKSELIHNEEKDPGTDMDMSGIYSSKADWGA
QFRAPSTLQSFGGNGGGGNGLVNGANPNGLTKKQEMMVRSAIKYWVERHK
HVVRLVAAIGDTYGAALLLHMLTSTIKLTLLAYQATKINGVNVYAFTVVG
YLGYALAQVFHFCIFGNRLIEESSSVMEAAYSCHWYDGSEEAKTFVQIVC
QQCQKAMSISGAKFFTVSLDLFASVLGAVVTYFMVLVQLK*

IP03309.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 19:33:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17712-PA 482 GF17712-PA 1..482 5..490 2523 95.5 Plus
Dana\GF11984-PA 346 GF11984-PA 1..346 5..354 1734 94 Plus
Dana\GF16031-PA 204 GF16031-PA 1..204 5..208 1028 95.1 Plus
Dana\GF14599-PA 406 GF14599-PA 240..402 322..486 168 26.9 Plus
Dana\GF23834-PA 399 GF23834-PA 241..380 323..469 152 24.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 19:33:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11032-PA 486 GG11032-PA 1..486 5..490 2606 99.2 Plus
Dere\GG13978-PA 404 GG13978-PA 259..397 346..486 158 26.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 19:33:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22610-PA 481 GH22610-PA 1..481 5..490 2326 88.3 Plus
Dgri\GH10871-PA 395 GH10871-PA 245..391 338..486 156 25.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:22:58
Subject Length Description Subject Range Query Range Score Percent Strand
Orco-PB 486 CG10609-PB 1..486 5..490 2523 100 Plus
Orco-PA 486 CG10609-PA 1..486 5..490 2523 100 Plus
Or85f-PA 392 CG16755-PA 222..392 320..488 175 25 Plus
Or22c-PA 402 CG15377-PA 236..398 322..486 163 25.1 Plus
Or67c-PA 404 CG14156-PA 259..397 346..486 159 26.2 Plus
Or49a-PA 396 CG13158-PA 235..392 327..488 158 25.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 19:33:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23643-PA 485 GI23643-PA 1..485 5..490 2335 90.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 19:33:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22168-PA 484 GL22168-PA 1..484 9..490 2379 94.2 Plus
Dper\GL15322-PA 397 GL15322-PA 231..393 322..486 159 25.7 Plus
Dper\GL11094-PA 399 GL11094-PA 253..395 345..488 153 26.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 19:33:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\Orco-PA 484 GA10435-PA 1..484 9..490 2379 94.2 Plus
Dpse\Or22c-PA 397 GA13684-PA 231..393 322..486 159 25.7 Plus
Dpse\Or49a2-PA 399 GA24610-PA 253..395 345..488 157 27.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 19:33:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10637-PA 486 GM10637-PA 1..486 5..490 2367 94.9 Plus
Dsec\GM16851-PA 402 GM16851-PA 236..398 322..486 164 25.7 Plus
Dsec\GM21378-PA 396 GM21378-PA 228..392 320..488 160 25.4 Plus
Dsec\GM24814-PA 404 GM24814-PA 259..397 346..486 155 26.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 19:33:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19619-PA 239 GD19619-PA 93..239 344..490 724 94.6 Plus
Dsim\GD19619-PA 239 GD19619-PA 1..103 5..107 548 100 Plus
Dsim\GD23130-PA 402 GD23130-PA 236..398 322..486 163 25.7 Plus
Dsim\GD10874-PA 393 GD10874-PA 231..389 326..488 158 26.4 Plus
Dsim\GD12865-PA 404 GD12865-PA 259..397 346..486 157 26.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 19:33:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24719-PA 480 GJ24719-PA 1..480 9..490 2319 90.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 19:33:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22840-PA 483 GK22840-PA 1..483 9..490 2477 95.5 Plus
Dwil\GK15045-PA 400 GK15045-PA 250..396 338..486 157 26.5 Plus
Dwil\GK22463-PA 406 GK22463-PA 244..398 323..483 156 25.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 19:33:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25284-PA 486 GE25284-PA 1..486 5..490 2605 99.2 Plus
Dyak\GE20276-PA 404 GE20276-PA 259..397 346..486 157 26.6 Plus

IP03309.hyp Sequence

Translation from 13 to 1473

> IP03309.hyp
MTTSMQPSKYTGLVADLMPNIRAMKYSGLFMHNFTGGSAFMKKVYSSVHL
VFLLMQFTFILVNMALNAEEVNELSGNTITTLFFTHCITKFIYLAVNQKN
FYRTLNIWNQVNTHPLFAESDARYHSIALAKMRKLFFLVMLTTVASATAW
TTITFFGDSVKMVVDHETNSSIPVEIPRLPIKSFYPWNASHGMFYMISFA
FQIYYVLFSMIHSNLCDVMFCSWLIFACEQLQHLKGIMKPLMELSASLDT
YRPNSAALFRSLSANSKSELIHNEEKDPGTDMDMSGIYSSKADWGAQFRA
PSTLQSFGGNGGGGNGLVNGANPNGLTKKQEMMVRSAIKYWVERHKHVVR
LVAAIGDTYGAALLLHMLTSTIKLTLLAYQATKINGVNVYAFTVVGYLGY
ALAQVFHFCIFGNRLIEESSSVMEAAYSCHWYDGSEEAKTFVQIVCQQCQ
KAMSISGAKFFTVSLDLFASVLGAVVTYFMVLVQLK*

IP03309.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:20:01
Subject Length Description Subject Range Query Range Score Percent Strand
Orco-PB 486 CG10609-PB 1..486 1..486 2523 100 Plus
Orco-PA 486 CG10609-PA 1..486 1..486 2523 100 Plus
Or85f-PA 392 CG16755-PA 222..392 316..484 175 25 Plus
Or22c-PA 402 CG15377-PA 236..398 318..482 163 25.1 Plus
Or67c-PA 404 CG14156-PA 259..397 342..482 159 26.2 Plus