BDGP Sequence Production Resources |
Search the DGRC for IP03309
Library: | IP |
Tissue Source: | Pooled D melanogaster cDNA libraries |
Created by: | |
Date Registered: | 2004-07-08 |
Comments: | |
Original Plate Number: | 33 |
Well: | 9 |
Vector: | pOT2 |
Associated Gene/Transcript | Orco-RA |
Protein status: | IP03309.pep: gold |
Preliminary Size: | 1461 |
Sequenced Size: | 1760 |
Gene | Date | Evidence |
---|---|---|
CG10609 | 2005-01-01 | Successful iPCR screen |
Or83b | 2008-04-29 | Picked prior to 5.5 |
Or83b | 2008-04-29 | Stopped prior to 5.5 |
CG10609 | 2011-03-01 | Transcript Validation |
1760 bp assembled on 2011-09-06
GenBank Submission: BT128877.1
> IP03309.complete TTTTTATAATGTGATGACAACCTCGATGCAGCCGAGCAAGTACACGGGCC TGGTCGCCGACCTGATGCCCAACATCCGGGCGATGAAGTACTCCGGCCTG TTCATGCACAACTTCACGGGCGGCAGTGCCTTCATGAAGAAGGTGTACTC CTCCGTGCACCTGGTGTTCCTCCTCATGCAGTTCACCTTCATCCTGGTCA ACATGGCCCTGAACGCCGAGGAGGTCAACGAGCTGTCGGGCAACACGATC ACGACCCTCTTCTTCACCCACTGCATCACGAAGTTTATCTACCTGGCTGT TAACCAGAAGAATTTCTACAGAACATTGAATATATGGAACCAGGTGAACA CGCATCCCTTGTTCGCCGAGTCGGATGCTCGTTACCATTCGATCGCACTG GCGAAGATGAGGAAGCTGTTCTTTCTGGTGATGCTGACCACAGTCGCCTC GGCCACCGCCTGGACCACGATCACCTTCTTTGGCGACAGCGTAAAAATGG TGGTGGACCATGAGACGAACTCCAGCATCCCGGTGGAGATACCCCGGCTG CCGATTAAGTCCTTCTACCCGTGGAACGCCAGCCACGGCATGTTCTACAT GATCAGCTTTGCCTTTCAGATCTACTACGTGCTCTTCTCGATGATCCACT CCAATCTATGCGACGTGATGTTCTGCTCTTGGCTGATATTCGCCTGCGAG CAGCTGCAGCACTTGAAGGGCATCATGAAGCCGCTGATGGAGCTGTCCGC CTCGCTGGACACCTACAGGCCCAACTCGGCGGCCCTCTTCAGGTCCCTGT CGGCCAACTCCAAGTCGGAGCTAATTCATAATGAAGAAAAGGATCCCGGC ACCGACATGGACATGTCGGGCATCTACAGCTCGAAAGCGGATTGGGGCGC TCAGTTTCGAGCACCCTCGACACTGCAGTCCTTTGGCGGGAACGGGGGCG GAGGCAACGGGTTGGTGAACGGCGCTAATCCCAACGGGCTGACCAAAAAG CAGGAGATGATGGTGCGCAGTGCCATCAAGTACTGGGTCGAGCGGCACAA GCACGTGGTGCGACTGGTGGCTGCCATCGGCGATACTTACGGAGCCGCCC TCCTCCTCCACATGCTGACCTCGACCATCAAGCTGACCCTGCTGGCATAC CAGGCCACCAAAATCAACGGAGTGAATGTCTACGCCTTCACAGTCGTCGG ATACCTAGGATACGCGCTGGCCCAGGTGTTCCACTTTTGCATCTTTGGCA ATCGTCTGATTGAAGAGAGTTCATCCGTCATGGAGGCCGCCTACTCGTGC CACTGGTACGATGGCTCCGAGGAGGCCAAGACCTTCGTCCAGATCGTGTG CCAGCAGTGCCAGAAGGCGATGAGCATATCGGGAGCGAAATTCTTCACCG TCTCCCTGGATTTGTTTGCTTCGGTTCTGGGTGCCGTCGTCACCTACTTT ATGGTGCTGGTGCAGCTCAAGTAAGTTGCTGCGAAGCTGATGGATTTTTG TACCAGAAAAGCGAATGCCAAGAAGCCACCTACCGCCCCTTGCCCCCTCC GCACTGTGCAACCAGCAATATCACAGAGCAATTATAACGCAAATTATATA TTTTATACCTGCGACGAGCGAGCCTCGTGGGGCATAATGGAGACATTCTG GGGCACATAGAAGCCTGCAAATACTTATCGATTTTGTACACGCGTAGAGC TTTTAATGTAAACCCAAGATGCAAACTAAATAAATGTGTAGTGAAAAAAA AAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 1234690..1235207 | 836..319 | 2590 | 100 | Minus |
chr3R | 27901430 | chr3R | 1232842..1233162 | 1743..1423 | 1605 | 100 | Minus |
chr3R | 27901430 | chr3R | 1235275..1235583 | 321..13 | 1545 | 100 | Minus |
chr3R | 27901430 | chr3R | 1234367..1234594 | 1062..835 | 1140 | 100 | Minus |
chr3R | 27901430 | chr3R | 1233747..1233952 | 1267..1062 | 1030 | 100 | Minus |
chr3R | 27901430 | chr3R | 1233227..1233387 | 1426..1266 | 805 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 5409031..5409548 | 836..319 | 2590 | 100 | Minus |
3R | 32079331 | 3R | 5407180..5407503 | 1746..1423 | 1620 | 100 | Minus |
3R | 32079331 | 3R | 5409616..5409924 | 321..13 | 1545 | 100 | Minus |
3R | 32079331 | 3R | 5408708..5408935 | 1062..835 | 1140 | 100 | Minus |
3R | 32079331 | 3R | 5408088..5408293 | 1267..1062 | 1030 | 100 | Minus |
3R | 32079331 | 3R | 5407568..5407728 | 1426..1266 | 805 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 5149862..5150379 | 836..319 | 2590 | 100 | Minus |
3R | 31820162 | 3R | 5148011..5148334 | 1746..1423 | 1620 | 100 | Minus |
3R | 31820162 | 3R | 5150447..5150755 | 321..13 | 1545 | 100 | Minus |
3R | 31820162 | 3R | 5149539..5149766 | 1062..835 | 1140 | 100 | Minus |
3R | 31820162 | 3R | 5148919..5149124 | 1267..1062 | 1030 | 100 | Minus |
3R | 31820162 | 3R | 5148399..5148559 | 1426..1266 | 805 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
gypsy10 | 6006 | gypsy10 GYPSY10 6006bp | 2432..2480 | 340..293 | 125 | 75.5 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 1235275..1235583 | 13..321 | 100 | Minus | |
chr3R | 1232842..1233161 | 1424..1743 | 100 | <- | Minus |
chr3R | 1233230..1233385 | 1268..1423 | 100 | <- | Minus |
chr3R | 1233747..1233951 | 1063..1267 | 100 | <- | Minus |
chr3R | 1234367..1234592 | 837..1062 | 100 | <- | Minus |
chr3R | 1234690..1235204 | 322..836 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Or83b-RB | 1..1461 | 14..1474 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Orco-RA | 1..1461 | 14..1474 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Orco-RA | 1..1461 | 14..1474 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Or83b-RB | 1..1743 | 1..1743 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Orco-RB | 1..1743 | 1..1743 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Orco-RB | 1..1743 | 1..1743 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5408708..5408933 | 837..1062 | 100 | <- | Minus |
3R | 5407571..5407726 | 1268..1423 | 100 | <- | Minus |
3R | 5408088..5408292 | 1063..1267 | 100 | <- | Minus |
3R | 5407183..5407502 | 1424..1743 | 100 | <- | Minus |
3R | 5409031..5409545 | 322..836 | 100 | <- | Minus |
3R | 5409616..5409924 | 13..321 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5408708..5408933 | 837..1062 | 100 | <- | Minus |
3R | 5407571..5407726 | 1268..1423 | 100 | <- | Minus |
3R | 5408088..5408292 | 1063..1267 | 100 | <- | Minus |
3R | 5407183..5407502 | 1424..1743 | 100 | <- | Minus |
3R | 5409031..5409545 | 322..836 | 100 | <- | Minus |
3R | 5409616..5409924 | 13..321 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5408708..5408933 | 837..1062 | 100 | <- | Minus |
3R | 5407571..5407726 | 1268..1423 | 100 | <- | Minus |
3R | 5408088..5408292 | 1063..1267 | 100 | <- | Minus |
3R | 5407183..5407502 | 1424..1743 | 100 | <- | Minus |
3R | 5409031..5409545 | 322..836 | 100 | <- | Minus |
3R | 5409616..5409924 | 13..321 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 1232905..1233224 | 1424..1743 | 100 | <- | Minus |
arm_3R | 1233293..1233448 | 1268..1423 | 100 | <- | Minus |
arm_3R | 1233810..1234014 | 1063..1267 | 100 | <- | Minus |
arm_3R | 1234430..1234655 | 837..1062 | 100 | <- | Minus |
arm_3R | 1234753..1235267 | 322..836 | 100 | <- | Minus |
arm_3R | 1235338..1235646 | 13..321 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5148014..5148333 | 1424..1743 | 100 | <- | Minus |
3R | 5148402..5148557 | 1268..1423 | 100 | <- | Minus |
3R | 5148919..5149123 | 1063..1267 | 100 | <- | Minus |
3R | 5149539..5149764 | 837..1062 | 100 | <- | Minus |
3R | 5149862..5150376 | 322..836 | 100 | <- | Minus |
3R | 5150447..5150755 | 13..321 | 100 | <- | Minus |
Translation from 1 to 1473
> IP03309.pep FYNVMTTSMQPSKYTGLVADLMPNIRAMKYSGLFMHNFTGGSAFMKKVYS SVHLVFLLMQFTFILVNMALNAEEVNELSGNTITTLFFTHCITKFIYLAV NQKNFYRTLNIWNQVNTHPLFAESDARYHSIALAKMRKLFFLVMLTTVAS ATAWTTITFFGDSVKMVVDHETNSSIPVEIPRLPIKSFYPWNASHGMFYM ISFAFQIYYVLFSMIHSNLCDVMFCSWLIFACEQLQHLKGIMKPLMELSA SLDTYRPNSAALFRSLSANSKSELIHNEEKDPGTDMDMSGIYSSKADWGA QFRAPSTLQSFGGNGGGGNGLVNGANPNGLTKKQEMMVRSAIKYWVERHK HVVRLVAAIGDTYGAALLLHMLTSTIKLTLLAYQATKINGVNVYAFTVVG YLGYALAQVFHFCIFGNRLIEESSSVMEAAYSCHWYDGSEEAKTFVQIVC QQCQKAMSISGAKFFTVSLDLFASVLGAVVTYFMVLVQLK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17712-PA | 482 | GF17712-PA | 1..482 | 5..490 | 2523 | 95.5 | Plus |
Dana\GF11984-PA | 346 | GF11984-PA | 1..346 | 5..354 | 1734 | 94 | Plus |
Dana\GF16031-PA | 204 | GF16031-PA | 1..204 | 5..208 | 1028 | 95.1 | Plus |
Dana\GF14599-PA | 406 | GF14599-PA | 240..402 | 322..486 | 168 | 26.9 | Plus |
Dana\GF23834-PA | 399 | GF23834-PA | 241..380 | 323..469 | 152 | 24.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11032-PA | 486 | GG11032-PA | 1..486 | 5..490 | 2606 | 99.2 | Plus |
Dere\GG13978-PA | 404 | GG13978-PA | 259..397 | 346..486 | 158 | 26.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH22610-PA | 481 | GH22610-PA | 1..481 | 5..490 | 2326 | 88.3 | Plus |
Dgri\GH10871-PA | 395 | GH10871-PA | 245..391 | 338..486 | 156 | 25.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Orco-PB | 486 | CG10609-PB | 1..486 | 5..490 | 2523 | 100 | Plus |
Orco-PA | 486 | CG10609-PA | 1..486 | 5..490 | 2523 | 100 | Plus |
Or85f-PA | 392 | CG16755-PA | 222..392 | 320..488 | 175 | 25 | Plus |
Or22c-PA | 402 | CG15377-PA | 236..398 | 322..486 | 163 | 25.1 | Plus |
Or67c-PA | 404 | CG14156-PA | 259..397 | 346..486 | 159 | 26.2 | Plus |
Or49a-PA | 396 | CG13158-PA | 235..392 | 327..488 | 158 | 25.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23643-PA | 485 | GI23643-PA | 1..485 | 5..490 | 2335 | 90.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22168-PA | 484 | GL22168-PA | 1..484 | 9..490 | 2379 | 94.2 | Plus |
Dper\GL15322-PA | 397 | GL15322-PA | 231..393 | 322..486 | 159 | 25.7 | Plus |
Dper\GL11094-PA | 399 | GL11094-PA | 253..395 | 345..488 | 153 | 26.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\Orco-PA | 484 | GA10435-PA | 1..484 | 9..490 | 2379 | 94.2 | Plus |
Dpse\Or22c-PA | 397 | GA13684-PA | 231..393 | 322..486 | 159 | 25.7 | Plus |
Dpse\Or49a2-PA | 399 | GA24610-PA | 253..395 | 345..488 | 157 | 27.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM10637-PA | 486 | GM10637-PA | 1..486 | 5..490 | 2367 | 94.9 | Plus |
Dsec\GM16851-PA | 402 | GM16851-PA | 236..398 | 322..486 | 164 | 25.7 | Plus |
Dsec\GM21378-PA | 396 | GM21378-PA | 228..392 | 320..488 | 160 | 25.4 | Plus |
Dsec\GM24814-PA | 404 | GM24814-PA | 259..397 | 346..486 | 155 | 26.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD19619-PA | 239 | GD19619-PA | 93..239 | 344..490 | 724 | 94.6 | Plus |
Dsim\GD19619-PA | 239 | GD19619-PA | 1..103 | 5..107 | 548 | 100 | Plus |
Dsim\GD23130-PA | 402 | GD23130-PA | 236..398 | 322..486 | 163 | 25.7 | Plus |
Dsim\GD10874-PA | 393 | GD10874-PA | 231..389 | 326..488 | 158 | 26.4 | Plus |
Dsim\GD12865-PA | 404 | GD12865-PA | 259..397 | 346..486 | 157 | 26.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ24719-PA | 480 | GJ24719-PA | 1..480 | 9..490 | 2319 | 90.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22840-PA | 483 | GK22840-PA | 1..483 | 9..490 | 2477 | 95.5 | Plus |
Dwil\GK15045-PA | 400 | GK15045-PA | 250..396 | 338..486 | 157 | 26.5 | Plus |
Dwil\GK22463-PA | 406 | GK22463-PA | 244..398 | 323..483 | 156 | 25.9 | Plus |
Translation from 13 to 1473
> IP03309.hyp MTTSMQPSKYTGLVADLMPNIRAMKYSGLFMHNFTGGSAFMKKVYSSVHL VFLLMQFTFILVNMALNAEEVNELSGNTITTLFFTHCITKFIYLAVNQKN FYRTLNIWNQVNTHPLFAESDARYHSIALAKMRKLFFLVMLTTVASATAW TTITFFGDSVKMVVDHETNSSIPVEIPRLPIKSFYPWNASHGMFYMISFA FQIYYVLFSMIHSNLCDVMFCSWLIFACEQLQHLKGIMKPLMELSASLDT YRPNSAALFRSLSANSKSELIHNEEKDPGTDMDMSGIYSSKADWGAQFRA PSTLQSFGGNGGGGNGLVNGANPNGLTKKQEMMVRSAIKYWVERHKHVVR LVAAIGDTYGAALLLHMLTSTIKLTLLAYQATKINGVNVYAFTVVGYLGY ALAQVFHFCIFGNRLIEESSSVMEAAYSCHWYDGSEEAKTFVQIVCQQCQ KAMSISGAKFFTVSLDLFASVLGAVVTYFMVLVQLK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Orco-PB | 486 | CG10609-PB | 1..486 | 1..486 | 2523 | 100 | Plus |
Orco-PA | 486 | CG10609-PA | 1..486 | 1..486 | 2523 | 100 | Plus |
Or85f-PA | 392 | CG16755-PA | 222..392 | 316..484 | 175 | 25 | Plus |
Or22c-PA | 402 | CG15377-PA | 236..398 | 318..482 | 163 | 25.1 | Plus |
Or67c-PA | 404 | CG14156-PA | 259..397 | 342..482 | 159 | 26.2 | Plus |