Clone IP03318 Report

Search the DGRC for IP03318

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:33
Well:18
Vector:pOT2
Associated Gene/TranscriptmGluR-RC
Protein status:IP03318.pep: gold
Preliminary Size:3322
Sequenced Size:3026

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
mGluRA 2008-04-29 Picked prior to 5.5
CG11144 2011-03-01 Transcript Validation

Clone Sequence Records

IP03318.complete Sequence

3026 bp assembled on 2009-07-02

GenBank Submission: BT088899.1

> IP03318.complete
AAGACGTGCGCGTATTAGTTAAATATAAAAAAGGTTTTAAGAAATGTTGC
GATAAAGTTGTATAAGAATTTAAATAAGAAAAAAGACAAGCATCAACCAA
GGACATGCAAAAACATGAACCTGAATTTCACGTTGCGGGCCTAATACATT
GTTAACTTAAATCATCCACGTGTCTTTAAAAAGATGAAACAGAAAAATAA
TAACGGAACAATTTTAGTCGTCGTGATGGTTTTATCCTGGAGTCGAGTAG
TAGACTTAAAAAGTCCTAGTAACACACATACTCAGGATTCAGTGTCTGTT
TCTCTGCCTGGCGACATTATACTTGGTGGGCTATTTCCGGTCCATGAAAA
AGGTGAAGGTGCCCCTTGCGGACCAAAAGTATATAATAGGGGAGTTCAAC
GCCTGGAAGCAATGCTGTATGCTATAGATCGTGTAAACAATGACCCCAAC
ATACTTCCTGGAATTACGATAGGAGTCCATATACTTGACACCTGTTCAAG
AGACACATATGCCCTCAATCAGTCGCTTCAATTTGTCAGAGCATCCCTAA
ACAATTTAGACACATCAGGATATGAGTGTGCAGATGGGTCAAGCCCGCAA
CTAAGAAAAAATGCTTCGTCAGGCCCAGTTTTTGGAGTTATTGGCGGGTC
CTACAGTTCAGTGTCCTTGCAAGTGGCCAATTTGCTGCGTCTGTTTCATA
TTCCTCAAGTATCACCGGCCTCAACCGCTAAAACGCTTTCGGACAAAACA
CGCTTTGATCTGTTTGCTCGAACAGTACCTCCAGACACTTTCCAATCCGT
AGCCCTCGTGGACATACTAAAAAACTTTAACTGGTCATACGTATCAACGA
TACATTCGGAAGGATCTTATGGTGAATATGGGATTGAAGCATTACACAAG
GAAGCTACCGAACGAAATGTTTGCATAGCGGTAGCCGAGAAAGTACCCAG
TGCCGCAGACGACAAAGTTTTCGATTCCATTATAAGCAAGCTTCAAAAGA
AGCCTAACGCTCGCGGCGTTGTTCTTTTTACGAGAGCTGAAGATGCGCGT
CGAATTTTACAAGCAGCTAAACGAGCTAACTTATCGCAACCATTTCATTG
GATAGCAAGTGATGGTTGGGGGAAACAACAAAAACTACTCGAAGGCTTAG
AGGACATCGCTGAGGGTGCAATAACTGTAGAACTGCAGTCAGAGATAATC
GCAGATTTTGATCGCTACATGATGCAACTGACGCCAGAGACAAATCAAAG
GAATCCTTGGTTTGCTGAATACTGGGAAGATACATTCAACTGTGTTTTGA
CATCTCTTTCGGTAAAACCTGATACTTCAAACTCGGCTAATTCTACTGAC
AATAAAATCGGCGTCAAAGCAAAAACAGAATGCGACGATAGTTACCGGTT
ATCTGAAAAAGTTGGATACGAACAGGAGTCAAAGACACAATTTGTTGTGG
ATGCCGTCTACGCATTTGCCTATGCACTTCATAATTTGCATAATGATCGT
TGCAACACACAAAGCGACCAAACGACTGAGACAAGGAAGCACCTACAAAG
CGAATCTGTGTGGTATCGAAAAATTTCGACTGATACTAAGTCCCAAGCGT
GTCCTGACATGGCTAATTATGACGGAAAGGAGTTTTACAACAATTACCTT
TTGAACGTATCATTCATAGATCTTGCTGGCAGCGAAGTTAAATTCGATCG
ACAAGGCGATGGTTTGGCCAGATACGACATTTTGAATTATCAACGGCAAG
AAAACTCTTCAGGATATCAGTATAAGGTACCATAAATCACACACAAATAT
GTATGCAAAAATTATAAAAATAATGGTATGAGATTTCCAAGTATATAAAT
TTCTTTATTTGGTTATTACACGGACACAACTACTCTTAGGGATGGATGGC
GCAGTGACATTGAAACAGACAACTTTCCTATGTAAATTTTATTTATCTAC
TGGAAAAAAACATATTAAACAATTAACCGATTTGTCTACATATGAGAATT
CCAAACAATGACAGTTGTGTACTATTTTGTACATATATTGTAAATGAATT
TTCAATATCGTATTTATTTAAAAAATTTGCTATCACAAAGATATATAGCC
AAACTAATTTTCAGGTTATTGGAAAATGGTTTAATGGTTTGCAACTAAAC
TCAGAAACAGTTGTATGGAACAAGGAAACCGAACAACCTACTTCGGCCTG
TTCACTACCATGTGAGGTCGGAATGATCAAGAAACAACAGGGGGATACCT
GTTGCTGGATATGCGACAGCTGTGAATCTTTTGAATACGTATATGATGAG
TTTACGTGTAAAGACTGCGGTCCTGGACTTTGGCCCTATGCTGACAAGCT
CTCCTGCTATGCTTTAGACATCCAGTATATGAAATGGAACTCGTTGTTTG
CCCTTATTCCGATGGCAATTGCAATTTTTGGTATTGCACTGACCAGTATT
GTAATAGTTTTATTTGCAAAAAATCATGACACTCCATTGGTAAGAGCATC
AGGACGAGAGCTAAGTTATACTCTTCTTTTTGGTATACTGGTTTGTTATT
GTAATACTTTTGCACTGATAGCTAAGCCAACAATTGGCTCCTGTGTTCTA
CAAAGGTTTGGTATTGGGGTTGGCTTTTCCATTATATACAGTGCCTTGCT
AACAAAAACAAATCGAATTTCACGAATCTTTCACTCTGCTTCTAAGTCAG
CACAGCGCCTTAAGTATATTAGTCCACAATCACAAGTGGTGATAACTACC
TCTCTGATCGGTAAAATATTAACTATTTTTAAATGTCCTTATTTAATATT
CAATCCTTTCAGCAATACAGGTGCTAATCACAATGATTTGGATGGTAGTT
GAACCACCAGGAACTCGATTCTATTACCCAGACCGAAGGGAGGTGATTCT
TAAATGCAAAATACAAGACATGTCCTTTCTCTTTTCTCAGCTTTATAATA
TGATTCTCATAACCATTTGCACTATTTATGCAATTAAAACGAGAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAA

IP03318.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:33:06
Subject Length Description Subject Range Query Range Score Percent Strand
mGluRA-RA 3322 mGluRA-RA 4..1781 1..1778 8890 100 Plus
mGluRA-RA 3322 mGluRA-RA 1778..2425 2113..2760 3240 100 Plus
mGluRA-RA 3322 mGluRA-RA 2425..2611 2812..2998 935 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:05:37
Subject Length Description Subject Range Query Range Score Percent Strand
chr4 1351717 chr4 958847..959638 84..875 3915 99.6 Plus
chr4 1351717 chr4 964249..965003 2239..2993 3775 100 Plus
chr4 1351717 chr4 963616..964191 1666..2241 2850 99.7 Plus
chr4 1351717 chr4 960690..961234 871..1415 2680 99.4 Plus
chr4 1351717 chr4 963283..963537 1415..1669 1275 100 Plus
chr3LHet 2555433 chr3LHet 2277591..2277892 570..875 1100 92.2 Plus
chr4 1351717 chr4 957362..957446 1..85 425 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:37:31 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:05:35
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 938330..939121 84..875 3960 100 Plus
4 1348131 4 943732..944491 2239..2998 3800 100 Plus
4 1348131 4 943099..943674 1666..2241 2880 100 Plus
4 1348131 4 940173..940717 871..1415 2725 100 Plus
4 1348131 4 942766..943020 1415..1669 1275 100 Plus
3L 28110227 3L 27170264..27170565 570..875 1100 92.2 Plus
4 1348131 4 936845..936929 1..85 425 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:49:23
Subject Length Description Subject Range Query Range Score Percent Strand
4 1331231 4 938330..939121 84..875 3960 100 Plus
4 1331231 4 943732..944491 2239..2998 3800 100 Plus
4 1331231 4 943099..943674 1666..2241 2880 100 Plus
4 1331231 4 940173..940717 871..1415 2725 100 Plus
4 1331231 4 942766..943020 1415..1669 1275 100 Plus
3L 28103327 3L 27163364..27163665 570..875 1120 92.1 Plus
4 1331231 4 936845..936929 1..85 425 100 Plus
Blast to na_te.dros performed 2019-03-15 21:05:36
Subject Length Description Subject Range Query Range Score Percent Strand
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 6893..7024 1944..1808 160 60.9 Minus

IP03318.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:06:49 Download gff for IP03318.complete
Subject Subject Range Query Range Percent Splice Strand
chr4 957362..957446 1..85 100 -> Plus
chr4 958849..959634 86..871 99 -> Plus
chr4 960691..961234 872..1415 99 -> Plus
chr4 963284..963537 1416..1669 100 -> Plus
chr4 963620..964190 1670..2240 99 -> Plus
chr4 964251..965003 2241..2993 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:11:25 Download gff for IP03318.complete
Subject Subject Range Query Range Percent Splice Strand
mGluRA-RA 1..1598 184..1783 99 == Plus
mGluRA-RA 1599..2242 2120..2764 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:49:35 Download gff for IP03318.complete
Subject Subject Range Query Range Percent Splice Strand
mGluRA-RA 1..1598 184..1783 99 == Plus
mGluRA-RA 1599..2242 2120..2764 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:37:15 Download gff for IP03318.complete
Subject Subject Range Query Range Percent Splice Strand
mGluRA-RC 1..1602 184..1785 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:43:11 Download gff for IP03318.complete
Subject Subject Range Query Range Percent Splice Strand
mGluR-RC 1..1602 184..1785 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-02 11:25:19 Download gff for IP03318.complete
Subject Subject Range Query Range Percent Splice Strand
mGluRA-RA 4..1784 1..1783 99 == Plus
mGluRA-RA 1785..2428 2120..2764 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:49:35 Download gff for IP03318.complete
Subject Subject Range Query Range Percent Splice Strand
mGluRA-RA 4..1784 1..1783 99 == Plus
mGluRA-RA 1785..2428 2120..2764 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:37:15 Download gff for IP03318.complete
Subject Subject Range Query Range Percent Splice Strand
mGluRA-RC 27..3019 1..2993 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:43:11 Download gff for IP03318.complete
Subject Subject Range Query Range Percent Splice Strand
mGluR-RC 27..3019 1..2993 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:06:49 Download gff for IP03318.complete
Subject Subject Range Query Range Percent Splice Strand
4 936845..936929 1..85 100 -> Plus
4 938332..939117 86..871 100 -> Plus
4 940174..940717 872..1415 100 -> Plus
4 942767..943020 1416..1669 100 -> Plus
4 943103..943673 1670..2240 100 -> Plus
4 943734..944486 2241..2993 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:06:49 Download gff for IP03318.complete
Subject Subject Range Query Range Percent Splice Strand
4 936845..936929 1..85 100 -> Plus
4 938332..939117 86..871 100 -> Plus
4 940174..940717 872..1415 100 -> Plus
4 942767..943020 1416..1669 100 -> Plus
4 943103..943673 1670..2240 100 -> Plus
4 943734..944486 2241..2993 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:06:49 Download gff for IP03318.complete
Subject Subject Range Query Range Percent Splice Strand
4 936845..936929 1..85 100 -> Plus
4 938332..939117 86..871 100 -> Plus
4 940174..940717 872..1415 100 -> Plus
4 942767..943020 1416..1669 100 -> Plus
4 943103..943673 1670..2240 100 -> Plus
4 943734..944486 2241..2993 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:37:15 Download gff for IP03318.complete
Subject Subject Range Query Range Percent Splice Strand
arm_4 957471..957555 1..85 100 -> Plus
arm_4 958958..959743 86..871 100 -> Plus
arm_4 960800..961343 872..1415 100 -> Plus
arm_4 963393..963646 1416..1669 100 -> Plus
arm_4 963729..964299 1670..2240 100 -> Plus
arm_4 964360..965112 2241..2993 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:25:22 Download gff for IP03318.complete
Subject Subject Range Query Range Percent Splice Strand
4 938332..939117 86..871 100 -> Plus
4 940174..940717 872..1415 100 -> Plus
4 942767..943020 1416..1669 100 -> Plus
4 943103..943673 1670..2240 100 -> Plus
4 943734..944486 2241..2993 100   Plus
4 936845..936929 1..85 100 -> Plus

IP03318.pep Sequence

Translation from 183 to 1784

> IP03318.pep
MKQKNNNGTILVVVMVLSWSRVVDLKSPSNTHTQDSVSVSLPGDIILGGL
FPVHEKGEGAPCGPKVYNRGVQRLEAMLYAIDRVNNDPNILPGITIGVHI
LDTCSRDTYALNQSLQFVRASLNNLDTSGYECADGSSPQLRKNASSGPVF
GVIGGSYSSVSLQVANLLRLFHIPQVSPASTAKTLSDKTRFDLFARTVPP
DTFQSVALVDILKNFNWSYVSTIHSEGSYGEYGIEALHKEATERNVCIAV
AEKVPSAADDKVFDSIISKLQKKPNARGVVLFTRAEDARRILQAAKRANL
SQPFHWIASDGWGKQQKLLEGLEDIAEGAITVELQSEIIADFDRYMMQLT
PETNQRNPWFAEYWEDTFNCVLTSLSVKPDTSNSANSTDNKIGVKAKTEC
DDSYRLSEKVGYEQESKTQFVVDAVYAFAYALHNLHNDRCNTQSDQTTET
RKHLQSESVWYRKISTDTKSQACPDMANYDGKEFYNNYLLNVSFIDLAGS
EVKFDRQGDGLARYDILNYQRQENSSGYQYKVP*

IP03318.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 17:13:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19012-PA 542 GF19012-PA 9..528 10..532 2331 82.8 Plus
Dana\GF12584-PA 1293 GF12584-PA 235..677 43..532 900 38.5 Plus
Dana\GF12583-PA 112 GF12583-PA 14..110 27..120 216 42.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 17:13:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16401-PA 975 GG16401-PA 1..532 1..532 2686 93.8 Plus
Dere\GG10638-PA 1259 GG10638-PA 228..670 43..532 897 38.3 Plus
Dere\GG10637-PA 328 GG10637-PA 236..313 41..119 212 46.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 17:13:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23961-PA 1005 GH23961-PA 20..542 11..532 2298 82.7 Plus
Dgri\GH20808-PA 1297 GH20808-PA 314..745 43..521 893 38.6 Plus
Dgri\GH20807-PA 127 GH20807-PA 35..114 41..121 202 44.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:42:49
Subject Length Description Subject Range Query Range Score Percent Strand
mGluR-PC 533 CG11144-PC 1..533 1..533 2774 100 Plus
mGluR-PB 976 CG11144-PB 1..532 1..532 2767 100 Plus
mGluR-PA 976 CG11144-PA 1..532 1..532 2767 100 Plus
mGluR-PD 308 CG11144-PD 1..229 1..229 1180 100 Plus
mtt-PE 1095 CG30361-PE 71..515 41..532 876 38.2 Plus
mtt-PF 1248 CG30361-PF 226..668 43..532 875 38.3 Plus
mtt-PD 1415 CG30361-PD 393..835 43..532 875 38.3 Plus
mtt-PG 1472 CG30361-PG 393..835 43..532 875 38.3 Plus
mtt-PC 780 CG30361-PC 1..200 292..532 313 32 Plus
mtt-PD 1415 CG30361-PD 71..151 41..122 215 46.3 Plus
mtt-PG 1472 CG30361-PG 71..151 41..122 215 46.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 17:13:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14041-PA 999 GI14041-PA 2..503 3..532 2204 79.2 Plus
Dmoj\GI20896-PA 1309 GI20896-PA 302..733 43..521 888 38.6 Plus
Dmoj\GI20895-PA 426 GI20895-PA 343..420 41..119 216 46.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 17:13:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17542-PA 950 GL17542-PA 18..498 11..532 2203 80.6 Plus
Dper\GL10858-PA 1278 GL10858-PA 252..696 41..532 879 37.4 Plus
Dper\GL10857-PA 512 GL10857-PA 433..510 41..119 215 46.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 17:13:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22410-PA 839 GA22410-PA 18..350 11..343 1625 91.3 Plus
Dpse\GA24510-PA 1279 GA24510-PA 253..697 41..532 880 37.4 Plus
Dpse\GA24509-PA 116 GA24509-PA 37..115 41..120 213 46.2 Plus
Dpse\GA22410-PA 839 GA22410-PA 349..387 494..532 184 89.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:13:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26815-PA 410 GM26815-PA 1..410 1..411 2147 97.8 Plus
Dsec\GM20683-PA 1292 GM20683-PA 226..668 43..532 894 38.1 Plus
Dsec\GM13020-PA 570 GM13020-PA 6..126 412..532 640 95.9 Plus
Dsec\GM20682-PA 433 GM20682-PA 345..422 41..119 215 46.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:13:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15273-PA 679 GD15273-PA 1..200 292..532 319 32 Plus
Dsim\GD10166-PA 363 GD10166-PA 226..313 43..131 219 43.8 Plus
Dsim\GD10162-PA 105 GD10162-PA 2..68 53..120 172 42.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 17:13:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13080-PA 989 GJ13080-PA 15..533 9..532 2304 82.9 Plus
Dvir\GJ20628-PA 1346 GJ20628-PA 294..725 43..521 886 38.6 Plus
Dvir\GJ20627-PA 461 GJ20627-PA 362..439 41..119 209 45.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 17:14:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13663-PA 1160 GK13663-PA 177..697 8..532 2308 82.7 Plus
Dwil\GK21809-PA 1024 GK21809-PA 39..457 41..523 831 37.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 17:14:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14562-PA 976 GE14562-PA 1..532 1..532 2680 93.4 Plus
Dyak\GE22975-PA 1306 GE22975-PA 241..683 43..532 896 38.3 Plus
Dyak\GE22966-PA 334 GE22966-PA 256..333 41..119 213 46.8 Plus

IP03318.hyp Sequence

Translation from 183 to 1784

> IP03318.hyp
MKQKNNNGTILVVVMVLSWSRVVDLKSPSNTHTQDSVSVSLPGDIILGGL
FPVHEKGEGAPCGPKVYNRGVQRLEAMLYAIDRVNNDPNILPGITIGVHI
LDTCSRDTYALNQSLQFVRASLNNLDTSGYECADGSSPQLRKNASSGPVF
GVIGGSYSSVSLQVANLLRLFHIPQVSPASTAKTLSDKTRFDLFARTVPP
DTFQSVALVDILKNFNWSYVSTIHSEGSYGEYGIEALHKEATERNVCIAV
AEKVPSAADDKVFDSIISKLQKKPNARGVVLFTRAEDARRILQAAKRANL
SQPFHWIASDGWGKQQKLLEGLEDIAEGAITVELQSEIIADFDRYMMQLT
PETNQRNPWFAEYWEDTFNCVLTSLSVKPDTSNSANSTDNKIGVKAKTEC
DDSYRLSEKVGYEQESKTQFVVDAVYAFAYALHNLHNDRCNTQSDQTTET
RKHLQSESVWYRKISTDTKSQACPDMANYDGKEFYNNYLLNVSFIDLAGS
EVKFDRQGDGLARYDILNYQRQENSSGYQYKVP*

IP03318.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:00:57
Subject Length Description Subject Range Query Range Score Percent Strand
mGluR-PC 533 CG11144-PC 1..533 1..533 2774 100 Plus
mGluR-PB 976 CG11144-PB 1..532 1..532 2767 100 Plus
mGluR-PA 976 CG11144-PA 1..532 1..532 2767 100 Plus
mGluR-PD 308 CG11144-PD 1..229 1..229 1180 100 Plus
mtt-PE 1095 CG30361-PE 71..515 41..532 876 38.2 Plus