Clone IP03356 Report

Search the DGRC for IP03356

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:33
Well:56
Vector:pOT2
Associated Gene/TranscriptGr28b-RB
Protein status:IP03356.pep: gold
Preliminary Size:3684
Sequenced Size:1678

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
Gr28b 2008-04-29 Release 5.5 accounting
Gr28b 2008-08-15 Release 5.9 accounting
Gr28b 2008-12-18 5.12 accounting

Clone Sequence Records

IP03356.complete Sequence

1678 bp (1678 high quality bases) assembled on 2006-09-22

GenBank Submission: BT029037

> IP03356.complete
AACGGTTGTGCGATTCGCCGTGCTCTGTTTTCATTTCCGCTTCCGGTGTG
CATTAGTTCGATTTCGCCACTATGTCCGCCCTGCGTCGGGTGCGCAAATA
CTTTATATCCTCTCAGGTCTACGAGGCACTGCGTCCACTATTCTTCCTAA
CGTTTCTATACGGACTAACGCCATTTCATGTGGTCAGACGAAAGATGGGG
GAATCCTACTTGAAGATGTCCTGTTTCGGTGTCTTCAACATCTTCATTTA
CATCTGCCTCTGCGGATTCTGCTACATTTCATCCCTGAGGCAGGGAGAAT
CCATTGTGGGATATTTCTTTCGCACCGAAATCTCCACAATCGGCGATCGT
TTGCAGATCTTTAATGGTTTGATAGCTGGTGCTGTGATTTATACGTCGGC
AATCCTAAAACGCTGCAAGCTTTTGGGCACACTGACCATTCTACACAGCT
TGGATACGAACTTCTCGAACATTGGAGTACGTGTGAAATATTCGAGAATA
TTCCGGTACTCGCTACTGGTGCTGATCTTCAAGCTACTGATCCTGGGTGT
TTATTTCGTTGGAGTTTTCCGGCTGCTCGTCTCCCTGGATGTCACACCAT
CGTTCTGCGTTTGTATGACATTCTTTCTGCAACATTCGGTTGTCTCCATA
GCGATTTGTTTGTTCTGCGTGATTGCCTTCAGTTTCGAGCGGCGCCTCAG
TATCATCAATCAGGTGTTGAAGAACCTAGCCCATCAATGGGACACCCGAA
GCCTCAAGGCAGTGAATCAAAAACAGCGCTCTCTACAATGTCTCGATTCA
TTTTCCATGTACACCATTGTAACCAAGGATCCTGCGGAGATTATACAGGA
GTCCATGGAGATACATCATCTCATTTGCGAGGCAGCTGCCACGGCTAACA
AATATTTTACCTACCAATTGCTGACCATTATATCCATAGCATTTCTGATC
ATCGTTTTCGATGCATACTATGTTCTGGAGACGCTACTGGGAAAATCGAA
GCGCGAAAGCAAATTCAAAACTGTGGAATTTGTGACATTTTTCTCGTGTC
AAATGATTTTGTATCTGATCGCCATAATTTCCATTGTCGAGGGAAGTAAT
CGAGCCATCAAAAAGAGCGAGAAAACTGGAGGCATAGTGCACTCCCTACT
CAATAAAACCAAAAGTGCTGAGGTCAAGGAGAAACTGCAGCAATTCTCCA
TGCAGTTGATGCATCTGAAAATTAATTTTACTGCAGCTGGTCTGTTCAAC
ATCGACCGCACATTGTATTTCACGATCAGCGGGGCCTTGACCACTTATCT
CATCATCTTGCTGCAGTTCACATCCAATTCCCCGAACAATGGTTATGGGA
ATGGCAGCTCTTGCTGTGAGACCTTCAATAATATGACGAATCATACGCTT
TAGATGTGCTATCGATGTCATTACAATATGGGGGATGGAAATCGAAGGAA
GTCGATGGAGTCGGTGAAATGGTATTGAATACGTCCAGCAGAATGTGTAT
TTTTTGTAAATGTTATTGTTGTTGCTAAAAAAAAGTGTTTTCTGTCAATA
TAAACCAACGATTGGAAATAAATTTTTAATCGTTTAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAA

IP03356.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:15:10
Subject Length Description Subject Range Query Range Score Percent Strand
Gr28b-RB 1586 Gr28b-RB 1..1586 1..1586 7930 100 Plus
Gr28b-RD 1506 Gr28b-RD 628..1506 708..1586 4395 100 Plus
Gr28b-RC 1612 Gr28b-RC 732..1612 706..1586 4390 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:35:21
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 7458987..7459702 716..1 3520 99.4 Minus
chr2L 23010047 chr2L 7454261..7454824 1274..711 2820 100 Minus
chr2L 23010047 chr2L 7453886..7454197 1585..1274 1560 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:37:46 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:35:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7459927..7460642 716..1 3580 100 Minus
2L 23513712 2L 7455201..7455764 1274..711 2820 100 Minus
2L 23513712 2L 7454825..7455137 1586..1274 1565 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:08:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7459927..7460642 716..1 3580 100 Minus
2L 23513712 2L 7455201..7455764 1274..711 2820 100 Minus
2L 23513712 2L 7454825..7455137 1586..1274 1565 100 Minus
Blast to na_te.dros performed on 2019-03-15 19:35:19 has no hits.

IP03356.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:36:29 Download gff for IP03356.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 7453886..7454196 1275..1585 100 <- Minus
chr2L 7454261..7454821 714..1274 100 <- Minus
chr2L 7458990..7459702 1..713 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:20:20 Download gff for IP03356.complete
Subject Subject Range Query Range Percent Splice Strand
Gr28b-RB 1..1332 72..1403 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:25:49 Download gff for IP03356.complete
Subject Subject Range Query Range Percent Splice Strand
Gr28b-RB 1..1332 72..1403 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:13:09 Download gff for IP03356.complete
Subject Subject Range Query Range Percent Splice Strand
Gr28b-RB 1..1332 72..1403 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:45:34 Download gff for IP03356.complete
Subject Subject Range Query Range Percent Splice Strand
Gr28b-RB 1..1332 72..1403 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:03:31 Download gff for IP03356.complete
Subject Subject Range Query Range Percent Splice Strand
Gr28b-RB 1..1332 72..1403 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:54:14 Download gff for IP03356.complete
Subject Subject Range Query Range Percent Splice Strand
Gr28b-RB 1..1585 1..1585 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:25:49 Download gff for IP03356.complete
Subject Subject Range Query Range Percent Splice Strand
Gr28b-RB 1..1585 1..1585 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:13:09 Download gff for IP03356.complete
Subject Subject Range Query Range Percent Splice Strand
Gr28b-RB 1..1585 1..1585 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:45:34 Download gff for IP03356.complete
Subject Subject Range Query Range Percent Splice Strand
Gr28b-RB 1..1585 1..1585 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:03:31 Download gff for IP03356.complete
Subject Subject Range Query Range Percent Splice Strand
Gr28b-RB 1..1585 1..1585 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:36:29 Download gff for IP03356.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7454826..7455136 1275..1585 100 <- Minus
2L 7455201..7455761 714..1274 100 <- Minus
2L 7459930..7460642 1..713 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:36:29 Download gff for IP03356.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7454826..7455136 1275..1585 100 <- Minus
2L 7455201..7455761 714..1274 100 <- Minus
2L 7459930..7460642 1..713 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:36:29 Download gff for IP03356.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7454826..7455136 1275..1585 100 <- Minus
2L 7455201..7455761 714..1274 100 <- Minus
2L 7459930..7460642 1..713 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:13:09 Download gff for IP03356.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7454826..7455136 1275..1585 100 <- Minus
arm_2L 7455201..7455761 714..1274 100 <- Minus
arm_2L 7459930..7460642 1..713 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:52:51 Download gff for IP03356.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7454826..7455136 1275..1585 100 <- Minus
2L 7455201..7455761 714..1274 100 <- Minus
2L 7459930..7460642 1..713 100   Minus

IP03356.hyp Sequence

Translation from 71 to 1402

> IP03356.hyp
MSALRRVRKYFISSQVYEALRPLFFLTFLYGLTPFHVVRRKMGESYLKMS
CFGVFNIFIYICLCGFCYISSLRQGESIVGYFFRTEISTIGDRLQIFNGL
IAGAVIYTSAILKRCKLLGTLTILHSLDTNFSNIGVRVKYSRIFRYSLLV
LIFKLLILGVYFVGVFRLLVSLDVTPSFCVCMTFFLQHSVVSIAICLFCV
IAFSFERRLSIINQVLKNLAHQWDTRSLKAVNQKQRSLQCLDSFSMYTIV
TKDPAEIIQESMEIHHLICEAAATANKYFTYQLLTIISIAFLIIVFDAYY
VLETLLGKSKRESKFKTVEFVTFFSCQMILYLIAIISIVEGSNRAIKKSE
KTGGIVHSLLNKTKSAEVKEKLQQFSMQLMHLKINFTAAGLFNIDRTLYF
TISGALTTYLIILLQFTSNSPNNGYGNGSSCCETFNNMTNHTL*

IP03356.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:01:57
Subject Length Description Subject Range Query Range Score Percent Strand
Gr28b-PB 443 CG13788-PB 1..443 1..443 2250 100 Plus
Gr28b-PC 470 CG13788-PC 30..470 5..443 1532 68.9 Plus
Gr28b-PD 440 CG13788-PD 9..440 11..443 1397 66.3 Plus
Gr28b-PA 452 CG13788-PA 15..452 6..443 1395 64.4 Plus
Gr28b-PE 447 CG13788-PE 18..447 16..443 1303 64.5 Plus

IP03356.pep Sequence

Translation from 71 to 1402

> IP03356.pep
MSALRRVRKYFISSQVYEALRPLFFLTFLYGLTPFHVVRRKMGESYLKMS
CFGVFNIFIYICLCGFCYISSLRQGESIVGYFFRTEISTIGDRLQIFNGL
IAGAVIYTSAILKRCKLLGTLTILHSLDTNFSNIGVRVKYSRIFRYSLLV
LIFKLLILGVYFVGVFRLLVSLDVTPSFCVCMTFFLQHSVVSIAICLFCV
IAFSFERRLSIINQVLKNLAHQWDTRSLKAVNQKQRSLQCLDSFSMYTIV
TKDPAEIIQESMEIHHLICEAAATANKYFTYQLLTIISIAFLIIVFDAYY
VLETLLGKSKRESKFKTVEFVTFFSCQMILYLIAIISIVEGSNRAIKKSE
KTGGIVHSLLNKTKSAEVKEKLQQFSMQLMHLKINFTAAGLFNIDRTLYF
TISGALTTYLIILLQFTSNSPNNGYGNGSSCCETFNNMTNHTL*

IP03356.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 12:31:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14022-PA 666 GF14022-PA 224..666 1..443 2267 96.8 Plus
Dana\GF14023-PA 451 GF14023-PA 12..428 13..418 579 36.6 Plus
Dana\GF14022-PA 666 GF14022-PA 6..224 1..215 181 23.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 12:31:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23530-PA 443 GG23530-PA 1..443 1..443 2304 99.3 Plus
Dere\GG23531-PA 450 GG23531-PA 2..426 3..416 567 35.6 Plus
Dere\GG15094-PA 527 GG15094-PA 302..497 254..440 151 24.1 Plus
Dere\GG12856-PA 410 GG12856-PA 327..400 343..416 150 40.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 12:32:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10568-PA 452 GH10568-PA 14..452 5..443 1341 61.2 Plus
Dgri\GH13142-PA 462 GH13142-PA 28..462 10..443 1327 60.6 Plus
Dgri\GH13143-PA 447 GH13143-PA 2..428 3..418 587 35 Plus
Dgri\GH24883-PA 416 GH24883-PA 361..416 374..428 162 58.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:25:07
Subject Length Description Subject Range Query Range Score Percent Strand
Gr28b-PB 443 CG13788-PB 1..443 1..443 2250 100 Plus
Gr28b-PC 470 CG13788-PC 30..470 5..443 1532 68.9 Plus
Gr28b-PD 440 CG13788-PD 9..440 11..443 1397 66.3 Plus
Gr28b-PA 452 CG13788-PA 15..452 6..443 1395 64.4 Plus
Gr28b-PE 447 CG13788-PE 18..447 16..443 1303 64.5 Plus
Gr28a-PA 450 CG13787-PA 2..442 3..423 653 35.5 Plus
Gr66a-PB 527 CG7189-PB 319..497 256..440 164 24.6 Plus
Gr2a-PB 410 CG18531-PB 247..409 264..424 159 28.6 Plus
Gr2a-PC 428 CG18531-PC 369..427 371..424 156 54.2 Plus
Gr43a-PA 427 CG1712-PA 265..422 252..416 155 25.5 Plus
Gr43a-PB 449 CG1712-PB 287..444 252..416 155 25.5 Plus
Gr43a-PC 453 CG1712-PC 291..448 252..416 155 25.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 12:32:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17781-PA 665 GI17781-PA 225..665 2..443 2136 91.9 Plus
Dmoj\GI17782-PA 444 GI17782-PA 3..440 1..430 592 34.5 Plus
Dmoj\GI17781-PA 665 GI17781-PA 15..224 3..214 225 27.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 12:32:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25929-PA 665 GL25929-PA 224..664 2..442 2225 96.1 Plus
Dper\GL25930-PA 448 GL25930-PA 12..441 13..430 621 35 Plus
Dper\GL14254-PA 400 GL14254-PA 344..398 374..430 153 56.1 Plus
Dper\GL25929-PA 665 GL25929-PA 14..222 5..213 152 24.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 12:32:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\Gr28b-PA 665 GA12528-PA 224..664 2..442 2225 96.1 Plus
Dpse\Gr28a-PA 448 GA12527-PA 12..441 13..430 621 35 Plus
Dpse\Gr2a-PA 336 GA14976-PA 249..334 343..430 152 41.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 12:32:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13551-PA 443 GM13551-PA 1..443 1..443 2299 98.9 Plus
Dsec\GM13555-PA 367 GM13555-PA 2..359 3..423 448 32.8 Plus
Dsec\GM19140-PA 410 GM19140-PA 323..409 343..428 158 40.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 12:32:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22492-PA 666 GD22492-PA 224..666 1..443 2312 99.5 Plus
Dsim\GD22493-PA 450 GD22493-PA 2..442 3..423 585 35.3 Plus
Dsim\GD22492-PA 666 GD22492-PA 15..224 6..215 197 25.2 Plus
Dsim\GD16560-PA 310 GD16560-PA 254..309 374..428 155 58.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 12:32:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17606-PA 665 GJ17606-PA 225..665 2..443 2117 93.2 Plus
Dvir\GJ17607-PA 444 GJ17607-PA 2..428 3..418 582 34.4 Plus
Dvir\GJ17606-PA 665 GJ17606-PA 15..219 3..209 199 29.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 12:32:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24721-PA 636 GK24721-PA 235..636 41..443 1252 63.4 Plus
Dwil\GK24722-PA 449 GK24722-PA 12..442 13..424 588 34.3 Plus
Dwil\GK24721-PA 636 GK24721-PA 28..229 11..210 177 24.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 12:32:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18356-PA 666 GE18356-PA 224..666 1..443 2313 99.3 Plus
Dyak\GE18357-PA 450 GE18357-PA 2..445 3..426 574 34.6 Plus
Dyak\GE18356-PA 666 GE18356-PA 15..224 6..215 204 24.8 Plus
Dyak\GE14583-PA 173 GE14583-PA 19..172 273..428 159 30.8 Plus
Dyak\GE21317-PA 527 GE21317-PA 326..497 263..440 151 25 Plus