Clone IP03388 Report

Search the DGRC for IP03388

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:33
Well:88
Vector:pOT2
Associated Gene/TranscriptVhaM9.7-d-RA
Protein status:IP03388.pep: gold
Preliminary Size:267
Sequenced Size:556

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14909 2008-12-18 5.12 accounting

Clone Sequence Records

IP03388.complete Sequence

556 bp assembled on 2008-12-10

GenBank Submission: BT053706.1

> IP03388.complete
CAAACTCTCCGGAAATGGATAAGCACGTGGCATTCATGGTCATCACCGTT
TTCTGGCTACTATTCGCCATCATTGGGTTCCTGGTGTCCTACCGATACGA
GGAGCGTGGTCTAATCCGGTGCTGTGTGATCCTAACGGCTGTATGCTGCT
ACTTGGCCTGGATGGTCACCTTCGTGATGCAGTTGAATCCACTGACCGGA
CCGCGAGCCAAACAGAAGATTATCCTCGGCATGATAACCTACTGGCCCAG
GTCCATTATCCACGATGAAAAGGACCCATAGAAAAGCCGCAGATTATATA
TTTTTACATGCAGGCCTAAGTGTCCAAAATGTTCGTGTTTAGAAACCAAT
CGTTTTAAGACTATCTTCTTGAAAATAATTGCAAAACTTTCTGTGTCCCC
GTCGCCAATCGGCTTTTATTCAAGGCCATATATTATCGAACTATACCAAA
TCAAATATGCCGCCGGCTTTGGAATAAAATATTTATGTGTTATTAAAAAA
AAAAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAA

IP03388.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:15:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG14909-RA 494 CG14909-RA 1..494 1..494 2470 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:50:07
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 12799680..12800176 1..497 2485 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:37:52 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:50:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16975204..16975700 1..497 2485 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:32:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 16716035..16716531 1..497 2485 100 Plus
Blast to na_te.dros performed on 2019-03-16 09:50:05 has no hits.

IP03388.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:50:45 Download gff for IP03388.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 12799680..12800176 1..497 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:04:08 Download gff for IP03388.complete
Subject Subject Range Query Range Percent Splice Strand
CG14909-RA 1..267 15..281 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:22:12 Download gff for IP03388.complete
Subject Subject Range Query Range Percent Splice Strand
VhaM9.7-d-RA 1..267 15..281 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:06:55 Download gff for IP03388.complete
Subject Subject Range Query Range Percent Splice Strand
VhaM9.7-d-RA 1..267 15..281 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:46:50 Download gff for IP03388.complete
Subject Subject Range Query Range Percent Splice Strand
VhaM9.7-d-RA 1..267 15..281 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-10 18:14:05 Download gff for IP03388.complete
Subject Subject Range Query Range Percent Splice Strand
CG14909-RA 1..267 15..281 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:22:12 Download gff for IP03388.complete
Subject Subject Range Query Range Percent Splice Strand
VhaM9.7-d-RA 1..494 1..494 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:06:55 Download gff for IP03388.complete
Subject Subject Range Query Range Percent Splice Strand
VhaM9.7-d-RA 1..494 1..494 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:46:50 Download gff for IP03388.complete
Subject Subject Range Query Range Percent Splice Strand
VhaM9.7-d-RA 1..494 1..494 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:50:45 Download gff for IP03388.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16975204..16975700 1..497 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:50:45 Download gff for IP03388.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16975204..16975700 1..497 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:50:45 Download gff for IP03388.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16975204..16975700 1..497 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:06:55 Download gff for IP03388.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12800926..12801422 1..497 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:53:55 Download gff for IP03388.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16716035..16716531 1..497 100   Plus

IP03388.pep Sequence

Translation from 2 to 280

> IP03388.pep
NSPEMDKHVAFMVITVFWLLFAIIGFLVSYRYEERGLIRCCVILTAVCCY
LAWMVTFVMQLNPLTGPRAKQKIILGMITYWPRSIIHDEKDP*

IP03388.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 11:28:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17072-PA 88 GF17072-PA 1..87 5..91 257 48.3 Plus
Dana\GF20059-PA 83 GF20059-PA 1..82 5..86 140 31.7 Plus
Dana\GF23725-PA 89 GF23725-PA 3..86 6..91 128 36.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 11:28:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21840-PA 88 GG21840-PA 1..88 5..92 425 88.6 Plus
Dere\GG16199-PA 89 GG16199-PA 3..81 6..85 131 37.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 11:28:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19550-PA 88 GH19550-PA 1..88 5..92 317 58 Plus
Dgri\GH14789-PA 89 GH14789-PA 2..86 5..91 136 36 Plus
Dgri\GH15548-PA 92 GH15548-PA 12..78 15..81 129 35.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:21:43
Subject Length Description Subject Range Query Range Score Percent Strand
VhaM9.7-d-PA 88 CG14909-PA 1..88 5..92 475 100 Plus
VhaM9.7-b-PB 89 CG7625-PB 6..81 9..85 141 39.2 Plus
VhaM9.7-b-PA 89 CG7625-PA 6..81 9..85 141 39.2 Plus
VhaM9.7-c-PA 84 CG11589-PA 1..81 5..85 134 32.1 Plus
VhaM9.7-a-PC 85 CG1268-PC 4..83 10..86 133 31.2 Plus
VhaM9.7-a-PB 85 CG1268-PB 4..83 10..86 133 31.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 11:28:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23846-PA 88 GI23846-PA 1..88 5..92 306 56.8 Plus
Dmoj\Tes122-PA 89 GI11843-PA 2..86 5..91 144 37.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 11:28:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24534-PA 88 GL24534-PA 1..88 5..92 330 60.2 Plus
Dper\GL12731-PA 84 GL12731-PA 1..77 5..81 135 32.5 Plus
Dper\GL11891-PA 90 GL11891-PA 5..87 7..91 129 36.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 11:28:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13345-PA 88 GA13345-PA 1..88 5..92 331 60.2 Plus
Dpse\GA11084-PA 84 GA11084-PA 1..77 5..81 135 32.5 Plus
Dpse\GA20488-PA 90 GA20488-PA 5..87 7..91 129 36.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 11:28:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15188-PA 88 GM15188-PA 1..88 5..92 460 97.7 Plus
Dsec\GM22381-PA 89 GM22381-PA 3..81 6..85 131 37.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 11:28:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19123-PA 88 GD19123-PA 1..88 5..92 460 97.7 Plus
Dsim\GD14971-PA 89 GD14971-PA 3..81 6..85 131 37.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 11:28:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10560-PA 88 GJ10560-PA 1..88 5..92 287 54.5 Plus
Dvir\GJ13542-PA 89 GJ13542-PA 3..86 6..91 156 38.4 Plus
Dvir\GJ12571-PA 85 GJ12571-PA 12..78 15..81 133 37.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 11:28:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18963-PA 88 GK18963-PA 1..88 5..92 311 59.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 11:28:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24594-PA 88 GE24594-PA 1..88 5..92 418 88.6 Plus
Dyak\GE19771-PA 89 GE19771-PA 3..81 6..85 131 37.8 Plus
Dyak\GE19768-PA 89 GE19768-PA 3..81 6..85 131 37.8 Plus

IP03388.hyp Sequence

Translation from 2 to 280

> IP03388.hyp
NSPEMDKHVAFMVITVFWLLFAIIGFLVSYRYEERGLIRCCVILTAVCCY
LAWMVTFVMQLNPLTGPRAKQKIILGMITYWPRSIIHDEKDP*

IP03388.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:02:17
Subject Length Description Subject Range Query Range Score Percent Strand
VhaM9.7-d-PA 88 CG14909-PA 1..88 5..92 475 100 Plus
VhaM9.7-b-PB 89 CG7625-PB 6..81 9..85 141 39.2 Plus
VhaM9.7-b-PA 89 CG7625-PA 6..81 9..85 141 39.2 Plus
VhaM9.7-c-PA 84 CG11589-PA 1..81 5..85 134 32.1 Plus
VhaM9.7-a-PC 85 CG1268-PC 4..83 10..86 133 31.2 Plus