Clone IP03829 Report

Search the DGRC for IP03829

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:38
Well:29
Vector:pOT2
Associated Gene/TranscriptGr43a-RA
Protein status:IP03829.pep: gold
Preliminary Size:1350
Sequenced Size:1466

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1712 2005-01-01 Successful iPCR screen
Gr43a 2008-04-29 Release 5.5 accounting
Gr43a 2008-08-15 Release 5.9 accounting
Gr43a 2008-12-18 5.12 accounting

Clone Sequence Records

IP03829.complete Sequence

1466 bp (1466 high quality bases) assembled on 2005-04-11

GenBank Submission: BT023089

> IP03829.complete
TTCTGAATTACTATGGAGATATCCCAGCCCAGCATCGGCATCTTCTACAT
CAGCAAAGTGCTGGCCCTGGCTCCATATGCTACGGTCCGGAACTCCAAGG
GCCGGGTGGAAATTGGTCGCAGCTGGCTCTTCACTGTATACTCGGCCACA
TTAACGGTGGTTATGGTTTTTCTCACTTATCGGGGTCTCCTGTTCGATGC
TAACTCCGAAATTCCCGTGCGAATGAAGTCGGCTACGTCGAAGGTGGTGA
CGGCCCTGGACGTGTCTGTGGTGGTCATGGCCATTGTATCCGGTGTTTAC
TGTGGCCTTTTCAGCCTGAACGACACTCTCGAGCTCAACGATCGACTAAA
CAAGATCGATAATACCCTAAATGCCTACAATAACTTTCGAAGAGATCGAT
GGCGAGCCTTGGGCATGGCTGCCGTCTCTCTGCTGGCCATTTCGATTCTG
GTCGGCCTGGATGTAGGGACGTGGATGCGCATTGCCCAGGATATGAACAT
AGCTCAGTCGGATACGGAGCTCAATGTGCACTGGTACATTCCATTCTATA
GTCTTTACTTCATCCTCACGGGCTTGCAGGTTAACATTGCCAACACGGCC
TATGGACTAGGAAGGCGCTTTGGCCGTCTGAACCGAATGCTTTCGAGCAG
CTTTCTTGCAGAGAACAATGCAACCAGTGCCATCAAGCCACAAAAGGTCA
GCACCGTGAAGAACGTTAGCGTAAATCGGCCAGCGATGCCATCGGCACTC
CACGCGAGCCTGACGAAGCTGAACGGCGAAACCTTGCCCAGTGAAGCCGC
AGCCAAGAACAAGGGGTTGCTCCTCAAATCCCTGGCGGACAGTCACGAGT
CGCTGGGAAAATGTGTCCACCTCCTGTCCAACTCCTTCGGCATTGCGGTT
CTCTTCATCCTGGTGTCCTGTCTGCTGCACCTCGTGGCTACGGCCTACTT
CCTCTTTCTGGAACTGCTCAGCAAGCGGGATAACGGCTACCTGTGGGTGC
AGATGCTCTGGATTTGCTTTCACTTCCTGCGACTGCTCATGGTGGTGGAG
CCGTGCCACTTGGCTGCCCGAGAGTCCCGTAAAACGATCCAGATTGTTTG
CGAAATCGAGCGGAAAGTGCACGAGCCCATTCTCGCGGAGGCAGTTAAGA
AGTTTTGGCAGCAGTTACTCGTCGTAGATGCTGACTTCTCCGCCTGCGGA
TTGTGCCGCGTGAACCGCACCATTCTGACATCGTTTGCATCCGCCATAGC
CACCTATCTCGTGATTCTCATTCAGTTTCAACGGACCAATGGCTAAAGTT
ATACAAAAAGTGGCTTGTTTTTTATTAACACTATTAACTAAACGGAGTTC
TTGGATATTATTGATCTGTTAAAGTGTCTATGTGCTTGAATCAAGTTAGC
AAACAATAAAAAGCAAACGGGTTATTTTTCTTAGAACTTGCTAAAATTCA
AAAAAAAAAAAAAAAA

IP03829.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:38:49
Subject Length Description Subject Range Query Range Score Percent Strand
Gr43a-RA 1449 Gr43a-RA 1..1449 1..1449 7245 100 Plus
Gr43a-RB 1515 Gr43a-RB 1..802 1..802 4010 100 Plus
Gr43a-RB 1515 Gr43a-RB 866..1515 800..1449 3250 100 Plus
Gr43a.a 1507 Gr43a.a 858..1507 800..1449 3250 100 Plus
Gr43a.a 1507 Gr43a.a 213..794 221..802 2910 100 Plus
Gr43a.a 1507 Gr43a.a 1..201 21..221 1005 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 17:18:16
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 3278511..3278862 1233..882 1760 100 Minus
chr2R 21145070 chr2R 3278233..3278449 1449..1233 1085 100 Minus
chr2R 21145070 chr2R 3279506..3279670 517..353 810 99.4 Minus
chr2R 21145070 chr2R 3280360..3280525 166..1 800 98.8 Minus
chr2R 21145070 chr2R 3279064..3279207 802..659 720 100 Minus
chr2R 21145070 chr2R 3279260..3279404 661..517 710 99.3 Minus
chr2R 21145070 chr2R 3279736..3279869 354..221 670 100 Minus
chr2R 21145070 chr2R 3278919..3279000 881..800 410 100 Minus
chr2R 21145070 chr2R 3280242..3280297 221..166 280 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:39:35 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 17:18:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7391147..7391498 1233..882 1760 100 Minus
2R 25286936 2R 7390868..7391085 1450..1233 1090 100 Minus
2R 25286936 2R 7392996..7393161 166..1 830 100 Minus
2R 25286936 2R 7392142..7392306 517..353 825 100 Minus
2R 25286936 2R 7391896..7392040 661..517 725 100 Minus
2R 25286936 2R 7391700..7391843 802..659 720 100 Minus
2R 25286936 2R 7392372..7392505 354..221 670 100 Minus
2R 25286936 2R 7391555..7391636 881..800 410 100 Minus
2R 25286936 2R 7392878..7392933 221..166 280 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:29:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 7392346..7392697 1233..882 1760 100 Minus
2R 25260384 2R 7392067..7392284 1450..1233 1090 100 Minus
2R 25260384 2R 7394195..7394360 166..1 830 100 Minus
2R 25260384 2R 7393341..7393505 517..353 825 100 Minus
2R 25260384 2R 7393095..7393239 661..517 725 100 Minus
2R 25260384 2R 7392899..7393042 802..659 720 100 Minus
2R 25260384 2R 7393571..7393704 354..221 670 100 Minus
2R 25260384 2R 7392754..7392835 881..800 410 100 Minus
2R 25260384 2R 7394077..7394132 221..166 280 100 Minus
Blast to na_te.dros performed 2019-03-16 17:18:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dm88 4558 Dm88 DM88 4558bp 2777..2871 921..831 131 65.6 Minus

IP03829.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 17:19:18 Download gff for IP03829.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 3278233..3278448 1234..1449 100 <- Minus
chr2R 3278511..3278862 882..1233 100 <- Minus
chr2R 3278919..3278997 803..881 100 <- Minus
chr2R 3279064..3279204 662..802 100 <- Minus
chr2R 3279260..3279403 518..661 99 <- Minus
chr2R 3279506..3279668 355..517 99 <- Minus
chr2R 3279736..3279868 222..354 100 <- Minus
chr2R 3280242..3280296 167..221 100 <- Minus
chr2R 3280360..3280525 1..166 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:21:51 Download gff for IP03829.complete
Subject Subject Range Query Range Percent Splice Strand
Gr43a-RA 1..1284 13..1296 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:04:54 Download gff for IP03829.complete
Subject Subject Range Query Range Percent Splice Strand
Gr43a-RA 1..1284 13..1296 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:54:11 Download gff for IP03829.complete
Subject Subject Range Query Range Percent Splice Strand
Gr43a-RA 1..1284 13..1296 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:49:59 Download gff for IP03829.complete
Subject Subject Range Query Range Percent Splice Strand
Gr43a-RA 1..1284 13..1296 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:56:06 Download gff for IP03829.complete
Subject Subject Range Query Range Percent Splice Strand
Gr43a-RA 1..1284 13..1296 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:52:20 Download gff for IP03829.complete
Subject Subject Range Query Range Percent Splice Strand
Gr43a-RA 1..1449 1..1449 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:04:54 Download gff for IP03829.complete
Subject Subject Range Query Range Percent Splice Strand
Gr43a-RA 1..1449 1..1449 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:54:11 Download gff for IP03829.complete
Subject Subject Range Query Range Percent Splice Strand
Gr43a-RA 1..1449 1..1449 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:50:00 Download gff for IP03829.complete
Subject Subject Range Query Range Percent Splice Strand
Gr43a-RA 1..1449 1..1449 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:56:06 Download gff for IP03829.complete
Subject Subject Range Query Range Percent Splice Strand
Gr43a-RA 1..1449 1..1449 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:19:18 Download gff for IP03829.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7390869..7391084 1234..1449 100 <- Minus
2R 7391147..7391498 882..1233 100 <- Minus
2R 7391555..7391633 803..881 100 <- Minus
2R 7391700..7391840 662..802 100 <- Minus
2R 7391896..7392039 518..661 100 <- Minus
2R 7392142..7392304 355..517 100 <- Minus
2R 7392372..7392504 222..354 100 <- Minus
2R 7392878..7392932 167..221 100 <- Minus
2R 7392996..7393161 1..166 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:19:18 Download gff for IP03829.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7390869..7391084 1234..1449 100 <- Minus
2R 7391147..7391498 882..1233 100 <- Minus
2R 7391555..7391633 803..881 100 <- Minus
2R 7391700..7391840 662..802 100 <- Minus
2R 7391896..7392039 518..661 100 <- Minus
2R 7392142..7392304 355..517 100 <- Minus
2R 7392372..7392504 222..354 100 <- Minus
2R 7392878..7392932 167..221 100 <- Minus
2R 7392996..7393161 1..166 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:19:18 Download gff for IP03829.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7390869..7391084 1234..1449 100 <- Minus
2R 7391147..7391498 882..1233 100 <- Minus
2R 7391555..7391633 803..881 100 <- Minus
2R 7391700..7391840 662..802 100 <- Minus
2R 7391896..7392039 518..661 100 <- Minus
2R 7392142..7392304 355..517 100 <- Minus
2R 7392372..7392504 222..354 100 <- Minus
2R 7392878..7392932 167..221 100 <- Minus
2R 7392996..7393161 1..166 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:54:11 Download gff for IP03829.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3279205..3279345 662..802 100 <- Minus
arm_2R 3279401..3279544 518..661 100 <- Minus
arm_2R 3278374..3278589 1234..1449 100 <- Minus
arm_2R 3278652..3279003 882..1233 100 <- Minus
arm_2R 3279060..3279138 803..881 100 <- Minus
arm_2R 3279647..3279809 355..517 100 <- Minus
arm_2R 3279877..3280009 222..354 100 <- Minus
arm_2R 3280383..3280437 167..221 100 <- Minus
arm_2R 3280501..3280666 1..166 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:24:42 Download gff for IP03829.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7392068..7392283 1234..1449 100 <- Minus
2R 7392346..7392697 882..1233 100 <- Minus
2R 7392754..7392832 803..881 100 <- Minus
2R 7392899..7393039 662..802 100 <- Minus
2R 7393095..7393238 518..661 100 <- Minus
2R 7393341..7393503 355..517 100 <- Minus
2R 7393571..7393703 222..354 100 <- Minus
2R 7394077..7394131 167..221 100 <- Minus
2R 7394195..7394360 1..166 100   Minus

IP03829.pep Sequence

Translation from 12 to 1295

> IP03829.pep
MEISQPSIGIFYISKVLALAPYATVRNSKGRVEIGRSWLFTVYSATLTVV
MVFLTYRGLLFDANSEIPVRMKSATSKVVTALDVSVVVMAIVSGVYCGLF
SLNDTLELNDRLNKIDNTLNAYNNFRRDRWRALGMAAVSLLAISILVGLD
VGTWMRIAQDMNIAQSDTELNVHWYIPFYSLYFILTGLQVNIANTAYGLG
RRFGRLNRMLSSSFLAENNATSAIKPQKVSTVKNVSVNRPAMPSALHASL
TKLNGETLPSEAAAKNKGLLLKSLADSHESLGKCVHLLSNSFGIAVLFIL
VSCLLHLVATAYFLFLELLSKRDNGYLWVQMLWICFHFLRLLMVVEPCHL
AARESRKTIQIVCEIERKVHEPILAEAVKKFWQQLLVVDADFSACGLCRV
NRTILTSFASAIATYLVILIQFQRTNG*

IP03829.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 15:29:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12232-PA 427 GF12232-PA 1..427 1..427 1971 86.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 15:29:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10757-PA 427 GG10757-PA 1..427 1..427 2207 97.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 15:29:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20741-PA 418 GH20741-PA 1..418 1..427 1628 74 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:44:19
Subject Length Description Subject Range Query Range Score Percent Strand
Gr43a-PA 427 CG1712-PA 1..427 1..427 2155 100 Plus
Gr43a-PB 449 CG1712-PB 1..449 1..427 2122 95.1 Plus
Gr43a-PC 453 CG1712-PC 1..453 1..427 2107 94.3 Plus
Gr28b-PA 452 CG13788-PA 35..425 13..422 176 21 Plus
Gr28b-PE 447 CG13788-PE 27..420 12..422 170 20.7 Plus
Gr28b-PD 440 CG13788-PD 69..413 60..422 165 21.7 Plus
Gr28b-PB 443 CG13788-PB 252..416 265..422 155 25.5 Plus
Gr28b-PC 470 CG13788-PC 279..443 265..422 155 25.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 15:29:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20824-PA 426 GI20824-PA 1..426 1..427 1746 75.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 15:29:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10939-PA 427 GL10939-PA 1..427 1..427 1804 82 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 15:29:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\Gr43a-PA 427 GA14333-PA 1..427 1..427 1807 82 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 15:29:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20802-PA 369 GM20802-PA 110..369 187..427 1161 86.3 Plus
Dsec\GM20802-PA 369 GM20802-PA 1..105 1..105 448 86.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 15:29:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10264-PA 427 GD10264-PA 1..427 1..427 2238 98.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 15:29:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20557-PA 426 GJ20557-PA 1..426 1..427 1748 75.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 15:29:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22017-PA 430 GK22017-PA 1..430 1..427 1703 73.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 15:29:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24092-PA 427 GE24092-PA 1..427 1..427 2197 96.5 Plus

IP03829.hyp Sequence

Translation from 12 to 1295

> IP03829.hyp
MEISQPSIGIFYISKVLALAPYATVRNSKGRVEIGRSWLFTVYSATLTVV
MVFLTYRGLLFDANSEIPVRMKSATSKVVTALDVSVVVMAIVSGVYCGLF
SLNDTLELNDRLNKIDNTLNAYNNFRRDRWRALGMAAVSLLAISILVGLD
VGTWMRIAQDMNIAQSDTELNVHWYIPFYSLYFILTGLQVNIANTAYGLG
RRFGRLNRMLSSSFLAENNATSAIKPQKVSTVKNVSVNRPAMPSALHASL
TKLNGETLPSEAAAKNKGLLLKSLADSHESLGKCVHLLSNSFGIAVLFIL
VSCLLHLVATAYFLFLELLSKRDNGYLWVQMLWICFHFLRLLMVVEPCHL
AARESRKTIQIVCEIERKVHEPILAEAVKKFWQQLLVVDADFSACGLCRV
NRTILTSFASAIATYLVILIQFQRTNG*

IP03829.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:19:22
Subject Length Description Subject Range Query Range Score Percent Strand
Gr43a-PA 427 CG1712-PA 1..427 1..427 2155 100 Plus
Gr43a-PB 449 CG1712-PB 1..449 1..427 2122 95.1 Plus
Gr43a-PC 453 CG1712-PC 1..453 1..427 2107 94.3 Plus
Gr28b-PA 452 CG13788-PA 35..425 13..422 176 21 Plus
Gr28b-PE 447 CG13788-PE 27..420 12..422 170 20.7 Plus