Clone IP04007 Report

Search the DGRC for IP04007

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:40
Well:7
Vector:pOT2
Associated Gene/TranscriptCG11755-RA
Protein status:IP04007.pep: gold
Preliminary Size:465
Sequenced Size:724

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11755 2005-01-01 Successful iPCR screen
CG11755 2008-04-29 Release 5.5 accounting
CG11755 2008-08-15 Release 5.9 accounting
CG11755 2008-12-18 5.12 accounting

Clone Sequence Records

IP04007.complete Sequence

724 bp (724 high quality bases) assembled on 2005-08-25

GenBank Submission: BT023862

> IP04007.complete
TTTTTCTATTGGTCTTTTAGAAAATCTCAGACATGGATCCCGATGACGAC
CTCGTCCTGGAGAATGAGGCAGAGGAAATTGAACGGTTACAGCTTCCCGA
GGAGCTTAAAAAGCCCATTGATCCCGAGGAAGAGGATGAACGAGTAGCAC
GCATCGAATTCAATTGTTCTGGCTGTGAAATGCACGAGATGGTCCATTAT
TTTGGACGGAAACCGCCCTTTGCTCTAGGAGTCATATACCCAGAGGACAA
CTACGTGATGCGAGATCCTTTCCAACCACCTCCACCTCGTTGGCAGTCAA
AGCCGGAATACTATATCGCAATGGGGACTAAGTGCTCCATCTGCTCCAAG
ACGGTGTGCAAGGATCCTGGCTGCAGTTTCTACTATACAGCCTCTTTTTG
CTTGCCTTGTGGCAAGGAAGAATTAAAAAACTGGCCACCTGAGGCTCAAG
CTCGAATAAGAAAACAAATGTCTGTCAGTCAAGGCAGGCAAACATAAATT
AGTCTTTAAATATAAAACAGTAGTATGTAAAAATTATCTAAATAAGCAGT
GAAAGAGCTATTGGCTAGAAAGGATACATTTTAAACTTTATTCAATAATG
GAAACTCGCACTTATTCAAGTGCGGTTGATTGTATTGTTTGTATTGTATG
CTTTCTAATGCTTAAATATTATTGCAAAGTAAAATAAAACCAATCTGAAG
TTTAAAAAAAAAAAAAAAAAAAAA

IP04007.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:29:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG11755.a 808 CG11755.a 124..808 19..703 3425 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:44:42
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 4504225..4504927 1..703 3455 99.4 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:40:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:44:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8678253..8678956 1..704 3520 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:20:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 8419084..8419787 1..704 3520 100 Plus
Blast to na_te.dros performed on 2019-03-15 21:44:40 has no hits.

IP04007.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:45:22 Download gff for IP04007.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 4504225..4504927 1..703 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:22:25 Download gff for IP04007.complete
Subject Subject Range Query Range Percent Splice Strand
CG11755-RA 1..465 33..497 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:51:28 Download gff for IP04007.complete
Subject Subject Range Query Range Percent Splice Strand
CG11755-RA 1..465 33..497 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:57:23 Download gff for IP04007.complete
Subject Subject Range Query Range Percent Splice Strand
CG11755-RA 1..465 33..497 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:32:08 Download gff for IP04007.complete
Subject Subject Range Query Range Percent Splice Strand
CG11755-RA 1..465 33..497 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:02:12 Download gff for IP04007.complete
Subject Subject Range Query Range Percent Splice Strand
CG11755-RA 1..465 33..497 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:25:25 Download gff for IP04007.complete
Subject Subject Range Query Range Percent Splice Strand
CG11755-RA 1..465 33..497 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:51:28 Download gff for IP04007.complete
Subject Subject Range Query Range Percent Splice Strand
CG11755-RA 111..813 1..703 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:57:23 Download gff for IP04007.complete
Subject Subject Range Query Range Percent Splice Strand
CG11755-RA 111..813 1..703 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:32:08 Download gff for IP04007.complete
Subject Subject Range Query Range Percent Splice Strand
CG11755-RA 1..465 33..497 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:02:12 Download gff for IP04007.complete
Subject Subject Range Query Range Percent Splice Strand
CG11755-RA 111..813 1..703 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:45:22 Download gff for IP04007.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8678253..8678955 1..703 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:45:22 Download gff for IP04007.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8678253..8678955 1..703 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:45:22 Download gff for IP04007.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8678253..8678955 1..703 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:57:23 Download gff for IP04007.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4503975..4504677 1..703 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:10:41 Download gff for IP04007.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8419084..8419786 1..703 100   Plus

IP04007.pep Sequence

Translation from 32 to 496

> IP04007.pep
MDPDDDLVLENEAEEIERLQLPEELKKPIDPEEEDERVARIEFNCSGCEM
HEMVHYFGRKPPFALGVIYPEDNYVMRDPFQPPPPRWQSKPEYYIAMGTK
CSICSKTVCKDPGCSFYYTASFCLPCGKEELKNWPPEAQARIRKQMSVSQ
GRQT*

IP04007.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 14:01:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19914-PA 155 GF19914-PA 1..150 1..150 470 56.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 14:01:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12047-PA 157 GG12047-PA 4..157 1..154 711 84.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 14:01:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18008-PA 164 GH18008-PA 11..161 2..153 505 56.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:58:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG11755-PB 154 CG11755-PB 1..154 1..154 857 100 Plus
CG11755-PA 154 CG11755-PA 1..154 1..154 857 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 14:01:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10517-PA 158 GI10517-PA 12..155 4..148 547 66.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 14:01:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23522-PA 170 GL23522-PA 21..165 4..146 581 72.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 14:01:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11176-PA 171 GA11176-PA 21..166 4..146 592 72.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 14:01:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23752-PA 154 GM23752-PA 1..154 1..154 799 96.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 14:01:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18563-PA 130 GD18563-PA 1..101 1..101 476 89.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 14:01:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23198-PA 163 GJ23198-PA 27..163 12..150 502 62.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 14:01:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10995-PA 175 GK10995-PA 23..171 7..153 510 60 Plus
Dwil\GK12900-PA 175 GK12900-PA 23..171 7..153 509 60 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 14:01:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25895-PA 154 GE25895-PA 1..154 1..154 731 86.4 Plus

IP04007.hyp Sequence

Translation from 32 to 496

> IP04007.hyp
MDPDDDLVLENEAEEIERLQLPEELKKPIDPEEEDERVARIEFNCSGCEM
HEMVHYFGRKPPFALGVIYPEDNYVMRDPFQPPPPRWQSKPEYYIAMGTK
CSICSKTVCKDPGCSFYYTASFCLPCGKEELKNWPPEAQARIRKQMSVSQ
GRQT*

IP04007.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:21:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG11755-PB 154 CG11755-PB 1..154 1..154 857 100 Plus
CG11755-PA 154 CG11755-PA 1..154 1..154 857 100 Plus