Clone IP04025 Report

Search the DGRC for IP04025

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:40
Well:25
Vector:pOT2
Associated Gene/TranscriptCG12725-RA
Protein status:IP04025.pep: gold
Preliminary Size:492
Sequenced Size:1052

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12725 2005-01-01 Successful iPCR screen
CG12725 2008-04-29 Release 5.5 accounting
CG12725 2008-08-15 Release 5.9 accounting
CG12725 2008-12-18 5.12 accounting

Clone Sequence Records

IP04025.complete Sequence

1052 bp (1052 high quality bases) assembled on 2005-03-04

GenBank Submission: BT023040

> IP04025.complete
CATTCGCATGACGACGACAGTTTGATAGGGGATTCCAAGAGCAAACTTTT
ATCCGAACGAAGCAAAACTTAGAGCTTGTGTATAAAACGAAAAAAGTTGC
AGTTCGACGTGCCAGATACATATATATATATATATATATCTGGATTAGGA
TGCGTAAGATGCAAGTTCTAGTTCAGACGAGCGACGGCAAGAAGACGGTT
TACGATGTGGATCGCTTCGGAACGGTGGCCAACCTGAAGGCACGGATCGG
GCGAGCCATGTCCGTGCCCATGGGCTTCAGTCGGCTGTCCTACAAGGGTC
GCGAGCTGTCCAATCAGAGCATACTGGAGGATGTGGGCCATAAGTCCATT
CTGGATCTCACCTGGAAGCCGGTCGTCCTGACGCCCAAGCAATTGCGCGA
AAAGAAGATTGGCAAGTTTAGCAAGTTCGGCTATGGCAGGAAAAACGATA
GTGGTGAACATATGTCTACATTGATCGGCGGTTACCAGCAACGCATAGAT
CTGGAAAGTGACGATGATGAACTGGAGGCACAGGACTTGACTGAACTCGA
TTTGTTGTCCCTTAACTCCGATGATTCACTGGTCAACAACCAGACGGAGC
TAGAGCCGATTGCTCCATTGAATTTCTCTGGATCTGATTAAGAAGGCTAC
GAAGAACGACAATAAGCAGTAGACTGTATTAAATAATCTTCAATTCAAAT
GACTGCGCTCATTTCATTTCAAAGTTCCTTCCAATGATTTTCAAAATACA
AGCAGAACGGGTCTTAGAACAAATGCTTTATTTAAGTTGCATTATAAAAA
AAAAATTCGAGAATACCACCCATTTACGAATCATTTAAAGTAATTTAAAG
TAATTTCGAATTTGTTTACACTCAAGCAAATAATTAACGTCTCATGGCCA
ATGCCATAAAAATTCTTAAAATTTATGTATTATTTATGGACTGCATGGTA
TTCCTGAAAAGCTGAACTGTAGAACGAAAGCCATTTAACTCAAAAAATAT
TTATAAATATAGTTTAAATACATTCAAAAAAAAAAAAAAAAAAAAAAAAA
AA

IP04025.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:52:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG12725-RA 1025 CG12725-RA 1..1025 1..1025 5125 100 Plus
CG33223-RA 1046 CG33223-RA 458..733 116..388 860 88 Plus
CG32713-RA 555 CG32713-RA 1..242 150..388 810 89.6 Plus
CG33223-RA 1046 CG33223-RA 742..821 412..494 225 86.7 Plus
CG32713-RA 555 CG32713-RA 251..330 412..494 195 84.3 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:34:11
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 13292616..13293659 1025..1 4780 97.4 Minus
chrX 22417052 chrX 8357761..8358124 494..116 860 83.5 Minus
chrX 22417052 chrX 8349096..8349371 388..116 850 88 Minus
chrX 22417052 chrX 8348402..8348497 950..862 265 87.5 Minus
chrX 22417052 chrX 8348740..8348935 699..513 235 77 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:40:19 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:34:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13401837..13402863 1027..1 5135 100 Minus
X 23542271 X 8465983..8466346 494..116 860 83.5 Minus
X 23542271 X 8457319..8457594 388..116 850 88 Minus
X 23542271 X 8456632..8456727 950..862 265 87.5 Minus
X 23542271 X 8456963..8457158 699..513 235 77 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:41:11
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 13409935..13410961 1027..1 5135 100 Minus
X 23527363 X 8474169..8474444 388..116 860 88 Minus
X 23527363 X 8465417..8465692 388..116 860 88 Minus
X 23527363 X 8464730..8464787 950..893 245 94.8 Minus
X 23527363 X 8465061..8465136 699..624 200 84.2 Minus
X 23527363 X 8474119..8474160 453..412 165 92.8 Minus
X 23527363 X 8465367..8465408 453..412 165 92.8 Minus
X 23527363 X 8473813..8473888 699..624 155 80.2 Minus
Blast to na_te.dros performed on 2019-03-16 02:34:09 has no hits.

IP04025.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:34:45 Download gff for IP04025.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 13292650..13292854 787..991 99 <- Minus
chrX 13292874..13293659 1..786 95   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:22:34 Download gff for IP04025.complete
Subject Subject Range Query Range Percent Splice Strand
CG12725-RA 1..492 150..641 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:23:45 Download gff for IP04025.complete
Subject Subject Range Query Range Percent Splice Strand
CG12725-RA 1..492 150..641 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:13:52 Download gff for IP04025.complete
Subject Subject Range Query Range Percent Splice Strand
CG12725-RA 1..492 150..641 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:07:34 Download gff for IP04025.complete
Subject Subject Range Query Range Percent Splice Strand
CG12725-RA 1..492 150..641 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:15:50 Download gff for IP04025.complete
Subject Subject Range Query Range Percent Splice Strand
CG12725-RA 1..492 150..641 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:25:34 Download gff for IP04025.complete
Subject Subject Range Query Range Percent Splice Strand
CG12725-RA 1..492 150..641 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:23:45 Download gff for IP04025.complete
Subject Subject Range Query Range Percent Splice Strand
CG12725-RA 1..1025 1..1025 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:13:52 Download gff for IP04025.complete
Subject Subject Range Query Range Percent Splice Strand
CG12725-RA 1..1025 1..1025 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:07:34 Download gff for IP04025.complete
Subject Subject Range Query Range Percent Splice Strand
CG12725-RA 1..492 150..641 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:15:50 Download gff for IP04025.complete
Subject Subject Range Query Range Percent Splice Strand
CG12725-RA 1..1025 1..1025 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:34:45 Download gff for IP04025.complete
Subject Subject Range Query Range Percent Splice Strand
X 13401839..13402863 1..1025 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:34:45 Download gff for IP04025.complete
Subject Subject Range Query Range Percent Splice Strand
X 13401839..13402863 1..1025 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:34:45 Download gff for IP04025.complete
Subject Subject Range Query Range Percent Splice Strand
X 13401839..13402863 1..1025 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:13:52 Download gff for IP04025.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13295872..13296896 1..1025 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:44:09 Download gff for IP04025.complete
Subject Subject Range Query Range Percent Splice Strand
X 13409937..13410961 1..1025 100   Minus

IP04025.pep Sequence

Translation from 149 to 640

> IP04025.pep
MRKMQVLVQTSDGKKTVYDVDRFGTVANLKARIGRAMSVPMGFSRLSYKG
RELSNQSILEDVGHKSILDLTWKPVVLTPKQLREKKIGKFSKFGYGRKND
SGEHMSTLIGGYQQRIDLESDDDELEAQDLTELDLLSLNSDDSLVNNQTE
LEPIAPLNFSGSD*

IP04025.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:02:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22365-PA 267 GF22365-PA 1..88 1..86 328 70.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:02:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19048-PA 205 GG19048-PA 1..131 1..120 358 59.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:02:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12233-PA 234 GH12233-PA 1..89 1..87 270 56.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:23:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG12725-PA 163 CG12725-PA 1..163 1..163 827 100 Plus
CG32713-PB 184 CG32713-PB 1..178 1..162 461 60.3 Plus
CG32713-PA 184 CG32713-PA 1..178 1..162 461 60.3 Plus
CG33223-PB 184 CG33223-PB 1..178 1..162 461 60.3 Plus
CG33223-PA 184 CG33223-PA 1..178 1..162 461 60.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:02:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15768-PA 343 GI15768-PA 1..112 1..116 279 50 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:02:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20310-PA 226 GL20310-PA 1..109 4..105 215 43.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:02:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28796-PA 226 GA28796-PA 1..109 4..105 216 43.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:02:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11493-PA 171 GM11493-PA 1..151 1..155 577 76.8 Plus
Dsec\GM21345-PA 188 GM21345-PA 1..174 1..162 482 62.2 Plus
Dsec\GM21312-PA 189 GM21312-PA 1..175 1..162 477 61.5 Plus
Dsec\GM22658-PA 162 GM22658-PA 1..143 1..138 458 67.1 Plus
Dsec\GM12963-PA 162 GM12963-PA 1..143 1..138 456 66.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:02:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16110-PA 181 GD16110-PA 1..164 1..159 451 65.5 Plus
Dsim\GD16114-PA 183 GD16114-PA 1..169 1..162 436 60 Plus
Dsim\GD15887-PA 136 GD15887-PA 1..115 37..155 404 71.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:02:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18624-PA 313 GJ18624-PA 1..112 1..116 288 50.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:02:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19892-PA 254 GK19892-PA 1..82 4..83 276 61 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:02:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17453-PA 238 GE17453-PA 1..114 1..113 377 68.4 Plus

IP04025.hyp Sequence

Translation from 149 to 640

> IP04025.hyp
MRKMQVLVQTSDGKKTVYDVDRFGTVANLKARIGRAMSVPMGFSRLSYKG
RELSNQSILEDVGHKSILDLTWKPVVLTPKQLREKKIGKFSKFGYGRKND
SGEHMSTLIGGYQQRIDLESDDDELEAQDLTELDLLSLNSDDSLVNNQTE
LEPIAPLNFSGSD*

IP04025.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:21:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG12725-PA 163 CG12725-PA 1..163 1..163 827 100 Plus
CG33223-PB 184 CG33223-PB 1..178 1..162 461 60.3 Plus
CG33223-PA 184 CG33223-PA 1..178 1..162 461 60.3 Plus
CG32713-PB 184 CG32713-PB 1..178 1..162 461 60.3 Plus
CG32713-PA 184 CG32713-PA 1..178 1..162 461 60.3 Plus