Clone IP04049 Report

Search the DGRC for IP04049

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:40
Well:49
Vector:pOT2
Associated Gene/Transcriptcomm3-RC
Protein status:IP04049.pep: gold
Preliminary Size:486
Sequenced Size:1397

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13446 2005-01-01 Successful iPCR screen
comm3 2008-04-29 Release 5.5 accounting
comm3 2008-08-15 Release 5.9 accounting
comm3 2008-12-18 5.12 accounting

Clone Sequence Records

IP04049.complete Sequence

1397 bp (1397 high quality bases) assembled on 2006-01-20

GenBank Submission: BT024408

> IP04049.complete
AAACGGTCACGTTTGGCGGCTTCAGTTTATATGTACGTTCTCGTGCCAAA
TTTCAGTAAATAATAAACTGGTACAGTGATTGATTGATTGATGGACTTGT
TGAGTGAGTGAGCTGCAATCATGGCTAATTACACAGTGGTGCGTGTGACA
AAAGTGCAACCATACCTGCATGTGGTGGACAGTGGTTATGCAGCTTTAGC
CCATGTCGATAGCTTTTATGCGCCGACCTTGGAGGCCGGATTACTGGATT
TCCATGCAAATGGCACTGCGACCCATGCCAATTTAACGGCGGAAAGAGTC
CTCGTCCTCATCGGCGAGGAAAACTACAGCTATCGATCGACCTCGACCAT
AGTCCTCATGGTTTCCGCCTGGATCCTGCTCATTCTGGGCTTTGTCTTCT
GCTGCTGCGCCGAGTGCTGTGGCGTCAGCGTGTGGCGTGGCAAAAAGACA
CGGTCCAGCATCGATATCGATGGCTTAAATCAGGCGGAACAAGGTGGAAA
TGGAAATGGGAGTGCCTCCGCCCGCGATGCAACTGCAGACCGTGCCAATC
ACAGTGATCCCACGATCGAGATCTGCCGCCGCTGTCCGCCGGACTACGAG
GCGGAGTCCCTGCCCTCGTACACGATTGTTTCCGGACTGCCGACGTACGA
TGATGCACTGGAGGAGTTCCGCAAGGCGGGCATTATCCTCACACCCGCCA
TGGTGCCCATCATCAAGATCTTCGAGTGCAACGAGACCGGCAAGGAGCAG
GCGGTGGGCTACAGCCTGGTGGAGACGAACATAGCGAGTGCGGATGCTGC
CGCGGATAATGTGTCGCTGGCCTCGACCACCTGCAATTGTGGCAACTCCT
CGCCCACCTCATCGCTGCCCAGTTACAGTGCCGCCACGGCGGCTGTGATG
GCAGCGGCGGCTGCTGCTCCTCCCCAGGTGATCGAACTATCACCGGAACA
CCTGGCCTCGTTGTCCCAGAAGCGTCTCTCCCTGCAGATCTCATTCAATA
ACTCGGTGCGCCGGCAGTCGCCGCTCAGGAATCATCTGCTGAGATCCCGA
GCGGTGGGAAATACCGCCGGTGTTGGTCCATCGGAGGCAGCCGGTCCTGC
CATTCACGGGTCGGGAGCTCACGGAGTCCATGGCGGCGGAGGTGCAACCA
TTCTGCCCGTTCTGCATCGCTCCTCCTCTACAATTTCACTGTCCAACGAA
CGCCAGTTGCTGGATCAACGCCTCAGGCATTTGCATCATCGCGGTTCCCT
CTACTGAGAACCCATATAGAGCATTCAAACTGCCTGACTAATCCTTCCTA
AAGGGTATTCCCTATGTTAATCATATGCCAAGAGTTGTTAGTTTTAAGAC
ACAGACATAATAAACATGCGTTGTTTTGAAAAAAAAAAAAAAAAAAA

IP04049.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:21:32
Subject Length Description Subject Range Query Range Score Percent Strand
comm3.b 1981 comm3.b 597..1973 1..1377 6885 100 Plus
comm3-RC 1678 comm3-RC 294..1670 1..1377 6885 100 Plus
comm3-RD 1850 comm3-RD 1004..1842 539..1377 4195 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:42:17
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 15603112..15603953 1377..536 4150 99.5 Minus
chr3L 24539361 chr3L 15637100..15637637 538..1 2690 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:40:31 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:42:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15613184..15614025 1377..536 4210 100 Minus
3L 28110227 3L 15647200..15647737 538..1 2690 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:13:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 15606284..15607125 1377..536 4210 100 Minus
3L 28103327 3L 15640300..15640837 538..1 2690 100 Minus
Blast to na_te.dros performed on 2019-03-16 15:42:15 has no hits.

IP04049.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:43:16 Download gff for IP04049.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 15603110..15603950 539..1378 99 <- Minus
chr3L 15637100..15637637 1..538 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:33:05 Download gff for IP04049.complete
Subject Subject Range Query Range Percent Splice Strand
comm3-RC 1..1137 121..1257 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:37:52 Download gff for IP04049.complete
Subject Subject Range Query Range Percent Splice Strand
comm3-RC 1..1137 121..1257 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:51:47 Download gff for IP04049.complete
Subject Subject Range Query Range Percent Splice Strand
comm3-RC 1..1137 121..1257 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:12:51 Download gff for IP04049.complete
Subject Subject Range Query Range Percent Splice Strand
comm3-RC 1..1137 121..1257 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:52:07 Download gff for IP04049.complete
Subject Subject Range Query Range Percent Splice Strand
comm3-RC 1..1137 121..1257 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:33:05 Download gff for IP04049.complete
Subject Subject Range Query Range Percent Splice Strand
comm3-RC 1..1377 1..1377 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:37:51 Download gff for IP04049.complete
Subject Subject Range Query Range Percent Splice Strand
comm3-RC 1..1377 1..1377 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:51:47 Download gff for IP04049.complete
Subject Subject Range Query Range Percent Splice Strand
comm3-RC 26..1402 1..1377 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:12:51 Download gff for IP04049.complete
Subject Subject Range Query Range Percent Splice Strand
comm3-RC 1..1377 1..1377 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:52:07 Download gff for IP04049.complete
Subject Subject Range Query Range Percent Splice Strand
comm3-RC 26..1402 1..1377 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:43:16 Download gff for IP04049.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15613182..15614022 539..1378 99 <- Minus
3L 15647200..15647737 1..538 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:43:16 Download gff for IP04049.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15613182..15614022 539..1378 99 <- Minus
3L 15647200..15647737 1..538 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:43:16 Download gff for IP04049.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15613182..15614022 539..1378 99 <- Minus
3L 15647200..15647737 1..538 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:51:47 Download gff for IP04049.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15606282..15607122 539..1378 99 <- Minus
arm_3L 15640300..15640837 1..538 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:00:57 Download gff for IP04049.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15606282..15607122 539..1378 99 <- Minus
3L 15640300..15640837 1..538 100   Minus

IP04049.pep Sequence

Translation from 120 to 1256

> IP04049.pep
MANYTVVRVTKVQPYLHVVDSGYAALAHVDSFYAPTLEAGLLDFHANGTA
THANLTAERVLVLIGEENYSYRSTSTIVLMVSAWILLILGFVFCCCAECC
GVSVWRGKKTRSSIDIDGLNQAEQGGNGNGSASARDATADRANHSDPTIE
ICRRCPPDYEAESLPSYTIVSGLPTYDDALEEFRKAGIILTPAMVPIIKI
FECNETGKEQAVGYSLVETNIASADAAADNVSLASTTCNCGNSSPTSSLP
SYSAATAAVMAAAAAAPPQVIELSPEHLASLSQKRLSLQISFNNSVRRQS
PLRNHLLRSRAVGNTAGVGPSEAAGPAIHGSGAHGVHGGGGATILPVLHR
SSSTISLSNERQLLDQRLRHLHHRGSLY*

IP04049.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 13:22:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10388-PA 254 GF10388-PA 7..159 141..291 530 77.8 Plus
Dana\GF10386-PA 154 GF10386-PA 1..118 1..117 500 78.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 13:22:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13532-PA 425 GG13532-PA 186..425 141..378 1216 97.1 Plus
Dere\GG13531-PA 165 GG13531-PA 1..124 1..124 603 90.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 13:22:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10048-PA 253 GH10048-PA 7..253 139..378 749 70.1 Plus
Dgri\GH23316-PA 431 GH23316-PA 187..431 141..378 748 70.2 Plus
Dgri\GH23315-PA 183 GH23315-PA 1..126 1..125 285 54.6 Plus
Dgri\GH14478-PA 148 GH14478-PA 1..126 1..125 284 54.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:24:12
Subject Length Description Subject Range Query Range Score Percent Strand
comm3-PC 378 CG42334-PC 1..378 1..378 1942 100 Plus
comm3-PE 423 CG42334-PE 186..423 141..378 1213 100 Plus
comm3-PD 423 CG42334-PD 186..423 141..378 1213 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 13:22:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13626-PA 435 GI13626-PA 198..435 141..378 711 69.4 Plus
Dmoj\GI13625-PA 206 GI13625-PA 1..139 1..135 307 47.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 13:22:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25496-PA 161 GL25496-PA 1..105 1..115 373 66.1 Plus
Dper\GL25499-PA 68 GL25499-PA 1..68 306..378 201 63 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 13:22:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17371-PA 422 GA17371-PA 184..422 141..378 910 78.8 Plus
Dpse\GA12295-PA 156 GA12295-PA 1..105 1..115 374 66.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 13:22:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24476-PA 423 GM24476-PA 186..423 141..378 1232 98.7 Plus
Dsec\GM24475-PA 150 GM24475-PA 1..127 1..127 650 94.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 13:22:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12549-PA 241 GD12549-PA 3..241 140..378 1230 98.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 13:22:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13964-PA 439 GJ13964-PA 151..439 66..378 762 56.2 Plus
Dvir\GJ13963-PA 144 GJ13963-PA 1..136 1..129 332 50 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 13:22:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20752-PA 455 GK20752-PA 203..455 141..378 851 74.5 Plus
Dwil\GK20741-PA 190 GK20741-PA 1..151 1..138 381 56.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 13:22:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19827-PA 423 GE19827-PA 186..423 141..378 1213 97.1 Plus
Dyak\GE19826-PA 157 GE19826-PA 1..124 1..124 615 91.1 Plus
Dyak\GE22835-PA 157 GE22835-PA 1..124 1..124 604 90.3 Plus

IP04049.hyp Sequence

Translation from 120 to 1256

> IP04049.hyp
MANYTVVRVTKVQPYLHVVDSGYAALAHVDSFYAPTLEAGLLDFHANGTA
THANLTAERVLVLIGEENYSYRSTSTIVLMVSAWILLILGFVFCCCAECC
GVSVWRGKKTRSSIDIDGLNQAEQGGNGNGSASARDATADRANHSDPTIE
ICRRCPPDYEAESLPSYTIVSGLPTYDDALEEFRKAGIILTPAMVPIIKI
FECNETGKEQAVGYSLVETNIASADAAADNVSLASTTCNCGNSSPTSSLP
SYSAATAAVMAAAAAAPPQVIELSPEHLASLSQKRLSLQISFNNSVRRQS
PLRNHLLRSRAVGNTAGVGPSEAAGPAIHGSGAHGVHGGGGATILPVLHR
SSSTISLSNERQLLDQRLRHLHHRGSLY*

IP04049.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:22:27
Subject Length Description Subject Range Query Range Score Percent Strand
comm3-PC 378 CG42334-PC 1..378 1..378 1942 100 Plus
comm3-PE 423 CG42334-PE 186..423 141..378 1213 100 Plus
comm3-PD 423 CG42334-PD 186..423 141..378 1213 100 Plus