Clone IP04131 Report

Search the DGRC for IP04131

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:41
Well:31
Vector:pOT2
Associated Gene/TranscriptCG12883-RA
Protein status:IP04131.pep: gold
Preliminary Size:474
Sequenced Size:996

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12883 2005-01-01 Successful iPCR screen
CG12883 2008-04-29 Release 5.5 accounting
CG12883 2008-08-15 Release 5.9 accounting
CG12883 2008-12-18 5.12 accounting

Clone Sequence Records

IP04131.complete Sequence

996 bp (996 high quality bases) assembled on 2005-03-04

GenBank Submission: BT022992

> IP04131.complete
TAAAAAGCAATACAATAGGAAGTAAGAGTAAACAAGGTGTGGGTCCACCT
GTCGTCAAGTGAACATAATCTATAAAGAGATACACCCAATTTAAGAGGCT
GATACACCAAACATTCGAAATGGCCAGCAGTTCGAGCAAGAACAAGACCC
TACAGCTGATAAGGTGCTTCTGCGGATGCAGTAACATGACTGTCGCCGAG
GTGCGGAGGATCTATGTTCTGTCGAACAGTGTGCACGAGACGCTGCTGGA
TGCGGAGGCCACCAGACTGCTGCGCAAGTTCATGGAGACGAGGCGGTCCG
GCGACAAGGACGAGGCCGAGCAGTACTTGGACATCTACGAGAAGTGCGCC
GAGTTTCTCGCTGAGCACCAGCGCACCTTCACCCAGGACGAGGTGGACGA
ACTGGTCGATCTGGGCCTGCCCTACGACCTGGAGCAGGATCTCTCCAGGC
GCATGCTCAGCGCCGATCGCACGGACATCAGCAGCGGGCTCTATCGCATC
CAGAGCAAATGTCGCAACGAAATCGAGGGCAGCAGCGATTTTCGAGACTT
CAGGGACGCCATCGCTGATAAGATGCGTCGGGTGCCAAAATGATATAGTC
GGTGCAAATCGATGTTTTTTTTGTGTGCACTGTTCAACGCCTACCAAAGT
CACATGGTTACCTTTGGAGCATCGCACTTGACCCAGCTCCTATCTTTACC
TTTCCCAGTGCCTTGGAGGCTTCTACAATCGTCCAAGTGTATAGAAGACC
GCAGTTTAGTCATAGTCATACAACGAAGAAACGGAAACCGTCCTCCTATC
TCATTGTGGCTTCCGAGTCGTGCTAGAGCCTAAGCTCACCAAACATTCAC
ATTCTACTAAACCCACAGAAGAGCCACTCTTTACTTAACTTAAAAATATA
GTTGTTTATATGCCTTGTAATGTTGTACGCACTAGGAAGTATAATAAATC
TGATGCGGAATGCAACCGATACACATAAAAAAAAAAAAAAAAAAAA

IP04131.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:51:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG12883-RA 1098 CG12883-RA 97..1073 1..977 4885 100 Plus
Sce-RA 1804 Sce-RA 1636..1804 977..809 845 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:24:51
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 23502425..23503262 139..976 4175 99.9 Plus
chr3R 27901430 chr3R 23502217..23502356 1..140 685 99.3 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:40:52 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:24:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27679499..27680337 139..977 4195 100 Plus
3R 32079331 3R 27679291..27679430 1..140 700 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:40:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 27420330..27421168 139..977 4195 100 Plus
3R 31820162 3R 27420122..27420261 1..140 700 100 Plus
Blast to na_te.dros performed on 2019-03-15 12:24:50 has no hits.

IP04131.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:25:41 Download gff for IP04131.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 23502217..23502356 1..140 99 -> Plus
chr3R 23502427..23503262 141..976 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:23:00 Download gff for IP04131.complete
Subject Subject Range Query Range Percent Splice Strand
CG12883-RA 1..474 120..593 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:23:07 Download gff for IP04131.complete
Subject Subject Range Query Range Percent Splice Strand
CG12883-RA 1..474 120..593 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:42:28 Download gff for IP04131.complete
Subject Subject Range Query Range Percent Splice Strand
CG12883-RA 1..474 120..593 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:06:59 Download gff for IP04131.complete
Subject Subject Range Query Range Percent Splice Strand
CG12883-RA 1..474 120..593 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 19:58:37 Download gff for IP04131.complete
Subject Subject Range Query Range Percent Splice Strand
CG12883-RA 1..474 120..593 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:24:46 Download gff for IP04131.complete
Subject Subject Range Query Range Percent Splice Strand
CG12883-RA 1..976 1..976 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:23:07 Download gff for IP04131.complete
Subject Subject Range Query Range Percent Splice Strand
CG12883-RA 1..976 1..976 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:42:28 Download gff for IP04131.complete
Subject Subject Range Query Range Percent Splice Strand
CG12883-RA 1..976 1..976 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:06:59 Download gff for IP04131.complete
Subject Subject Range Query Range Percent Splice Strand
CG12883-RA 1..976 1..976 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 19:58:37 Download gff for IP04131.complete
Subject Subject Range Query Range Percent Splice Strand
CG12883-RA 1..976 1..976 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:25:41 Download gff for IP04131.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27679291..27679430 1..140 100 -> Plus
3R 27679501..27680336 141..976 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:25:41 Download gff for IP04131.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27679291..27679430 1..140 100 -> Plus
3R 27679501..27680336 141..976 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:25:41 Download gff for IP04131.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27679291..27679430 1..140 100 -> Plus
3R 27679501..27680336 141..976 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:42:28 Download gff for IP04131.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23505013..23505152 1..140 100 -> Plus
arm_3R 23505223..23506058 141..976 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:43:30 Download gff for IP04131.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27420332..27421167 141..976 100   Plus
3R 27420122..27420261 1..140 100 -> Plus

IP04131.pep Sequence

Translation from 119 to 592

> IP04131.pep
MASSSSKNKTLQLIRCFCGCSNMTVAEVRRIYVLSNSVHETLLDAEATRL
LRKFMETRRSGDKDEAEQYLDIYEKCAEFLAEHQRTFTQDEVDELVDLGL
PYDLEQDLSRRMLSADRTDISSGLYRIQSKCRNEIEGSSDFRDFRDAIAD
KMRRVPK*

IP04131.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:59:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16297-PA 135 GF16297-PA 1..135 23..157 580 80 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:59:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11568-PA 157 GG11568-PA 1..157 1..157 781 93 Plus
Dere\GG10047-PA 147 GG10047-PA 1..135 1..149 222 41.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:59:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16509-PA 161 GH16509-PA 1..159 1..156 574 67.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:20:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG12883-PA 157 CG12883-PA 1..157 1..157 800 100 Plus
CG14610-PB 147 CG14610-PB 1..136 1..150 223 40 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:59:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22020-PA 157 GI22020-PA 1..155 1..155 520 63.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:59:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13707-PA 135 GL13707-PA 1..135 23..157 605 85.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:59:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11882-PB 157 GA11882-PB 1..157 1..157 685 82.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:59:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16350-PA 157 GM16350-PA 1..157 1..157 817 99.4 Plus
Dsec\GM10505-PA 147 GM10505-PA 1..134 1..148 221 39.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:59:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21346-PA 157 GD21346-PA 1..157 1..157 820 99.4 Plus
Dsim\GD19501-PA 147 GD19501-PA 1..134 1..148 219 39.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:59:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10469-PA 158 GJ10469-PA 3..158 2..157 595 69.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:59:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11764-PA 157 GK11764-PA 1..157 1..157 675 80.3 Plus
Dwil\GK25466-PA 142 GK25466-PA 2..138 5..142 485 67.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:59:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23753-PA 157 GE23753-PA 1..157 1..157 775 93.6 Plus
Dyak\GE25814-PA 131 GE25814-PA 1..118 23..148 225 44.4 Plus

IP04131.hyp Sequence

Translation from 119 to 592

> IP04131.hyp
MASSSSKNKTLQLIRCFCGCSNMTVAEVRRIYVLSNSVHETLLDAEATRL
LRKFMETRRSGDKDEAEQYLDIYEKCAEFLAEHQRTFTQDEVDELVDLGL
PYDLEQDLSRRMLSADRTDISSGLYRIQSKCRNEIEGSSDFRDFRDAIAD
KMRRVPK*

IP04131.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:23:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG12883-PA 157 CG12883-PA 1..157 1..157 800 100 Plus
CG14610-PB 147 CG14610-PB 1..136 1..150 223 40 Plus