IP04179.complete Sequence
3843 bp assembled on 2007-02-09
GenBank Submission: BT030110
> IP04179.complete
TGCGGACGTTCGTTGTTTAGAGCTCGGCCATAAAGTCGTGTGGCAAAGTG
GCACTTGACAAAAATAAAAAAAGTTACAAACCTTCAACAACAATAAGAAA
AATATTTAATAAAAAAAATATATATTATAGAGGGCACACAACGTGCGGGG
GCAAAGTGCAAATGGTAACGGTAATTTGCAGACATTAGTTGCCACACACA
CACACACACACACACACAAGCAAACGGTGCGGTGATTAAAGGCAATGGAA
GGAGAGGTGCGAAAAATGTCACATTACGAATACGCAGTGTGTGCCCGAGT
TAAATGGTGAAATTTAAAAGCTGTGCGAGCTGGAATTGAAAATATTTATC
GCAAAGTTGTTTGGCCACTTAGTATGCCAGGCACGTAGTGCATTTTTGTG
ATGTGGATACGGCTCTTTGATTGTTTTATTAGCGATTCCCTTGGACAGGA
CCTAAAACGTCAGTTTCGGATGAGAGTATTTAAAGTTATGGAGGATTAGA
AAGTAGTACATTGAAAATTTGAATTTAACCAAAAACTAAAATTGTTCTAA
AGTGAAATTAAAAACGAATAAATATATTAAATAAATTGGAAATTAAGTAA
GTGGAGCTTACACATTAATCAAAAATTTAAATGCTATGGCTTCGACTTTT
GTCATCAGTAATAACGAAGGAGAAGAAAAACTTGAGCTCCAATAAATAAG
ATATTAAGAATAAAGCCGCACTTTTGGCGATTCATAAAACAAATATAGAT
AGAAATTCATAAAGTAAATATCTATATATATATATATATAACCAAGTCAG
CCATGAGCCAGATGCAACTGCAATCGCAGCGCGTTCGCCGCGCCCGTCAT
CATCGCCGCAATCAGTCCGCAGAGCCGTGCGAGTGCCTTCGTCCTGTGAT
AAGGGTTTTTGGTCTGCTGACTTCATTCGGTAAGCTCAAGTGCGCGGAAA
TCCGAGCCAGTGGAATAAGACTTGTCGGTGCCGGTGCCCAGGTGACCCCC
GTTTCGAGATAATGCCAATCTCGATACGAGGCTATGATGCATGTGCATGT
GCATGCATTTATGTATGAATGTGCAATGCTTTTCTGGCCCTTATTTGGAA
TGTTTACCCTTGACAAATCGTAGGAAATACTTGTGCATGGGAACCATTGC
CTCGGGATGTGTTGAGTGCTGTGGCTTATTATATTTCTTGGCACTGAATG
GGATTCGCAAGACGAAGACGATGCTGAATGGGGACACGCTCTTATTGGCT
GCTTTTATTGTTCCTTTCAATTCATATAATATTACTCTTTGAGCAATATT
TTCATTGTACACAAAGGTTTTGCATTTGTTTGAGAAGACTGGCAAAATAA
ATGTACATAAAAGGAAATGGTTTTCCATATTCACAGAGCACATATAGCAC
AGAATATGTGCTCTAATGAACAGGATATTTGACCTAATGTAATTTGGTAA
AATAAATAAATGCCATCCAATACTACTGAAATTCCAGTTTAGCTTAACAA
TTAAATAGAACACAGAGAGTAAATTGGTAGAAGATTAATTTCCCTTTTTT
TGCGTCATTTAATTACAATTCAATTATGCTTTTTTTGTACAACCCAGCTT
TGTGTTACATTTTTTCCGTTTAAATTGAGGCAATAATTTTAGATTGACAG
CCTGAAATTTAATGGCATTTCGTTTGTCAATTTACGAAGTCAAATTTAAT
TTATTAAACAGGCAAGGTAAAGTGAAGCAAAAACTTAATAAATAATAATA
TTACCTTTCTGAGATGAATTCAGTTTGGTTGCACAACGTAACTTTTTCAC
CCTGTATCCGCATTCTAATCTACGAAAATGCAATCACATTTTTTCATCCC
AATTTTTCTGCCATCTGGTGAAGTTATCAAAGTTGGCTTAAACGCTTATC
GTGGCCAATCATAACGATTTTCCTCCACCATCTGACATTTTCCTAATGCG
CTTAAGATAGTGCACCGCCGTTTTTTTATACAGAATTTGATAAATCGCCC
AGCTGCAGGCAGGCCAACAAAAACTTCGGGTCAAGTTCAAACTAATTTCT
TTGCAAATTGTTTTGGGGTCCATCATGGGTGCAGTGGCACGCAGGAAAAC
AAAGTATAAAATCTCTGTAGTTCATAAGCTCCGCATTATAGGGATCGGGT
AAGAGGGATGGGGTTTTCCAAGGAAACTCTCTGGCAGAGCCATTAACAAG
GCATTGGCCTCTATGCAGCTTGCAGCTTGCAGCTCACGACTGGCATCCTG
TGCCAAGAGCAGAGTTTTCCCAGCCCGATTTTCCCCTTATCAGCAACTTT
TCCATACGGTCGACAATGAGCTGTGTTGTTAGCCTTTAGGCGCCAGCCAT
TCGCCAAGTTTTCCTCTTGCCCGGCATCTATTTTTCCCCCACCGCTTTCA
ATTATCCAGATAATTTTTGCATGTTTTTTCGATTTCCGCTTTTTCAATTT
TTATCTCCGTTGACAGCATTTAATGTAATTGGTTTGGTTTCGGTTCTGCA
GTTGTGCTTAAATATGGGGCATACATATACATATATCTAACTGGCTAATC
TGATTGGTTTTTCGCGACCCGGCATAATAAAAACAACTTAATTAGATTGT
ATTTTTATGGACCACTGGGCGTGGTGGCTCCATAACCACATCTAACCATA
TCTTATACACTCAAAGTGGATTTGGCTAAGACAAAATGTGAAGCGGAACC
ATAATGTGGTTAGAATATGAATGCCCTGCGGAGGGCTGTTCGACAAAAAT
ATAGAAACCTTTTAAGTTATAAAATTTAAGTTCGTCATGAATATTGAAGT
TTCTTCCAAGCTATTTATTATTAATTATCATTATGTTATTTCGTAATGTG
TAGGACATTGCCTTCTTAAAATACTCTATTGCAAATGATGTAAGCTTCAG
TAAAATTGCGATAAACTTCTTGAGCTCACCTCGTTTCCATTCATTGGTTT
TGTATTACATTTTATGGCCAAAGCATGGTAAACAAAAAAGGCCCAGCTCA
ATAAATATGCTTATAAATATATTTGCCTAGACACACTCACATTATTTTAT
AGGCTCGTTCAAGGATAACACTCCTCGTTTCAACCCGCCAAAAAGGACCC
CCCGCACCGAACCTTTCTTTAGCCATTTTTCATTTCAGTTATCTGCGGCG
TTGGCGTTGATGTCTACATGCATGGCTATCGGGCCGGTCTTTATATAGTT
TTTTCAGCCGTGCTGGTAATGTTTATCGAGATCAAGTGGCTTGTGACTAT
CTTCCTGCAACTTCAGTGCGCAGAGGATAATTACCAGCGAAGGTCCTGCA
GCTGCTTGGCCTGCTGGCGACTTTCAGCGATTTGTGGCGGTTGGCGACCC
ACTCCTGTTTATGCGGTCATCGGCATCTGCCTGATCCTGTATCCCCACAA
TCTGTGGCTGAGTTATGTGGCCGGGATGTTCCTGATACTCCTCGGACTCC
TCAGACTGTGCACGCTGCTCCGATTCAGCGCCTCGAAGGAGGAGGGTCTC
CTGCCGCAGTGCGACTTTGAAAAGGTGTCGAGCTTTGTGGATACCATGGA
GGATGATTTCGCGGAGATTGGTGCCACGCAAGCGGGATTGGATGAGGAAG
CGGAGGAGGAGGGCGACGACCACACCGCCCTAGACGACGATGTTTGCTAA
TAGTTTAAGCCAGCTTTTCTGCCTAATGTAATGTGAGATTTTAAACGACT
TAACAAATGTCTAATAATATACAGTTTGTAAAGAGGTTTCGATTTAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
IP04179.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 17:06:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14086-RB | 3745 | CG14086-RB | 1..3745 | 1..3745 | 18695 | 99.9 | Plus |
CG14086-RA | 665 | CG14086-RA | 127..665 | 3207..3745 | 2695 | 100 | Plus |
CG14086-RA | 665 | CG14086-RA | 1..127 | 803..929 | 635 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:04:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3L | 24539361 | chr3L | 19265256..19268454 | 1..3199 | 15710 | 99.5 | Plus |
chr3L | 24539361 | chr3L | 19268850..19269099 | 3275..3524 | 1250 | 100 | Plus |
chr3L | 24539361 | chr3L | 19269163..19269384 | 3524..3745 | 1110 | 100 | Plus |
chr3L | 24539361 | chr3L | 19268505..19268580 | 3200..3275 | 365 | 98.7 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:41:06 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:04:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19275791..19278989 | 1..3199 | 15965 | 99.9 | Plus |
3L | 28110227 | 3L | 19279385..19279634 | 3275..3524 | 1250 | 100 | Plus |
3L | 28110227 | 3L | 19279698..19279922 | 3524..3748 | 1125 | 100 | Plus |
3L | 28110227 | 3L | 19279040..19279115 | 3200..3275 | 380 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:01:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28103327 | 3L | 19268891..19272089 | 1..3199 | 15965 | 99.9 | Plus |
3L | 28103327 | 3L | 19272485..19272734 | 3275..3524 | 1250 | 100 | Plus |
3L | 28103327 | 3L | 19272798..19273022 | 3524..3748 | 1125 | 100 | Plus |
3L | 28103327 | 3L | 19272140..19272215 | 3200..3275 | 380 | 100 | Plus |
Blast to na_te.dros performed 2019-03-16 22:04:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 1050..1156 | 2769..2877 | 152 | 63.6 | Plus |
Tc3 | 1743 | Tc3 TC3 1743bp | 267..306 | 2812..2851 | 119 | 77.5 | Plus |
IP04179.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:05:21 Download gff for
IP04179.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3L | 19265256..19268454 | 1..3199 | 97 | -> | Plus |
chr3L | 19268505..19268579 | 3200..3274 | 98 | -> | Plus |
chr3L | 19268850..19269098 | 3275..3523 | 100 | -> | Plus |
chr3L | 19269163..19269384 | 3524..3745 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed on 2008-12-08 17:23:11 has no hits.
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:08:11 Download gff for
IP04179.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14086-RB | 1..483 | 3168..3650 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed on 2013-08-04 18:08:15 has no hits.
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 15:18:27 has no hits.
Sim4 to dmel-all-CDS-r6.02.fasta performed on 2014-11-27 16:32:19 has no hits.
Sim4 to dmel-all-transcript-r5.12.fasta performed on 2008-11-10 17:37:13 has no hits.
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:08:11 Download gff for
IP04179.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14086-RB | 1..3745 | 1..3745 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed on 2013-08-04 18:08:15 has no hits.
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 17:33:28 Download gff for
IP04179.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14086-RA | 1..126 | 803..928 | 100 | == | Plus |
CG14086-RA | 127..570 | 3207..3650 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed on 2014-11-27 16:32:19 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:05:21 Download gff for
IP04179.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19275791..19278989 | 1..3199 | 99 | -> | Plus |
3L | 19279040..19279114 | 3200..3274 | 100 | -> | Plus |
3L | 19279385..19279633 | 3275..3523 | 100 | -> | Plus |
3L | 19279698..19279919 | 3524..3745 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:05:21 Download gff for
IP04179.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19275791..19278989 | 1..3199 | 99 | -> | Plus |
3L | 19279040..19279114 | 3200..3274 | 100 | -> | Plus |
3L | 19279385..19279633 | 3275..3523 | 100 | -> | Plus |
3L | 19279698..19279919 | 3524..3745 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:05:21 Download gff for
IP04179.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19275791..19278989 | 1..3199 | 99 | -> | Plus |
3L | 19279040..19279114 | 3200..3274 | 100 | -> | Plus |
3L | 19279385..19279633 | 3275..3523 | 100 | -> | Plus |
3L | 19279698..19279919 | 3524..3745 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:08:15 Download gff for
IP04179.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19272798..19273019 | 3524..3745 | 100 | | Plus |
arm_3L | 19268891..19272089 | 1..3199 | 99 | -> | Plus |
arm_3L | 19272140..19272214 | 3200..3274 | 100 | -> | Plus |
arm_3L | 19272485..19272733 | 3275..3523 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:41:09 Download gff for
IP04179.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19268891..19272089 | 1..3199 | 99 | -> | Plus |
3L | 19272140..19272214 | 3200..3274 | 100 | -> | Plus |
3L | 19272485..19272733 | 3275..3523 | 100 | -> | Plus |
3L | 19272798..19273019 | 3524..3745 | 100 | | Plus |
IP04179.pep Sequence
Translation from 3167 to 3649
> IP04179.pep
MHGYRAGLYIVFSAVLVMFIEIKWLVTIFLQLQCAEDNYQRRSCSCLACW
RLSAICGGWRPTPVYAVIGICLILYPHNLWLSYVAGMFLILLGLLRLCTL
LRFSASKEEGLLPQCDFEKVSSFVDTMEDDFAEIGATQAGLDEEAEEEGD
DHTALDDDVC*
IP04179.pep Blast Records
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:55:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG16029-PA | 212 | GG16029-PA | 53..212 | 1..160 | 644 | 90.6 | Plus |
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:55:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dgri\GH17172-PA | 124 | GH17172-PA | 1..124 | 1..160 | 364 | 50.9 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:55:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14086-PD | 212 | CG14086-PD | 53..212 | 1..160 | 856 | 100 | Plus |
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:55:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmoj\GI11785-PA | 205 | GI11785-PA | 52..205 | 1..160 | 492 | 64.6 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:55:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL20929-PA | 221 | GL20929-PA | 57..221 | 1..160 | 543 | 74.5 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:55:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA12754-PA | 148 | GA12754-PA | 1..148 | 18..160 | 467 | 73.6 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:55:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM15020-PA | 143 | GM15020-PA | 1..143 | 18..160 | 602 | 96.5 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:55:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD14797-PA | 212 | GD14797-PA | 53..212 | 1..160 | 819 | 96.9 | Plus |
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:55:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\GJ13486-PA | 180 | GJ13486-PA | 52..180 | 1..160 | 347 | 51.8 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:55:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE19598-PA | 212 | GE19598-PA | 53..212 | 1..160 | 661 | 92.5 | Plus |
Dyak\GE23082-PA | 236 | GE23082-PA | 77..236 | 1..160 | 658 | 91.9 | Plus |
IP04179.hyp Sequence
Translation from 3167 to 3649
> IP04179.hyp
MHGYRAGLYIVFSAVLVMFIEIKWLVTIFLQLQCAEDNYQRRSCSCLACW
RLSAICGGWRPTPVYAVIGICLILYPHNLWLSYVAGMFLILLGLLRLCTL
LRFSASKEEGLLPQCDFEKVSSFVDTMEDDFAEIGATQAGLDEEAEEEGD
DHTALDDDVC*
IP04179.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:24:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14086-PD | 212 | CG14086-PD | 53..212 | 1..160 | 856 | 100 | Plus |