Clone IP04187 Report

Search the DGRC for IP04187

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:41
Well:87
Vector:pOT2
Associated Gene/TranscriptCG14274-RA
Protein status:IP04187.pep: gold
Preliminary Size:411
Sequenced Size:1601

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14274 2005-01-01 Successful iPCR screen
CG14274 2008-04-29 Release 5.5 accounting
CG14274 2008-08-15 Release 5.9 accounting
CG14274 2008-12-18 5.12 accounting

Clone Sequence Records

IP04187.complete Sequence

1601 bp (1601 high quality bases) assembled on 2005-03-04

GenBank Submission: BT022976

> IP04187.complete
ACAGAACCTCCCGAACGTCTTGGAGCGGAAAATTCGAGAAAATCACAGCG
CGCGAGTGCCAGAAAATATTTGAAAAATCTGCCAACGAAAAGGGAATAAA
TCAAAGAAAGGAAATTATTGTGTGAATCATGCCGGGAATCCTATTGCCAC
TGGCGCTATTGGCCCTCGTTTCAAATGGCGCAGCCATCAGGTGTTATGTC
TGCGATTCCAGTGATAATCCCAGTTGCGCCGATCTGGGCTCGAATTCCAG
CATAGTGGCGGAGGAATGCACTTTGGACAAAATGAAATCGCTGGACACCT
GGCTATTTGACTTGAATAAGTTCTCATATTTCGATAATGGCGCCAACAAA
AGTCCGCTCATGAATTGCCAAAAAGTTGTGGCCAAAGACCCTGATACAAG
GAAAGTGGTGACGGCGCGCTTCTGCCAACTGGACACCGGCGACTCGGATG
CCTGCGAGATCCTGCGTACCAAGCTTCGCATCCCGAGCCCCGAGGAGCGG
GAGCAGCGGAATCGCAACCAAAACAAGCGAAGGAAGGGTCACGGCCAGGA
TGCGGAGGAGGATGACGAAATCTCCGCAGAGGATGCGTTCTTCTGCGGCA
TCTGTAAATCGCATCGCTGCAATGGTGCGGCGGCCGTAACGCTTTCCTTG
GCTACGATTCTGGCCATGATTGCGCTCCAATTGGGCTGCTAAGCCAGTTG
GATGGTGTGTGAGGGATATGGACAGATAACCGTGAAACGAGTGGTGGCAT
GATGGTTGCATTTAGGTTTTGATTACTTTGTAAATATTTGAGTGCAATGT
CGCTGATTCGTACAGGTTGCTTCAATGGCACACACTACTTAACCCCATTA
ACCCCCTACTCCCTTAACCCTAGAAATGTAAGCACAGCACAGACACACAC
ACGATACACCGATACAGTACATACAAGAGGAAGGAAAACACACACGGAAA
AGTTCGCTTTGATTCAAAACAAATATGAAACTTTCGATTTTCAAAATAAA
TACCGGCAAAATAAAGAGTAGGGATATGTGTTAACCATACATCCTATATA
TCAATATAAAAATGGCATTCTATGCCATTAGCTCTTGTTGTTCAGCTTTA
TTATGTTACTATTCAGATTGTTAGTTTTAATGGCTTGGAGCGATGTGCAT
AGGAATTCACCAATTGCCTTTAATTCTCATATAATTTCTTAGGTAAATTG
AAAAGTGCTAAATGATTCCAAAGTGCTTATATGTCCTAGTCAATGAATTC
GTGTTAGAATATTGAAAATTTGATAGTACGTAAATTGACTGTAAAAGCCG
CAAGCAAAAACAATCAACTTAATGCAAGACGCGAATTTAGGAATCACGTG
AAACAAATGCAATAAATGTTAGTAAATGTGCAATTAGATGAAAATGTCAA
CGAAAAGCAATGCAACAATTATTACGTGAGCTTCAAATCGGCTAAAAACA
AACAACAACTATATAGTACCATATGTTTTTTGCGACGCGTCGAGCTCTCA
GTTCTGCTTAGTTTGTAAGCGTTTTTTGAAATGGAAACTAAATTGAACAT
TCCGAGCACACAATAAATGCTGTATGACAGTATAAAAAAAAAAAAAAAAA
A

IP04187.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:51:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG14274-RA 1707 CG14274-RA 71..1657 1..1587 7935 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:02:12
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 8339779..8340967 391..1583 5765 99.1 Plus
chr2L 23010047 chr2L 8337232..8337409 1..178 875 99.4 Plus
chr2L 23010047 chr2L 8339102..8339234 262..394 650 99.2 Plus
chr2L 23010047 chr2L 8337499..8337586 177..264 440 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:41:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:02:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8340864..8342060 391..1587 5985 100 Plus
2L 23513712 2L 8338312..8338489 1..178 890 100 Plus
2L 23513712 2L 8340182..8340314 262..394 650 99.2 Plus
2L 23513712 2L 8338579..8338666 177..264 440 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:40:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8340864..8342060 391..1587 5985 100 Plus
2L 23513712 2L 8338312..8338489 1..178 890 100 Plus
2L 23513712 2L 8340182..8340314 262..394 650 99.2 Plus
2L 23513712 2L 8338579..8338666 177..264 440 100 Plus
Blast to na_te.dros performed 2019-03-16 10:02:11
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker2 7672 Stalker2 STALKER2 7672bp 6898..7003 928..1023 112 63 Plus

IP04187.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:03:12 Download gff for IP04187.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 8337232..8337408 1..177 99 -> Plus
chr2L 8337500..8337585 178..263 100 -> Plus
chr2L 8339104..8339230 264..390 100 -> Plus
chr2L 8339779..8340967 391..1583 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:23:12 Download gff for IP04187.complete
Subject Subject Range Query Range Percent Splice Strand
CG14274-RA 1..564 129..692 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:22:56 Download gff for IP04187.complete
Subject Subject Range Query Range Percent Splice Strand
CG14274-RA 1..564 129..692 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:54:34 Download gff for IP04187.complete
Subject Subject Range Query Range Percent Splice Strand
CG14274-RA 1..564 129..692 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:06:49 Download gff for IP04187.complete
Subject Subject Range Query Range Percent Splice Strand
CG14274-RA 1..564 129..692 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:52:38 Download gff for IP04187.complete
Subject Subject Range Query Range Percent Splice Strand
CG14274-RA 1..564 129..692 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:24:31 Download gff for IP04187.complete
Subject Subject Range Query Range Percent Splice Strand
CG14274-RA 1..1583 1..1583 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:22:56 Download gff for IP04187.complete
Subject Subject Range Query Range Percent Splice Strand
CG14274-RA 1..1583 1..1583 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:54:34 Download gff for IP04187.complete
Subject Subject Range Query Range Percent Splice Strand
CG14274-RA 26..1608 1..1583 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:06:49 Download gff for IP04187.complete
Subject Subject Range Query Range Percent Splice Strand
CG14274-RA 1..1583 1..1583 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:52:38 Download gff for IP04187.complete
Subject Subject Range Query Range Percent Splice Strand
CG14274-RA 26..1608 1..1583 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:03:12 Download gff for IP04187.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8338312..8338488 1..177 100 -> Plus
2L 8338580..8338665 178..263 100 -> Plus
2L 8340184..8340310 264..390 100 -> Plus
2L 8340864..8342056 391..1583 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:03:12 Download gff for IP04187.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8338312..8338488 1..177 100 -> Plus
2L 8338580..8338665 178..263 100 -> Plus
2L 8340184..8340310 264..390 100 -> Plus
2L 8340864..8342056 391..1583 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:03:12 Download gff for IP04187.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8338312..8338488 1..177 100 -> Plus
2L 8338580..8338665 178..263 100 -> Plus
2L 8340184..8340310 264..390 100 -> Plus
2L 8340864..8342056 391..1583 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:54:34 Download gff for IP04187.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8338312..8338488 1..177 100 -> Plus
arm_2L 8338580..8338665 178..263 100 -> Plus
arm_2L 8340184..8340310 264..390 100 -> Plus
arm_2L 8340864..8342056 391..1583 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:43:18 Download gff for IP04187.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8340864..8342056 391..1583 100   Plus
2L 8338312..8338488 1..177 100 -> Plus
2L 8338580..8338665 178..263 100 -> Plus
2L 8340184..8340310 264..390 100 -> Plus

IP04187.pep Sequence

Translation from 128 to 691

> IP04187.pep
MPGILLPLALLALVSNGAAIRCYVCDSSDNPSCADLGSNSSIVAEECTLD
KMKSLDTWLFDLNKFSYFDNGANKSPLMNCQKVVAKDPDTRKVVTARFCQ
LDTGDSDACEILRTKLRIPSPEEREQRNRNQNKRRKGHGQDAEEDDEISA
EDAFFCGICKSHRCNGAAAVTLSLATILAMIALQLGC*

IP04187.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:58:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14637-PA 190 GF14637-PA 14..190 14..187 679 74.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:58:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10536-PA 187 GG10536-PA 1..187 1..187 867 91.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:58:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11592-PA 185 GH11592-PA 2..166 13..173 601 74.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:32:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG14274-PA 187 CG14274-PA 1..187 1..187 981 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:58:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17161-PA 207 GI17161-PA 22..181 15..171 620 74.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:58:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19614-PA 205 GL19614-PA 7..198 3..185 649 66.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:58:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12874-PA 205 GA12874-PA 7..198 3..185 648 66.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:58:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16897-PA 188 GM16897-PA 1..188 1..187 967 98.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:58:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23525-PA 188 GD23525-PA 1..188 1..187 963 98.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:58:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17666-PA 204 GJ17666-PA 10..186 3..173 605 71.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:58:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23780-PA 320 GK23780-PA 132..300 18..176 538 64.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:58:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18756-PA 187 GE18756-PA 1..187 1..187 873 94.1 Plus

IP04187.hyp Sequence

Translation from 128 to 691

> IP04187.hyp
MPGILLPLALLALVSNGAAIRCYVCDSSDNPSCADLGSNSSIVAEECTLD
KMKSLDTWLFDLNKFSYFDNGANKSPLMNCQKVVAKDPDTRKVVTARFCQ
LDTGDSDACEILRTKLRIPSPEEREQRNRNQNKRRKGHGQDAEEDDEISA
EDAFFCGICKSHRCNGAAAVTLSLATILAMIALQLGC*

IP04187.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:24:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG14274-PA 187 CG14274-PA 1..187 1..187 981 100 Plus