Clone IP04201 Report

Search the DGRC for IP04201

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:42
Well:1
Vector:pOT2
Associated Gene/TranscriptCG11112-RC
Protein status:IP04201.pep: validated full length
Preliminary Size:1230
Sequenced Size:668

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11112 2005-01-01 Successful iPCR screen
CG11112 2008-04-29 Release 5.5 accounting
CG11112 2008-08-15 Release 5.9 accounting
CG11112 2008-12-18 5.12 accounting

Clone Sequence Records

IP04201.complete Sequence

668 bp (668 high quality bases) assembled on 2005-03-01

GenBank Submission: BT022977

> IP04201.complete
CGGTTTTGTACGATCGCTTTGGTGCTGCTCTGTGTGCTCCACGTCTCAAA
TCAGAAGCCATTTTTACCTGTTTTAAACAACATCCACAAACACTTCGAGG
ATAAGGTCATAATGATAAACGAAATGTTCAATGGTAACAACGATGATAGC
TCTGCACCGGAACCGGAACCGGAACCATCACACGCGAAACCCAATACATA
TTCAAATAAGAAGGCAAACACTAAAGAGGACGAAAAGAGGCAATTCCTGA
ACACGCTGGTCAAGCTTTGTAAATCAGAAACAGAAAAGGGATTTGTAAAT
CCCAAACAAACCATCAGTAATATTAACACGATCACGAACAACATCAGCAT
GCCGGAAATTCAATTGCCACCGATTACGGTTGTCATCGTGAAGGATGAAA
AGGAGCTGGCCAAATACCAAGAGAAATCTAAAAACGGGGCCATAATAATC
AAACGTCGTAGCAACGCCAAGGAGGATACCAAACCTGCACCCAGAACGGG
GTTGCAAGAAAGGACTAAGAAAGGATTGAGTGCGGGCATTAAGAAGTGCG
TCCTTATGAAAATCAAAGAACTTAATGTTATAAAAGCGTAACCGAACTAA
CTTTCTAAATTAAATTAAACATTCAATTTAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAA

IP04201.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:54:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG11112-RC 708 CG11112-RC 48..680 1..633 3165 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:51:27
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 3288261..3288868 22..629 3010 99.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:41:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:51:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7400875..7401486 22..633 3060 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:43:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 7402074..7402685 22..633 3060 100 Plus
Blast to na_te.dros performed on 2019-03-15 19:51:25 has no hits.

IP04201.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:52:35 Download gff for IP04201.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 3288176..3288197 1..22 100 -> Plus
chr2R 3288262..3288868 23..629 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:23:15 Download gff for IP04201.complete
Subject Subject Range Query Range Percent Splice Strand
CG11112-RC 4..594 1..591 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:26:40 Download gff for IP04201.complete
Subject Subject Range Query Range Percent Splice Strand
CG11112-RC 4..594 1..591 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:59:27 Download gff for IP04201.complete
Subject Subject Range Query Range Percent Splice Strand
CG11112-RC 4..594 1..591 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:10:45 Download gff for IP04201.complete
Subject Subject Range Query Range Percent Splice Strand
CG11112-RC 4..594 1..591 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:25:29 Download gff for IP04201.complete
Subject Subject Range Query Range Percent Splice Strand
CG11112-RC 4..594 1..591 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:29:37 Download gff for IP04201.complete
Subject Subject Range Query Range Percent Splice Strand
CG11112-RC 4..632 1..629 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:26:40 Download gff for IP04201.complete
Subject Subject Range Query Range Percent Splice Strand
CG11112-RC 4..632 1..629 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:59:27 Download gff for IP04201.complete
Subject Subject Range Query Range Percent Splice Strand
CG11112-RC 48..676 1..629 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:10:45 Download gff for IP04201.complete
Subject Subject Range Query Range Percent Splice Strand
CG11112-RC 4..632 1..629 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:25:29 Download gff for IP04201.complete
Subject Subject Range Query Range Percent Splice Strand
CG11112-RC 48..676 1..629 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:52:35 Download gff for IP04201.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7400790..7400811 1..22 100 -> Plus
2R 7400876..7401482 23..629 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:52:35 Download gff for IP04201.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7400790..7400811 1..22 100 -> Plus
2R 7400876..7401482 23..629 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:52:35 Download gff for IP04201.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7400790..7400811 1..22 100 -> Plus
2R 7400876..7401482 23..629 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:59:27 Download gff for IP04201.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3288295..3288316 1..22 100 -> Plus
arm_2R 3288381..3288987 23..629 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:47:14 Download gff for IP04201.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7402075..7402681 23..629 100   Plus
2R 7401989..7402010 1..22 100 -> Plus

IP04201.hyp Sequence

Translation from 0 to 590

> IP04201.hyp
RFCTIALVLLCVLHVSNQKPFLPVLNNIHKHFEDKVIMINEMFNGNNDDS
SAPEPEPEPSHAKPNTYSNKKANTKEDEKRQFLNTLVKLCKSETEKGFVN
PKQTISNINTITNNISMPEIQLPPITVVIVKDEKELAKYQEKSKNGAIII
KRRSNAKEDTKPAPRTGLQERTKKGLSAGIKKCVLMKIKELNVIKA*

IP04201.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:24:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG11112-PC 197 CG11112-PC 2..197 1..196 1010 100 Plus

IP04201.pep Sequence

Translation from 111 to 590

> IP04201.pep
MINEMFNGNNDDSSAPEPEPEPSHAKPNTYSNKKANTKEDEKRQFLNTLV
KLCKSETEKGFVNPKQTISNINTITNNISMPEIQLPPITVVIVKDEKELA
KYQEKSKNGAIIIKRRSNAKEDTKPAPRTGLQERTKKGLSAGIKKCVLMK
IKELNVIKA*

IP04201.pep Blast Records

Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:20:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23276-PA 395 GG23276-PA 1..138 5..140 337 56.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:56:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG11112-PC 197 CG11112-PC 39..197 1..159 813 100 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:20:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20948-PA 161 GM20948-PA 1..161 5..159 520 76.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:20:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10472-PA 171 GD10472-PA 1..171 1..159 529 74.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:20:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19123-PA 391 GE19123-PA 10..128 26..139 305 59.5 Plus