Clone IP04288 Report

Search the DGRC for IP04288

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:42
Well:88
Vector:pOT2
Associated Gene/TranscriptCG14342-RB
Protein status:IP04288.pep: gold
Preliminary Size:453
Sequenced Size:812

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14342 2005-01-01 Successful iPCR screen
CG14342 2008-04-29 Release 5.5 accounting
CG14342 2008-08-15 Release 5.9 accounting
CG14342 2008-12-18 5.12 accounting

Clone Sequence Records

IP04288.complete Sequence

812 bp (812 high quality bases) assembled on 2005-03-04

GenBank Submission: BT022940

> IP04288.complete
CGGTGAGCAAGTGGGCAAATCTGGATCTGGTATCTGGCTGAGTGGGGCCC
GGCATAAAACGGAAAACTTGTTAGGATGGATAAACTGCGAGGCAACAATG
CGGCTAGCGAGAATCCCTTCAAGCGGCCGATGAATGCCCTCCAGAAGCAG
TGGTACCGCGTCCTGCTGGCCCGCCGTGTGGGATTCGGGCAGCGTCCTCC
GCCCGACGAAAAGGAGCTAACGTACGCCGACATTTGTCGTAAGCGCTATG
CGGCATCGTTCCGGCGATACAACGAGTGTTTCCGCCGGGAAATGGCCAAA
CATGAGGAGATGCAGCGATGCGCCATCGACGCCATGAGGGTACACAGAAC
CTTTGCCATCACCACACTTTGGCTACCTTTGCACTCGAAGCGGGAAATCA
ACTCAACGCTGGAAACCCTCGAAAAGGTTCTCACCGCCAAGGAAAGACGA
CGCCTGCAGGAGATTCTCAAGCAGGGAGAGTCCTGGCACTCGCACCGCTA
AGGCTACATCCAAGATTCAGATCTTGATTCAGGCTCAGATTCAGATTCCG
AGCCTTACTCATCCCCGGCACATCAACATCATCATCATCATCAGCTGCCA
CGGCTAAGTGAATTCCATTTAGCTTGGATTTCAGTCTTCCAGGGAGCCTG
ATTTTCCTTCCCCGACTTCGTCTTTTTTTACTTTTCCATCGCTTTGTTCT
TGGAATTTCGCTGTCAGTGGCCAAAGCACTGTCGTAAATATTTAATACCA
GTAAAAGTGCAAAGTTCACTTTGGCTAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

IP04288.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:51:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG14342-RB 1002 CG14342-RB 106..885 1..780 3900 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:39:25
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 1204842..1205193 425..776 1745 99.7 Plus
chr2L 23010047 chr2L 1204184..1204407 1..224 1120 100 Plus
chr2L 23010047 chr2L 1204508..1204630 225..347 615 100 Plus
chr2L 23010047 chr2L 1204702..1204786 344..428 410 98.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:41:47 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:39:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1204899..1205254 425..780 1780 100 Plus
2L 23513712 2L 1204241..1204464 1..224 1120 100 Plus
2L 23513712 2L 1204565..1204687 225..347 615 100 Plus
2L 23513712 2L 1204759..1204843 344..428 425 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:40:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1204899..1205254 425..780 1780 100 Plus
2L 23513712 2L 1204241..1204464 1..224 1120 100 Plus
2L 23513712 2L 1204565..1204687 225..347 615 100 Plus
2L 23513712 2L 1204759..1204843 344..428 425 100 Plus
Blast to na_te.dros performed on 2019-03-16 14:39:23 has no hits.

IP04288.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:40:10 Download gff for IP04288.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 1204184..1204407 1..224 100 -> Plus
chr2L 1204508..1204630 225..347 100 -> Plus
chr2L 1204706..1204784 348..426 98 -> Plus
chr2L 1204844..1205193 427..776 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:23:39 Download gff for IP04288.complete
Subject Subject Range Query Range Percent Splice Strand
CG14342-RB 1..426 76..501 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:22:51 Download gff for IP04288.complete
Subject Subject Range Query Range Percent Splice Strand
CG14342-RB 1..426 76..501 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 15:33:08 Download gff for IP04288.complete
Subject Subject Range Query Range Percent Splice Strand
CG14342-RB 1..426 76..501 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:06:45 Download gff for IP04288.complete
Subject Subject Range Query Range Percent Splice Strand
CG14342-RB 1..426 76..501 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:30:28 Download gff for IP04288.complete
Subject Subject Range Query Range Percent Splice Strand
CG14342-RB 1..426 76..501 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:24:25 Download gff for IP04288.complete
Subject Subject Range Query Range Percent Splice Strand
CG14342-RB 1..776 1..776 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:22:51 Download gff for IP04288.complete
Subject Subject Range Query Range Percent Splice Strand
CG14342-RB 1..776 1..776 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:33:08 Download gff for IP04288.complete
Subject Subject Range Query Range Percent Splice Strand
CG14342-RB 27..802 1..776 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:06:45 Download gff for IP04288.complete
Subject Subject Range Query Range Percent Splice Strand
CG14342-RB 1..776 1..776 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:30:28 Download gff for IP04288.complete
Subject Subject Range Query Range Percent Splice Strand
CG14342-RB 27..802 1..776 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:40:10 Download gff for IP04288.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1204763..1204841 348..426 100 -> Plus
2L 1204241..1204464 1..224 100 -> Plus
2L 1204565..1204687 225..347 100 -> Plus
2L 1204901..1205250 427..776 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:40:10 Download gff for IP04288.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1204763..1204841 348..426 100 -> Plus
2L 1204241..1204464 1..224 100 -> Plus
2L 1204565..1204687 225..347 100 -> Plus
2L 1204901..1205250 427..776 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:40:10 Download gff for IP04288.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1204763..1204841 348..426 100 -> Plus
2L 1204241..1204464 1..224 100 -> Plus
2L 1204565..1204687 225..347 100 -> Plus
2L 1204901..1205250 427..776 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:33:08 Download gff for IP04288.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1204241..1204464 1..224 100 -> Plus
arm_2L 1204565..1204687 225..347 100 -> Plus
arm_2L 1204763..1204841 348..426 100 -> Plus
arm_2L 1204901..1205250 427..776 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:43:13 Download gff for IP04288.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1204241..1204464 1..224 100 -> Plus
2L 1204565..1204687 225..347 100 -> Plus
2L 1204763..1204841 348..426 100 -> Plus
2L 1204901..1205250 427..776 100   Plus

IP04288.pep Sequence

Translation from 75 to 500

> IP04288.pep
MDKLRGNNAASENPFKRPMNALQKQWYRVLLARRVGFGQRPPPDEKELTY
ADICRKRYAASFRRYNECFRREMAKHEEMQRCAIDAMRVHRTFAITTLWL
PLHSKREINSTLETLEKVLTAKERRRLQEILKQGESWHSHR*

IP04288.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:57:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15177-PA 141 GF15177-PA 1..141 1..141 688 90.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:57:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24781-PA 141 GG24781-PA 1..141 1..141 738 97.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:57:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10333-PA 156 GH10333-PA 25..150 11..136 580 86.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:59:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG14342-PB 141 CG14342-PB 1..141 1..141 749 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:57:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17092-PA 171 GI17092-PA 43..170 14..141 555 82.8 Plus
Dmoj\GI24116-PA 248 GI24116-PA 165..247 54..137 139 39.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:57:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15635-PA 141 GL15635-PA 1..136 1..136 669 91.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:57:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12922-PA 141 GA12922-PA 1..136 1..136 660 91.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:57:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16807-PA 159 GM16807-PA 1..91 1..91 493 97.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:57:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23088-PA 141 GD23088-PA 1..141 1..141 750 99.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:57:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10830-PA 160 GJ10830-PA 33..159 15..141 550 82.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:57:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14951-PA 140 GK14951-PA 5..140 6..141 601 82.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:57:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17484-PA 150 GE17484-PA 1..91 1..91 482 96.7 Plus

IP04288.hyp Sequence

Translation from 75 to 500

> IP04288.hyp
MDKLRGNNAASENPFKRPMNALQKQWYRVLLARRVGFGQRPPPDEKELTY
ADICRKRYAASFRRYNECFRREMAKHEEMQRCAIDAMRVHRTFAITTLWL
PLHSKREINSTLETLEKVLTAKERRRLQEILKQGESWHSHR*

IP04288.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:25:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG14342-PB 141 CG14342-PB 1..141 1..141 749 100 Plus