Clone IP04373 Report

Search the DGRC for IP04373

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:43
Well:73
Vector:pOT2
Associated Gene/TranscriptCG13999-RA
Protein status:IP04373.pep: gold
Preliminary Size:498
Sequenced Size:1043

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13999 2005-01-01 Successful iPCR screen
CG13999 2008-04-29 Release 5.5 accounting
CG13999 2008-08-15 Release 5.9 accounting
CG13999 2008-12-18 5.12 accounting

Clone Sequence Records

IP04373.complete Sequence

1043 bp (1043 high quality bases) assembled on 2005-03-04

GenBank Submission: BT022925.1

> IP04373.complete
AAAATACGTACCCATTTCTGTTCCCGCCAATGCCTTCCACACGTTTTCAA
AGTTTCACCAGTTCTCCATGGAAATCTGTCTATCGATAAGGGGATAGTAC
AAATCCACAGCGCATGACCGCAGTGGTAGCTTTGACGTCACCAGGACGAA
GGACACAACAAACCCCCGCACAGTCAGCACGCAACAAATTGACCGAAAAC
AAGCGCTTGACATTTGGACACCGCCATGAAGCTAACACTGCGACGCTACT
CCTGGGTGCTCCTGTTCCAGTTCGCCCTTTTGGGAGTGGACCTCTTTTGC
AACGCCTTTGGTCCTTCGCTGGCCAGAAACCGATTGCAGACAGCCATAAT
TCTCTTTGTCACTCAGGATGCCCTGATTATCGCGGAGTACCTGCTGTTCA
CCCTCGCCCTGCACTCGACGTGTGTGTACCAGGTCGGCGCCTCGCACATA
ATCCTGCGGAATTGCAAGCTCTTCATGGCCAGCATTACCATCTACTTCCT
TCTGTCCGCCTCCCAGCACTTTTGGATCATCTACCAATACCGTCAGCCGC
CAGAAGAGGACGGTCATCATTGGCCACTGGGTCTGATTGCCCTATCAGTG
GCACAGCGCATCATGTCGGTTTTCTATTACTACAGCTCCAAGTCGACGGC
TCTGACCATGGCAGATCCTCGCTTCAAGGAGGAGCATCTTGACTGGATCG
CAGATCAGCTGGGCGATAAGTAAGACACCTGGTTAAGTGGACTCTTCGAT
GAGTGAGTCAGCATAAGAAGTGTACTGTATATAGATAATTAATAGAAATA
GATAATAGTTTATAAAGACATCCGATTTAAAACAGAAATGAAAAACCTCT
ATGCCGAAATTATCAAGTAGATAGCACTAACAGATAAGTCGAAAATAAAT
CCGACCGAGTTTAAATGCATATAACATTTATAACTCACGTGTGAATATTA
TTTAATTAGCAAACAAAATTCCTTGACAATATTGTAGTTCTTTTGTTTCC
AATAATATTATTCATGTGTAAATAGAAAAAAAAAAAAAAAAAA

IP04373.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:51:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG13999-RA 1140 CG13999-RA 64..1090 1..1027 5135 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:40:55
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 5954363..5954774 1025..614 2060 100 Minus
chr2L 23010047 chr2L 5955143..5955501 359..1 1795 100 Minus
chr2L 23010047 chr2L 5954832..5955085 613..360 1270 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:42:03 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:40:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5955310..5955723 1027..614 2070 100 Minus
2L 23513712 2L 5956092..5956450 359..1 1795 100 Minus
2L 23513712 2L 5955781..5956034 613..360 1270 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:40:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5955310..5955723 1027..614 2070 100 Minus
2L 23513712 2L 5956092..5956450 359..1 1795 100 Minus
2L 23513712 2L 5955781..5956034 613..360 1270 100 Minus
Blast to na_te.dros performed on 2019-03-15 12:40:53 has no hits.

IP04373.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:42:00 Download gff for IP04373.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 5955143..5955501 1..359 100   Minus
chr2L 5954363..5954774 614..1025 100 <- Minus
chr2L 5954832..5955085 360..613 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:23:51 Download gff for IP04373.complete
Subject Subject Range Query Range Percent Splice Strand
CG13999-RA 1..498 226..723 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:22:38 Download gff for IP04373.complete
Subject Subject Range Query Range Percent Splice Strand
CG13999-RA 1..498 226..723 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:48:14 Download gff for IP04373.complete
Subject Subject Range Query Range Percent Splice Strand
CG13999-RA 1..498 226..723 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:06:32 Download gff for IP04373.complete
Subject Subject Range Query Range Percent Splice Strand
CG13999-RA 1..498 226..723 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:07:17 Download gff for IP04373.complete
Subject Subject Range Query Range Percent Splice Strand
CG13999-RA 1..498 226..723 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:24:08 Download gff for IP04373.complete
Subject Subject Range Query Range Percent Splice Strand
CG13999-RA 1..1025 1..1025 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:22:38 Download gff for IP04373.complete
Subject Subject Range Query Range Percent Splice Strand
CG13999-RA 17..1041 1..1025 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:48:14 Download gff for IP04373.complete
Subject Subject Range Query Range Percent Splice Strand
CG13999-RA 17..1041 1..1025 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:06:33 Download gff for IP04373.complete
Subject Subject Range Query Range Percent Splice Strand
CG13999-RA 1..1025 1..1025 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:07:17 Download gff for IP04373.complete
Subject Subject Range Query Range Percent Splice Strand
CG13999-RA 17..1041 1..1025 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:42:00 Download gff for IP04373.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5955312..5955723 614..1025 100 <- Minus
2L 5955781..5956034 360..613 100 <- Minus
2L 5956092..5956450 1..359 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:42:00 Download gff for IP04373.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5955312..5955723 614..1025 100 <- Minus
2L 5955781..5956034 360..613 100 <- Minus
2L 5956092..5956450 1..359 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:42:00 Download gff for IP04373.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5955312..5955723 614..1025 100 <- Minus
2L 5955781..5956034 360..613 100 <- Minus
2L 5956092..5956450 1..359 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:48:14 Download gff for IP04373.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5956092..5956450 1..359 100   Minus
arm_2L 5955312..5955723 614..1025 100 <- Minus
arm_2L 5955781..5956034 360..613 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:43:00 Download gff for IP04373.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5955312..5955723 614..1025 100 <- Minus
2L 5955781..5956034 360..613 100 <- Minus
2L 5956092..5956450 1..359 100   Minus

IP04373.hyp Sequence

Translation from 113 to 691

> IP04373.hyp
MTAVVALTSPGRRTQQTPAQSARNKLTENKRLTFGHRHEANTATLLLGAP
VPVRPFGSGPLLQRLWSFAGQKPIADSHNSLCHSGCPDYRGVPAVHPRPA
LDVCVPGRRLAHNPAELQALHGQHYHLLPSVRLPALLDHLPIPSAARRGR
SSLATGSDCPISGTAHHVGFLLLQLQVDGSDHGRSSLQGGAS*
Sequence IP04373.hyp has no blast hits.

IP04373.pep Sequence

Translation from 225 to 722

> IP04373.pep
MKLTLRRYSWVLLFQFALLGVDLFCNAFGPSLARNRLQTAIILFVTQDAL
IIAEYLLFTLALHSTCVYQVGASHIILRNCKLFMASITIYFLLSASQHFW
IIYQYRQPPEEDGHHWPLGLIALSVAQRIMSVFYYYSSKSTALTMADPRF
KEEHLDWIADQLGDK*

IP04373.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 10:54:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14295-PA 165 GF14295-PA 1..165 1..165 712 80 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 10:54:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24272-PA 165 GG24272-PA 1..165 1..165 838 95.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 10:54:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10723-PA 165 GH10723-PA 1..165 1..165 607 73.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:18:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG13999-PA 165 CG13999-PA 1..165 1..165 862 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 10:54:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11360-PA 165 GI11360-PA 1..165 1..165 653 73.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 10:54:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19102-PA 166 GL19102-PA 1..166 1..165 671 78.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 10:54:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12688-PA 166 GA12688-PA 1..166 1..165 671 78.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 10:54:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17986-PA 165 GM17986-PA 1..165 1..165 871 99.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 10:54:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22623-PA 165 GD22623-PA 1..165 1..165 859 98.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 10:54:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12624-PA 165 GJ12624-PA 1..165 1..165 623 75.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 10:54:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15412-PA 165 GK15412-PA 1..165 1..165 649 77.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 10:54:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18969-PA 165 GE18969-PA 1..165 1..165 875 100 Plus