Clone IP04375 Report

Search the DGRC for IP04375

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:43
Well:75
Vector:pOT2
Associated Gene/TranscriptCG14057-RB
Protein status:IP04375.pep: gold
Preliminary Size:438
Sequenced Size:539

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14057 2005-01-01 Successful iPCR screen
CG14057 2008-04-29 Release 5.5 accounting
CG14057 2008-08-15 Release 5.9 accounting
CG14057 2008-12-18 5.12 accounting

Clone Sequence Records

IP04375.complete Sequence

539 bp (539 high quality bases) assembled on 2005-03-04

GenBank Submission: BT022920

> IP04375.complete
AGAATAGGTATATAGCGGTGCAGATTGTGCCCTACACGCCAACACAATCT
CTGCGACTCAACGACCACAGCCTGACCAAGATCCTGCTTCAGAATGTGGA
GAAGTATTACGGAGTCTATGGCCTCGCCGTGATCGAGCAGGGATTTCGAG
TGAAATACATCAACGATCGCACGAAAATGGCAATCATACGCTGTCTCCAT
CGAGGCCAACGCTTCGTGTCCAGCGTATTGCCATTGATTACTTTGATCGG
AGATGTACGGGCCAAGTTTAGGACGCTGTACATTGGTGCCACCATCATCC
AATGCAACAAGTTCATAGTCAAGCACCAAAAACAGTTCCTGGACCGCACC
ATGGGTCAGATAACCTCCGCCAAGGAGCGCCAGGATCTCTTCAAGCGCGT
AATGGAGTTCGACATGGACAGATAGCACATAGTTTGTTTAGAATGTAATT
AAGTAATTATATTTAATGGTTTTCTTATAGAAAACCCATGCTTCCAATTC
AACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

IP04375.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:51:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG14057-RA 744 CG14057-RA 154..661 1..508 2540 100 Plus
CG14057-RB 686 CG14057-RB 101..603 6..508 2515 100 Plus
Papst2-RA 1737 Papst2-RA 1593..1737 508..364 725 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:29:18
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 17033865..17034124 504..245 1300 100 Minus
chr3L 24539361 chr3L 17034177..17034416 245..6 1200 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:42:03 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:29:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17044397..17044660 508..245 1320 100 Minus
3L 28110227 3L 17044713..17044952 245..6 1200 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:40:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 17037497..17037760 508..245 1320 100 Minus
3L 28103327 3L 17037813..17038052 245..6 1200 100 Minus
Blast to na_te.dros performed on 2019-03-15 20:29:16 has no hits.

IP04375.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:30:24 Download gff for IP04375.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 17033865..17034123 246..504 100 <- Minus
chr3L 17034177..17034420 1..245 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:23:52 Download gff for IP04375.complete
Subject Subject Range Query Range Percent Splice Strand
CG14057-RA 14..438 1..425 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:22:40 Download gff for IP04375.complete
Subject Subject Range Query Range Percent Splice Strand
CG14057-RA 14..438 1..425 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:08:00 Download gff for IP04375.complete
Subject Subject Range Query Range Percent Splice Strand
CG14057-RA 14..438 1..425 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:06:35 Download gff for IP04375.complete
Subject Subject Range Query Range Percent Splice Strand
CG14057-RA 14..438 1..425 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:37:08 Download gff for IP04375.complete
Subject Subject Range Query Range Percent Splice Strand
CG14057-RA 14..438 1..425 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:24:10 Download gff for IP04375.complete
Subject Subject Range Query Range Percent Splice Strand
CG14057-RA 14..438 1..425 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:22:39 Download gff for IP04375.complete
Subject Subject Range Query Range Percent Splice Strand
CG14057-RA 28..531 1..504 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:08:00 Download gff for IP04375.complete
Subject Subject Range Query Range Percent Splice Strand
CG14057-RA 27..530 1..504 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:06:36 Download gff for IP04375.complete
Subject Subject Range Query Range Percent Splice Strand
CG14057-RA 14..438 1..425 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:37:08 Download gff for IP04375.complete
Subject Subject Range Query Range Percent Splice Strand
CG14057-RA 27..530 1..504 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:30:24 Download gff for IP04375.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17044401..17044659 246..504 100 <- Minus
3L 17044713..17044956 1..245 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:30:24 Download gff for IP04375.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17044401..17044659 246..504 100 <- Minus
3L 17044713..17044956 1..245 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:30:24 Download gff for IP04375.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17044401..17044659 246..504 100 <- Minus
3L 17044713..17044956 1..245 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:08:00 Download gff for IP04375.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17037501..17037759 246..504 100 <- Minus
arm_3L 17037813..17038056 1..245 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:43:02 Download gff for IP04375.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17037501..17037759 246..504 100 <- Minus
3L 17037813..17038056 1..245 99   Minus

IP04375.pep Sequence

Translation from 2 to 424

> IP04375.pep
NRYIAVQIVPYTPTQSLRLNDHSLTKILLQNVEKYYGVYGLAVIEQGFRV
KYINDRTKMAIIRCLHRGQRFVSSVLPLITLIGDVRAKFRTLYIGATIIQ
CNKFIVKHQKQFLDRTMGQITSAKERQDLFKRVMEFDMDR*

IP04375.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:55:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24402-PA 145 GF24402-PA 6..145 1..140 666 86.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:55:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15831-PA 145 GG15831-PA 6..145 1..140 697 92.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:55:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15009-PA 145 GH15009-PA 6..145 1..140 647 82.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:48:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG14057-PA 145 CG14057-PA 6..145 1..140 714 100 Plus
CG14057-PB 82 CG14057-PB 1..82 59..140 416 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:55:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13171-PA 145 GI13171-PA 6..145 1..140 652 83.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:55:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16062-PA 148 GL16062-PA 10..148 2..140 671 89.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:55:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12728-PA 145 GA12728-PA 6..145 1..140 677 89.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:55:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24350-PA 145 GM24350-PA 6..145 1..140 718 97.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:55:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12427-PA 145 GD12427-PA 6..145 1..140 721 97.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:55:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11947-PA 145 GJ11947-PA 6..145 1..140 658 85 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:55:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20429-PA 145 GK20429-PA 6..145 1..140 613 79.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:55:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22171-PA 145 GE22171-PA 6..145 1..140 709 95 Plus

IP04375.hyp Sequence

Translation from 2 to 424

> IP04375.hyp
NRYIAVQIVPYTPTQSLRLNDHSLTKILLQNVEKYYGVYGLAVIEQGFRV
KYINDRTKMAIIRCLHRGQRFVSSVLPLITLIGDVRAKFRTLYIGATIIQ
CNKFIVKHQKQFLDRTMGQITSAKERQDLFKRVMEFDMDR*

IP04375.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:26:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG14057-PA 145 CG14057-PA 6..145 1..140 714 100 Plus
CG14057-PB 82 CG14057-PB 1..82 59..140 416 100 Plus