Clone IP04471 Report

Search the DGRC for IP04471

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:44
Well:71
Vector:pOT2
Associated Gene/TranscriptCG30096-RB
Protein status:IP04471.pep: gold
Preliminary Size:438
Sequenced Size:1101

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG30096 2005-01-01 Successful iPCR screen
CG30096 2008-04-29 Release 5.5 accounting
CG30096 2008-08-15 Release 5.9 accounting
CG30096 2008-12-18 5.12 accounting

Clone Sequence Records

IP04471.complete Sequence

1101 bp (1101 high quality bases) assembled on 2005-03-04

GenBank Submission: BT022349

> IP04471.complete
AAAATGACCTGCTAATGCAGTGGGATTGAGTGATTCCATCATAAATTATC
AAAGAAAACCATTCTTAATCAATACAATACAACGACAGGAATATACGAAT
TCCAGAATGTCGGATTTGGGGAAAGATGTGGCGAGCGAAGAAGGCTCCAA
TGGAAGCAGGGAAACCATTTGGTACACCATTGGAGAGCTTGTGGAAATGG
TCGAGTGTCCAGGTTGTGGAATATCCATGGTATCGTTCAAAAATCGCTTC
GCCCACATCAAGAAGTGCTTCAGCATCAAGAGACGAGGTCCTTTGTACAG
GATTTATGGATATGCGGAGTGCAAGTGCGGCTTTCTTATTGCAGACACGG
AAAAAGCCCGGAAACTGCATTGTTGTTCGGGAAAACTTCGCCCCTGCAAG
CCAATCATACCAACTGAGCCGAAAGTCCCGGTGACAAAACATGCTGAAGA
ACTAACATCAACTAAAAGGGAACAGGCTTTGCAGCCGTTGATTAGAAATT
TTATCAGTCCCATCAAACAACAGGAGTTTCCATCTTTGGATATATCATAT
TCCAGTAAATATGATCCTAAACCAACATCGAGGCCACGCGTCCGTAACTT
TGATAGACCACACAGAAGTCAAGCTCCAAAGGAAGTCTGTGTGTACTCCA
TAATTCGGAGGAATGGGGCTATCTCAGTGACAGGAAGATCCATCGTTAGG
TACCGGGGTGGCAACGAAAACCTTGCCATACTTAAAAGGCGAGAATTAAA
AATAAAATACGTATAACATAGTTATGTATAAGTAAACTAAGCTGTAGATA
AGTCTGAATATTATGAAAGTAAATGTTGTCTCTTGTATTTATTAAGTTAC
ATTTAATATTTTGCCTTTATTCAATCTTACCGATTGATGATAAGGCATCT
ATAAGTAATTTTCTTGATTAATGTAAACAAAAATAATTAATTTTGTAAAT
CAAAAGTTTTTTAAACACCAGCGTATAATGGTGTGTATTTAATGGTTAAA
AGAAAAAAAGTGATAAGAAAGAAGTAGTGTAATATAAAAAGTATAAATGA
AATTATATAAAGATAGCTATAAATTATGAAAAAAAAAAAAAAAAAAAAAA
A

IP04471.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:51:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG30096-RB 1146 CG30096-RB 69..1146 1..1078 5375 99.9 Plus
CG30096.a 1017 CG30096.a 28..1017 89..1078 4950 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:45:36
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 12208133..12208832 1078..379 3390 99.6 Minus
chr2R 21145070 chr2R 12208883..12209137 384..130 1260 99.6 Minus
chr2R 21145070 chr2R 12209302..12209390 89..1 430 98.9 Minus
chr2R 21145070 chr2R 12209190..12209232 131..89 215 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:42:23 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:45:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16320811..16321514 1082..379 3520 100 Minus
2R 25286936 2R 16321565..16321819 384..130 1260 99.6 Minus
2R 25286936 2R 16321984..16322072 89..1 430 98.9 Minus
2R 25286936 2R 16321872..16321914 131..89 215 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:40:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 16322010..16322713 1082..379 3520 100 Minus
2R 25260384 2R 16322764..16323018 384..130 1260 99.6 Minus
2R 25260384 2R 16323183..16323271 89..1 430 98.8 Minus
2R 25260384 2R 16323071..16323113 131..89 215 100 Minus
Blast to na_te.dros performed 2019-03-15 12:45:34
Subject Length Description Subject Range Query Range Score Percent Strand
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 813..983 960..803 147 61 Minus

IP04471.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:46:16 Download gff for IP04471.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 12208133..12208831 380..1078 99 <- Minus
chr2R 12208888..12209136 131..379 100 <- Minus
chr2R 12209191..12209231 90..130 100 <- Minus
chr2R 12209302..12209390 1..89 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:24:07 Download gff for IP04471.complete
Subject Subject Range Query Range Percent Splice Strand
CG30096-RB 1..660 107..766 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:22:30 Download gff for IP04471.complete
Subject Subject Range Query Range Percent Splice Strand
CG30096-RB 1..660 107..766 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:49:42 Download gff for IP04471.complete
Subject Subject Range Query Range Percent Splice Strand
CG30096-RB 1..660 107..766 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:06:23 Download gff for IP04471.complete
Subject Subject Range Query Range Percent Splice Strand
CG30096-RB 1..660 107..766 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:09:34 Download gff for IP04471.complete
Subject Subject Range Query Range Percent Splice Strand
CG30096-RB 1..660 107..766 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:23:53 Download gff for IP04471.complete
Subject Subject Range Query Range Percent Splice Strand
CG30096-RB 1..1078 1..1078 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:22:29 Download gff for IP04471.complete
Subject Subject Range Query Range Percent Splice Strand
CG30096-RB 1..1078 1..1078 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:49:42 Download gff for IP04471.complete
Subject Subject Range Query Range Percent Splice Strand
CG30096-RB 53..1130 1..1078 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:06:23 Download gff for IP04471.complete
Subject Subject Range Query Range Percent Splice Strand
CG30096-RB 39..1116 1..1078 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:09:34 Download gff for IP04471.complete
Subject Subject Range Query Range Percent Splice Strand
CG30096-RB 53..1130 1..1078 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:46:16 Download gff for IP04471.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16320815..16321513 380..1078 100 <- Minus
2R 16321570..16321818 131..379 100 <- Minus
2R 16321873..16321913 90..130 100 <- Minus
2R 16321984..16322072 1..89 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:46:16 Download gff for IP04471.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16320815..16321513 380..1078 100 <- Minus
2R 16321570..16321818 131..379 100 <- Minus
2R 16321873..16321913 90..130 100 <- Minus
2R 16321984..16322072 1..89 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:46:16 Download gff for IP04471.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16320815..16321513 380..1078 100 <- Minus
2R 16321570..16321818 131..379 100 <- Minus
2R 16321873..16321913 90..130 100 <- Minus
2R 16321984..16322072 1..89 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:49:42 Download gff for IP04471.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12208320..12209018 380..1078 100 <- Minus
arm_2R 12209075..12209323 131..379 100 <- Minus
arm_2R 12209378..12209418 90..130 100 <- Minus
arm_2R 12209489..12209577 1..89 98   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:42:51 Download gff for IP04471.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16322014..16322712 380..1078 100 <- Minus
2R 16322769..16323017 131..379 100 <- Minus
2R 16323072..16323112 90..130 100 <- Minus
2R 16323183..16323271 1..89 98   Minus

IP04471.pep Sequence

Translation from 106 to 765

> IP04471.pep
MSDLGKDVASEEGSNGSRETIWYTIGELVEMVECPGCGISMVSFKNRFAH
IKKCFSIKRRGPLYRIYGYAECKCGFLIADTEKARKLHCCSGKLRPCKPI
IPTEPKVPVTKHAEELTSTKREQALQPLIRNFISPIKQQEFPSLDISYSS
KYDPKPTSRPRVRNFDRPHRSQAPKEVCVYSIIRRNGAISVTGRSIVRYR
GGNENLAILKRRELKIKYV*

IP04471.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:54:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19767-PA 63 GF19767-PA 1..50 41..90 206 72 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:54:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22274-PA 100 GG22274-PA 4..89 6..91 436 94.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:54:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21924-PA 208 GH21924-PA 20..199 18..216 376 41.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:27:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG30096-PB 219 CG30096-PB 1..219 1..219 1158 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:54:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19630-PA 246 GI19630-PA 19..237 17..216 391 39.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:54:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11350-PA 255 GL11350-PA 26..235 11..205 465 47.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:55:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15646-PA 255 GA15646-PA 26..235 11..205 459 46.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:55:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20064-PA 102 GM20064-PA 1..93 1..93 492 97.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:55:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25546-PA 102 GD25546-PA 1..91 1..91 492 98.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:55:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21693-PA 204 GK21693-PA 15..196 9..216 295 35 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:55:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14070-PA 145 GE14070-PA 1..91 1..91 443 90.1 Plus

IP04471.hyp Sequence

Translation from 106 to 765

> IP04471.hyp
MSDLGKDVASEEGSNGSRETIWYTIGELVEMVECPGCGISMVSFKNRFAH
IKKCFSIKRRGPLYRIYGYAECKCGFLIADTEKARKLHCCSGKLRPCKPI
IPTEPKVPVTKHAEELTSTKREQALQPLIRNFISPIKQQEFPSLDISYSS
KYDPKPTSRPRVRNFDRPHRSQAPKEVCVYSIIRRNGAISVTGRSIVRYR
GGNENLAILKRRELKIKYV*

IP04471.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:27:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG30096-PB 219 CG30096-PB 1..219 1..219 1158 100 Plus