Clone IP04719 Report

Search the DGRC for IP04719

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:47
Well:19
Vector:pOT2
Associated Gene/TranscriptCG15059-RB
Protein status:IP04719.pep: gold
Preliminary Size:560
Sequenced Size:868

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15059 2005-01-01 Successful iPCR screen
CG15059 2008-08-15 Release 5.9 accounting
CG15059 2008-12-18 5.12 accounting

Clone Sequence Records

IP04719.complete Sequence

868 bp (849 high quality bases) assembled on 2008-12-09

GenBank Submission: BT023661.2

> IP04719.complete
AGCCCCACAACTATTGTGATTTTTTTTTTTTTTTTAAGACAACACATTCC
CCATCTCGTTGCAATAGAATGCCAAATTCGTCAGTAATCAGCAGGGTGAA
CGCGGGATTGGCTCGCTGTTTGAGCCACCATCGGCGATTGTGTCGCGGCA
TTGCCGAGCTGGACCGGCTCATCCACAACGATGAGTTCTTGAAGGATCCC
AGGACGCAGTGGCTGCTCCATCAGCGGCGTCAAACCGAGGAGGAGCAGGC
AAATGCAGATGCTAGGATCAGTCCGTTGGGCAGAATGGGTTGTGAAATGG
GTCGTCTGCTGGGTAGGTCCAAGATAAATCTGTCCCCGCAATCCCGAAAG
AACAATCTCGTCGTGACCCGGACCTTTTGCCAAATCCTCCAAGTTGAAAA
CTCCACACCCAGAAAGCAGTCGGGACCAATGCCTGCTCCAACTCCACTGC
CATCGCCAGAAAGAAGGCAGAGTCTCATCTTCAGCGCTAGCCTGTCTCGT
CCTGAGCCGTAAGGATCCTGCTCCAAGATCAGTCAAAGTAGTTAGGCATG
ATATCCTGTAGAGATACACTACCAAGCCTGGCAGAGATCTACGATATGTA
TAGATAGATCAGTGCAAGGCTTGGTAGGGTTCTCTTTGAGATGTCTCTGT
GGAAATAGCCCAGAAACGACTGAATTTATATCCCACACAACTGAAGGGGC
AGCAGGAGGATGTGGACTACCAGGAGGAAGAGGAGGAGGTGTTGCCCCGT
CCGTCGTTCAGTATCCGTGCTGCTCTCGTTATTGTTATGAATAAGTTAAT
AACATGGCGGAAGGCTTCTTTTGTCGTGGCCCAAACAAGCAAAAAAAAAA
AAAAAAAAAAAAAAAAAA

IP04719.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:14:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG15059.b 1263 CG15059.b 310..1152 1..842 4175 99.8 Plus
CG15059.a 1029 CG15059.a 76..918 1..842 4175 99.8 Plus
CG15059-RB 696 CG15059-RB 76..696 1..620 3065 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:05:40
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 18147748..18148239 840..349 2460 100 Minus
chrX 22417052 chrX 18148296..18148646 350..1 1660 98.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:43:36 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:05:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18258612..18259105 842..349 2470 100 Minus
X 23542271 X 18259167..18259517 350..1 1705 99.7 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:32:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 18266710..18267203 842..349 2470 100 Minus
X 23527363 X 18267265..18267615 350..1 1715 99.7 Minus
Blast to na_te.dros performed on 2019-03-16 10:05:39 has no hits.

IP04719.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:06:34 Download gff for IP04719.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 18147748..18148237 351..840 100 <- Minus
chrX 18148296..18148646 1..350 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:03:45 Download gff for IP04719.complete
Subject Subject Range Query Range Percent Splice Strand
CG15059-RB 1..444 69..512 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:21:35 Download gff for IP04719.complete
Subject Subject Range Query Range Percent Splice Strand
CG15059-RB 1..444 69..512 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:11:54 Download gff for IP04719.complete
Subject Subject Range Query Range Percent Splice Strand
CG15059-RB 1..444 69..512 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 17:00:11 has no hits.
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:55:02 Download gff for IP04719.complete
Subject Subject Range Query Range Percent Splice Strand
CG15059-RB 1..444 69..512 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-09 11:32:38 Download gff for IP04719.complete
Subject Subject Range Query Range Percent Splice Strand
CG15059-RB 1..560 61..620 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:21:35 Download gff for IP04719.complete
Subject Subject Range Query Range Percent Splice Strand
CG15059-RB 1..560 61..620 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:11:54 Download gff for IP04719.complete
Subject Subject Range Query Range Percent Splice Strand
CG15059-RB 1..560 61..620 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:00:11 Download gff for IP04719.complete
Subject Subject Range Query Range Percent Splice Strand
CG15059-RB 1..560 249..808 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:55:02 Download gff for IP04719.complete
Subject Subject Range Query Range Percent Splice Strand
CG15059-RB 1..841 1..840 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:06:34 Download gff for IP04719.complete
Subject Subject Range Query Range Percent Splice Strand
X 18258614..18259103 351..840 100 <- Minus
X 18259167..18259517 1..350 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:06:34 Download gff for IP04719.complete
Subject Subject Range Query Range Percent Splice Strand
X 18258614..18259103 351..840 100 <- Minus
X 18259167..18259517 1..350 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:06:34 Download gff for IP04719.complete
Subject Subject Range Query Range Percent Splice Strand
X 18258614..18259103 351..840 100 <- Minus
X 18259167..18259517 1..350 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:11:54 Download gff for IP04719.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 18152647..18153136 351..840 100 <- Minus
arm_X 18153200..18153550 1..350 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:53:13 Download gff for IP04719.complete
Subject Subject Range Query Range Percent Splice Strand
X 18266712..18267201 351..840 100 <- Minus
X 18267265..18267615 1..350 99   Minus

IP04719.hyp Sequence

Translation from 0 to 511

> IP04719.hyp
SPTTIVIFFFFFKTTHSPSRCNRMPNSSVISRVNAGLARCLSHHRRLCRG
IAELDRLIHNDEFLKDPRTQWLLHQRRQTEEEQANADARISPLGRMGCEM
GRLLGRSKINLSPQSRKNNLVVTRTFCQILQVENSTPRKQSGPMPAPTPL
PSPERRQSLIFSASLSRPEP*

IP04719.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:30:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG15059-PC 147 CG15059-PC 1..147 24..170 765 100 Plus
CG15059-PB 147 CG15059-PB 1..147 24..170 765 100 Plus

IP04719.pep Sequence

Translation from 2 to 511

> IP04719.pep
PHNYCDFFFFFKTTHSPSRCNRMPNSSVISRVNAGLARCLSHHRRLCRGI
AELDRLIHNDEFLKDPRTQWLLHQRRQTEEEQANADARISPLGRMGCEMG
RLLGRSKINLSPQSRKNNLVVTRTFCQILQVENSTPRKQSGPMPAPTPLP
SPERRQSLIFSASLSRPEP*

IP04719.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:09:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22518-PA 172 GF22518-PA 1..142 23..154 257 47.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:09:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18136-PA 155 GG18136-PA 1..141 23..161 618 84.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:39:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG15059-PC 147 CG15059-PC 1..147 23..169 765 100 Plus
CG15059-PB 147 CG15059-PB 1..147 23..169 765 100 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:09:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22828-PA 145 GM22828-PA 1..145 23..167 733 95.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:09:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24478-PA 145 GD24478-PA 1..145 23..167 718 93.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:09:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15546-PA 159 GE15546-PA 1..146 23..168 670 87.7 Plus