Clone IP04909 Report

Search the DGRC for IP04909

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:49
Well:9
Vector:pOT2
Associated Gene/Transcriptrn-RD
Protein status:IP04909.pep: wuzgold
Preliminary Size:456
Sequenced Size:1198

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG32467 2005-01-01 Successful iPCR screen
rn 2008-04-29 Release 5.5 accounting
rn 2008-08-15 Release 5.9 accounting
rn 2008-12-18 5.12 accounting

Clone Sequence Records

IP04909.complete Sequence

1198 bp (1198 high quality bases) assembled on 2006-01-26

GenBank Submission: BT024401

> IP04909.complete
TCGAGCTGGAGGAGTAAAAAAAAGGGCTGCCTACATCTGGGCTCCACCGA
AGTTGGTTGTCATGCACGAACTCATTGGCAAATACAGCCATTCGGACATG
GACATGCTGAAGGATCAGCTGAAGCGTGGGGGCTACATGGGCGCCCTTGG
TCCGCCCACGCCCGGCACATCCGCCCCCTCGCCCTTCCTGATGCCCGCCG
AATTCTACAAAAGCCTGCTCGCCAGCGCCGTTCTGCAACAGCAACAGCAG
CACAAGTTCTACGCCGGCACGCCCTCACCCAGTCCCGCCCCCAGTTTGTC
ACCCACCTCAGGTCGCCACTTGCTGTTTTCCACGGCAGCTGCGGCAACCG
CTTGTGCTCCGGAGAATGGTCACGTGAAGACGGAGCTCGAAGAGCAGGAC
CAGCAGAACGGGATGCCGGAAACCGTCGGACATGAGGAGCAGAAACCCAT
CATCGAAGAGAACCCAACGCCGAATAAGCCGCACAACAACAACGGTTACT
CGTGGTCCACCGGCAACAACAACGAGGTTGTCAGTCATAGCAGCAACGGC
CACACCAACAACCACCCAACAACACCACCCACTCCGCCCAACGAGGCCAG
CGCCACCCAAGCGACTTCAGTGTCCGCAATTAATTTGAATCAAGCCCAAC
CCGCATCACAGACGCGTTCAAACTTTGGCAGCTCCATAAAGTCACCACCA
TCAGAACCGGACGCGGTCACTGCTGCCACGTGCAAAAGTCAGGAGAATAA
CTCCGGCCAGAACCCCACCCCCAACTCCCTCTCCGATCACAACCCGGCTC
ACAACCTTAACTCGAATTCAACGGCCGCTGCCGTGGCCGCCGCTGCCGCC
GCCGCCGCCGCTGCCAACATGCCGATCGGCGGCGTCCAGGGTCAGAATCC
CACCCAGGGCCTGGTCCACTGGATGAGTGCCGTGATGGCCGAGCACATGA
CCGGCCAGACGCACCACGATCCTGGCGCCGTAGGCATGCACTACATGTGG
AACGGGAACGTTGACGTGAGTATCAACTGGATAACTGGATTCACGGGGGC
GGGCAAAATTCGTGGGGCTTGTTAATTTTAGCCACACTTTGAAAAATCCA
AAGAGACAGCCTATACCGAATTATTACCACAGGACTTAACTTACTCCGTC
TAAGTAAATTTGCCATGCTCTTTAAAAAAAAAAAAAAAAAAAAAAAAA

IP04909.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:19:29
Subject Length Description Subject Range Query Range Score Percent Strand
rn-RD 1174 rn-RD 1..1174 1..1174 5870 100 Plus
rn-RF 3225 rn-RF 77..1091 1..1015 5075 100 Plus
rn.c 3872 rn.c 77..1091 1..1015 5075 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:15:49
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 3126578..3127275 1173..476 3490 100 Minus
chr3R 27901430 chr3R 3127858..3128332 475..1 2375 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:44:08 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:15:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7300478..7301176 1174..476 3495 100 Minus
3R 32079331 3R 7301759..7302233 475..1 2375 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:12:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 7041309..7042007 1174..476 3495 100 Minus
3R 31820162 3R 7042590..7043064 475..1 2375 100 Minus
Blast to na_te.dros performed 2019-03-16 06:15:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2406 484..582 128 60 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1517..1589 510..581 119 64.4 Plus

IP04909.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:16:52 Download gff for IP04909.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 3126578..3127275 476..1173 100 <- Minus
chr3R 3127858..3128332 1..475 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:25:39 Download gff for IP04909.complete
Subject Subject Range Query Range Percent Splice Strand
rn-RD 1..1014 62..1075 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:34:19 Download gff for IP04909.complete
Subject Subject Range Query Range Percent Splice Strand
rn-RD 1..1014 62..1075 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:39:32 Download gff for IP04909.complete
Subject Subject Range Query Range Percent Splice Strand
rn-RF 1..954 62..1015 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:08:26 Download gff for IP04909.complete
Subject Subject Range Query Range Percent Splice Strand
rn-RD 1..1014 62..1075 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:15:45 Download gff for IP04909.complete
Subject Subject Range Query Range Percent Splice Strand
rn-RF 1..954 62..1015 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:05:36 Download gff for IP04909.complete
Subject Subject Range Query Range Percent Splice Strand
rn-RD 1..1173 1..1173 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:34:18 Download gff for IP04909.complete
Subject Subject Range Query Range Percent Splice Strand
rn-RD 1..1173 1..1173 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:39:32 Download gff for IP04909.complete
Subject Subject Range Query Range Percent Splice Strand
rn-RF 1..1015 1..1015 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:08:26 Download gff for IP04909.complete
Subject Subject Range Query Range Percent Splice Strand
rn-RD 1..1173 1..1173 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:15:45 Download gff for IP04909.complete
Subject Subject Range Query Range Percent Splice Strand
rn-RF 1..1015 1..1015 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:16:52 Download gff for IP04909.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7300479..7301176 476..1173 100 <- Minus
3R 7301759..7302233 1..475 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:16:52 Download gff for IP04909.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7300479..7301176 476..1173 100 <- Minus
3R 7301759..7302233 1..475 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:16:52 Download gff for IP04909.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7300479..7301176 476..1173 100 <- Minus
3R 7301759..7302233 1..475 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:39:32 Download gff for IP04909.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3126201..3126898 476..1173 100 <- Minus
arm_3R 3127481..3127955 1..475 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:58:24 Download gff for IP04909.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7041310..7042007 476..1173 100 <- Minus
3R 7042590..7043064 1..475 100   Minus

IP04909.hyp Sequence

Translation from 0 to 1074

> IP04909.hyp
RAGGVKKRAAYIWAPPKLVVMHELIGKYSHSDMDMLKDQLKRGGYMGALG
PPTPGTSAPSPFLMPAEFYKSLLASAVLQQQQQHKFYAGTPSPSPAPSLS
PTSGRHLLFSTAAAATACAPENGHVKTELEEQDQQNGMPETVGHEEQKPI
IEENPTPNKPHNNNGYSWSTGNNNEVVSHSSNGHTNNHPTTPPTPPNEAS
ATQATSVSAINLNQAQPASQTRSNFGSSIKSPPSEPDAVTAATCKSQENN
SGQNPTPNSLSDHNPAHNLNSNSTAAAVAAAAAAAAAANMPIGGVQGQNP
TQGLVHWMSAVMAEHMTGQTHHDPGAVGMHYMWNGNVDVSINWITGFTGA
GKIRGAC*

IP04909.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:31:54
Subject Length Description Subject Range Query Range Score Percent Strand
rn-PF 927 CG42277-PF 1..318 21..338 1702 100 Plus
rn-PE 946 CG42277-PE 48..337 44..338 975 66.7 Plus
rn-PG 952 CG42277-PG 48..337 44..338 975 66.7 Plus

IP04909.pep Sequence

Translation from 1 to 1074

> IP04909.pep
RAGGVKKRAAYIWAPPKLVVMHELIGKYSHSDMDMLKDQLKRGGYMGALG
PPTPGTSAPSPFLMPAEFYKSLLASAVLQQQQQHKFYAGTPSPSPAPSLS
PTSGRHLLFSTAAAATACAPENGHVKTELEEQDQQNGMPETVGHEEQKPI
IEENPTPNKPHNNNGYSWSTGNNNEVVSHSSNGHTNNHPTTPPTPPNEAS
ATQATSVSAINLNQAQPASQTRSNFGSSIKSPPSEPDAVTAATCKSQENN
SGQNPTPNSLSDHNPAHNLNSNSTAAAVAAAAAAAAAANMPIGGVQGQNP
TQGLVHWMSAVMAEHMTGQTHHDPGAVGMHYMWNGNVDVSINWITGFTGA
GKIRGAC*

IP04909.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 13:14:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17309-PA 808 GF17309-PA 179..362 162..339 502 67.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 13:14:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25249-PA 941 GG25249-PA 151..338 156..338 719 85 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 13:14:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19279-PA 543 GH19279-PA 218..355 199..338 326 66.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:56:00
Subject Length Description Subject Range Query Range Score Percent Strand
rn-PF 927 CG42277-PF 1..318 21..338 1702 100 Plus
rn-PE 946 CG42277-PE 48..337 44..338 975 66.7 Plus
rn-PG 952 CG42277-PG 48..337 44..338 975 66.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 13:14:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23488-PA 374 GI23488-PA 213..362 189..341 335 64.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 13:14:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12185-PA 514 GL12185-PA 1..342 21..338 543 54.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 13:14:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA26220-PD 374 GA26220-PD 205..350 198..344 422 72.3 Plus
Dpse\GA26220-PC 971 GA26220-PC 205..344 198..338 408 73.2 Plus
Dpse\GA26220-PA 963 GA26220-PA 197..336 198..338 404 74.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 13:14:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10489-PA 509 GM10489-PA 156..338 156..338 742 96.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 13:14:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19488-PA 943 GD19488-PA 155..337 156..338 750 97.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 13:14:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10240-PA 539 GJ10240-PA 171..369 142..338 342 54.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 13:14:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11084-PA 530 GK11084-PA 133..315 151..338 363 58.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 13:14:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11134-PA 367 GE11134-PA 151..358 156..356 700 86.6 Plus
Dyak\GE25797-PA 943 GE25797-PA 153..343 156..338 658 88 Plus