Clone IP05259 Report

Search the DGRC for IP05259

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:52
Well:59
Vector:pOT2
Associated Gene/TranscriptCG13427-RA
Protein status:IP05259.pep: gold
Preliminary Size:318
Sequenced Size:1094

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13427 2005-01-01 Successful iPCR screen
CG13427 2008-04-29 Stopped prior to 5.5
CG13427-RA 2009-01-21 est gleaning

Clone Sequence Records

IP05259.complete Sequence

1094 bp assembled on 2009-06-15

GenBank Submission: BT088820.1

> IP05259.complete
CGGAAATGAAGCTACTCTGCGTTGTTTTGGTTATTTACGTTGTGGCTCTG
ACCCTCTTCGGAGTCGATGGACGTGGTGGGGGCACCACAAATGGAGTGGA
GGAACCAAAGTTCGTCGGTTTGTTCAGGCGGGCAAGGCGCCATGTCCCCG
CAATGAAAACCGCCCTTCTTCACGGCAACGAACCGCCTCCACCTCCGAAA
TTCCGATCCCGTCGTGATACATTGGAGGACAAGCTCGTGGCCAATGATGA
TCCTCCACCACCGCCGCAGTTCAGACAACGTCGTCAGGCTCCACCTGGAA
TGCCACCACCGCCGGACGGCCTTCCACCACCACCCCAGTTCCTTCTCTAA
AGTAATGTAAAGCATAAAGTTGGGCGTTTGTGCATGTATTTGGGAACCAC
ATCGAAGCTAATAAAAGTAGTTTGAAGCATTCCAAAAATGACCACACCCG
AATTTCCTTAAGCCATTAACCATAAACCATAGAGGGTAATTTTCTGGGAA
ATTCAACGGGCTAATCACCTTGTGCAGCTGCTCTCGGGATAATGGGCCAT
AATCCTGTGACAGGTAGAGAAGAAAACCTGTTCTACCTGCACCATCTATT
GCTCCTATTTAAGGTGAGTCTGTGCTCTTCGGAAATCAGTTTACATTTGC
CAACAGATCATACAACACGCACACACACCTTTCGAGATGAAGTTCGTGGC
CATTCTTCTGCTGAGCAGCCTCACCATTGCGATGGTTTTGGCATTTCCTG
ATAACGACGATAAAAATGTTCTTGTGCCAGCTGATATGCAGCATGTTGCT
CCACTGGCCGCAGCAGCAGATCCCCCGACGTCGGCAGACCAAGTCTCTAA
CAGCATACGCGGTCCACGCCATCTCCTGAGCAAATTGTTCCAGCCCAAGA
CCGTGGTGGTGCAGCCAGTGATTGTGGAGCAGGTGGCTCCAAGACAGTAC
CCCGGATACGCACAGCCCTATCCGTACTACAACCAGGGCCGACGCTACTG
GTAGACCGTATTTTAAGCAGCTATTTGTAACCGAATTTAATAAAATAAAG
ACGCCTGGCCTTTAAGTCAAAGATTAAAAAAAAAAAAAAAAAAA

IP05259.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:32:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG13428-RA 692 CG13428-RA 116..692 1..577 2885 100 Plus
CG13427-RA 438 CG13427-RA 1..438 638..1075 2190 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:47:56
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 16425632..16426432 1075..276 3790 98.5 Minus
chr2R 21145070 chr2R 16427061..16427162 102..1 495 99 Minus
chr2R 21145070 chr2R 16426721..16426796 206..131 365 98.7 Minus
chr2R 21145070 chr2R 16426501..16426569 275..207 345 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:45:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:47:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20538875..20539676 1077..276 4010 100 Minus
2R 25286936 2R 20540305..20540406 102..1 510 100 Minus
2R 25286936 2R 20539965..20540040 206..131 380 100 Minus
2R 25286936 2R 20539745..20539813 275..207 345 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:48:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 20540074..20540875 1077..276 4010 100 Minus
2R 25260384 2R 20541504..20541605 102..1 510 100 Minus
2R 25260384 2R 20541164..20541239 206..131 380 100 Minus
2R 25260384 2R 20540944..20541012 275..207 345 100 Minus
2R 25260384 2R 20541419..20541451 132..100 165 100 Minus
Blast to na_te.dros performed on 2019-03-16 21:47:55 has no hits.

IP05259.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:48:53 Download gff for IP05259.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 16426977..16427006 102..131 100 <- Minus
chr2R 16427062..16427162 1..101 99   Minus
chr2R 16425632..16426432 276..1075 98 <- Minus
chr2R 16426501..16426569 207..275 100 <- Minus
chr2R 16426721..16426795 132..206 98 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:10:33 Download gff for IP05259.complete
Subject Subject Range Query Range Percent Splice Strand
CG13428-RA 1..345 6..350 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:47:56 Download gff for IP05259.complete
Subject Subject Range Query Range Percent Splice Strand
CG13428-RA 1..345 6..350 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:02:54 Download gff for IP05259.complete
Subject Subject Range Query Range Percent Splice Strand
CG13428-RA 1..345 6..350 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:31:36 Download gff for IP05259.complete
Subject Subject Range Query Range Percent Splice Strand
CG13428-RA 1..345 6..350 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-06-15 14:53:07 Download gff for IP05259.complete
Subject Subject Range Query Range Percent Splice Strand
CG13428-RA 43..483 1..441 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:47:56 Download gff for IP05259.complete
Subject Subject Range Query Range Percent Splice Strand
CG13428-RA 43..483 1..441 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:02:54 Download gff for IP05259.complete
Subject Subject Range Query Range Percent Splice Strand
CG13427-RA 1..440 636..1075 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:31:36 Download gff for IP05259.complete
Subject Subject Range Query Range Percent Splice Strand
CG13427-RA 1..440 636..1075 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:48:53 Download gff for IP05259.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20538877..20539676 276..1075 100 <- Minus
2R 20539745..20539813 207..275 100 <- Minus
2R 20539965..20540039 132..206 100 <- Minus
2R 20540221..20540250 102..131 100 <- Minus
2R 20540306..20540406 1..101 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:48:53 Download gff for IP05259.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20538877..20539676 276..1075 100 <- Minus
2R 20539745..20539813 207..275 100 <- Minus
2R 20539965..20540039 132..206 100 <- Minus
2R 20540221..20540250 102..131 100 <- Minus
2R 20540306..20540406 1..101 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:48:53 Download gff for IP05259.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20538877..20539676 276..1075 100 <- Minus
2R 20539745..20539813 207..275 100 <- Minus
2R 20539965..20540039 132..206 100 <- Minus
2R 20540221..20540250 102..131 100 <- Minus
2R 20540306..20540406 1..101 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:02:54 Download gff for IP05259.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16426382..16427181 276..1075 100 <- Minus
arm_2R 16427250..16427318 207..275 100 <- Minus
arm_2R 16427470..16427544 132..206 100 <- Minus
arm_2R 16427726..16427755 102..131 100 <- Minus
arm_2R 16427811..16427911 1..101 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:23:27 Download gff for IP05259.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20540076..20540875 276..1075 100 <- Minus
2R 20540944..20541012 207..275 100 <- Minus
2R 20541164..20541238 132..206 100 <- Minus
2R 20541420..20541449 102..131 100 <- Minus
2R 20541505..20541605 1..101 100   Minus

IP05259.hyp Sequence

Translation from 2 to 349

> IP05259.hyp
EMKLLCVVLVIYVVALTLFGVDGRGGGTTNGVEEPKFVGLFRRARRHVPA
MKTALLHGNEPPPPPKFRSRRDTLEDKLVANDDPPPPPQFRQRRQAPPGM
PPPPDGLPPPPQFLL*

IP05259.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:34:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG13428-PA 114 CG13428-PA 1..114 2..115 620 100 Plus
CG13428-PB 89 CG13428-PB 1..89 2..115 444 78.1 Plus

IP05259.pep Sequence

Translation from 686 to 1003

> IP05259.pep
MKFVAILLLSSLTIAMVLAFPDNDDKNVLVPADMQHVAPLAAAADPPTSA
DQVSNSIRGPRHLLSKLFQPKTVVVQPVIVEQVAPRQYPGYAQPYPYYNQ
GRRYW*

IP05259.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:01:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12666-PA 113 GF12666-PA 1..113 1..105 241 49.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:01:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20861-PA 105 GG20861-PA 1..105 1..105 446 90.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:09:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG13427-PA 105 CG13427-PA 1..105 1..105 545 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:01:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18669-PA 112 GI18669-PA 1..90 1..96 152 41.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:01:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16812-PA 104 GL16812-PA 1..100 1..99 193 48.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:01:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12280-PA 104 GA12280-PA 1..100 1..99 195 49.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:01:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19786-PA 105 GM19786-PA 1..105 1..105 445 93.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:01:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25277-PA 72 GD25277-PA 1..72 34..105 363 97.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:01:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13799-PA 105 GE13799-PA 1..105 1..105 478 93.3 Plus