Clone IP05392 Report

Search the DGRC for IP05392

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:53
Well:92
Vector:pOT2
Associated Gene/Transcriptpallidin-RD
Protein status:IP05392.pep: wuzgold
Preliminary Size:363
Sequenced Size:1025

Clone Sequence Records

IP05392.complete Sequence

1025 bp assembled on 2011-03-15

GenBank Submission: BT126148.1

> IP05392.complete
CTTAACAATCAGCTGCTTTTGTTTTTTAATCTCTTATTGGTTTGTTTATT
GGTTTTATTTGATATTATGTTGAAGAGCAGCAATATAAATAGTGTCCTCA
ACGAACTCCCTAATGACCCAGCAAGGGATTCCACCGCCCAATCTTCTCAC
AATGGAAAACCAAAACAAGATGCGGAAACCTGTTGCTCCTCCCAGGACAA
CGAAGTCATGGCCAGTCTAGCCGCTTTACAGTTGTCCGCTGGCGTCCTGC
AAATAGCGGAGCCTCCACTAAACCATGTGCGCACCCAGCTTAGGGAATTG
ATGTAAGCACTGTGGTTCGGATTTTAAAAATCACTTCACGGACTGCAAGT
CTCATTTCAGCGGTAGGCAGAACAAAACATACATCGATTTGTCCAAGGAG
AAATATAAACTGGACTGCAGCAGTGGCCAGGCTGAATGATATGATGAGCG
ATGTAAAGCGATACAAAGATAAGCTAACAAAAATCAAGAAGGAAATGCAG
GGCGTCTATCAGCGCACCAAAGAGTTAAAGAAACGAGCCGCTAACGTGGC
GGCCTGCAAGCAGCGTGACTACCAGCGGAAACTCGAGAGGCTACAGCACG
AGGAGTCGCTCATTGGCAGCCAGTAGACGAAGGGGATCAGTCAACACCTA
ACCAGGTGTCTCCCGGAATCTTCAAGCTACCTGTACCACCTCGTTAAAGC
GCATTTACATTGGGATTTCCGTTTACAACTAGCCAATATTGTAACAGATA
ACAGTTGAACAAAAGTTAAACCATTTGAATACATAATAATAATAATTATA
ATAATAACTGTATACGTTATAAGACCAGGCTATCGTATGTCTGCGATTAG
TTGGAAAACATTACATTGTATATTGTGTATAGTTAAGTAAGCACTTAAGA
GATTTCACAGAAAAAAAAAGATAAATGCGTCCAATGAGTAAAGGAAGCAA
ATTACTACTATACATTTAGCTGCAAATATTATTTATAAATATACAAATAT
TTATGTTTAAAAAAAAAAAAAAAAA

IP05392.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:30:07
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 11680519..11681002 1008..525 2405 99.8 Minus
chr3L 24539361 chr3L 11681789..11682144 443..90 1715 99.4 Minus
chr3L 24539361 chr3L 11682200..11682291 92..1 460 100 Minus
chr3L 24539361 chr3L 11681114..11681201 530..443 440 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:30:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11689629..11690114 1010..525 2415 99.8 Minus
3L 28110227 3L 11690897..11691252 443..90 1715 99.4 Minus
3L 28110227 3L 11691308..11691399 92..1 460 100 Minus
3L 28110227 3L 11690226..11690313 530..443 440 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:08:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 11682729..11683214 1010..525 2415 99.7 Minus
3L 28103327 3L 11683997..11684352 443..90 1725 99.4 Minus
3L 28103327 3L 11684408..11684499 92..1 460 100 Minus
3L 28103327 3L 11683326..11683413 530..443 440 100 Minus
Blast to na_te.dros performed on 2019-03-16 22:30:05 has no hits.

IP05392.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:30:43 Download gff for IP05392.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 11680556..11680996 531..971 94 <- Minus
chr3L 11681114..11681200 444..530 100 <- Minus
chr3L 11681789..11682141 93..443 99 <- Minus
chr3L 11682200..11682291 1..92 100   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-15 18:36:28 Download gff for IP05392.complete
Subject Subject Range Query Range Percent Splice Strand
pallidin-RC 1..90 208..297 100 == Plus
pallidin-RC 91..363 356..626 98   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:56:26 Download gff for IP05392.complete
Subject Subject Range Query Range Percent Splice Strand
pallidin-RB 1..231 67..297 100 == Plus
pallidin-RB 232..504 356..626 98   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:28:42 Download gff for IP05392.complete
Subject Subject Range Query Range Percent Splice Strand
Pallidin-RB 1..231 67..297 100 == Plus
Pallidin-RB 232..504 356..626 98   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-15 18:36:28 Download gff for IP05392.complete
Subject Subject Range Query Range Percent Splice Strand
pallidin-RD 1..1010 1..1008 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:56:26 Download gff for IP05392.complete
Subject Subject Range Query Range Percent Splice Strand
pallidin-RD 1..1010 1..1008 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:28:42 Download gff for IP05392.complete
Subject Subject Range Query Range Percent Splice Strand
Pallidin-RB 1..297 1..297 100 == Plus
Pallidin-RB 298..952 356..1008 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:30:43 Download gff for IP05392.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11689631..11690108 531..1008 100 <- Minus
3L 11690226..11690312 444..530 100 <- Minus
3L 11690897..11691249 93..443 99 <- Minus
3L 11691308..11691399 1..92 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:30:43 Download gff for IP05392.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11689631..11690108 531..1008 100 <- Minus
3L 11690226..11690312 444..530 100 <- Minus
3L 11690897..11691249 93..443 99 <- Minus
3L 11691308..11691399 1..92 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:30:43 Download gff for IP05392.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11689631..11690108 531..1008 100 <- Minus
3L 11690226..11690312 444..530 100 <- Minus
3L 11690897..11691249 93..443 99 <- Minus
3L 11691308..11691399 1..92 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:56:26 Download gff for IP05392.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11682731..11683208 531..1008 100 <- Minus
arm_3L 11683326..11683412 444..530 100 <- Minus
arm_3L 11683997..11684349 93..443 99 <- Minus
arm_3L 11684408..11684499 1..92 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:01:59 Download gff for IP05392.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11682731..11683208 531..1008 100 <- Minus
3L 11683326..11683412 444..530 100 <- Minus
3L 11683997..11684349 93..443 99 <- Minus
3L 11684408..11684499 1..92 100   Minus

IP05392.pep Sequence

Translation from 0 to 305

> IP05392.pep
LNNQLLLFFNLLLVCLLVLFDIMLKSSNINSVLNELPNDPARDSTAQSSH
NGKPKQDAETCCSSQDNEVMASLAALQLSAGVLQIAEPPLNHVRTQLREL
M*

IP05392.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 18:30:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24525-PA 169 GF24525-PA 1..81 23..101 211 56.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 18:30:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13899-PA 120 GG13899-PA 1..32 70..101 152 90.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 18:30:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16625-PA 161 GH16625-PA 1..71 23..101 146 48.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:35:53
Subject Length Description Subject Range Query Range Score Percent Strand
Pldn-PB 167 CG14133-PB 1..79 23..101 394 98.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 18:30:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16344-PA 173 GL16344-PA 1..82 23..101 178 52.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 18:30:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12783-PA 173 GA12783-PA 1..82 23..101 177 54.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 18:30:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24723-PA 120 GM24723-PA 1..32 70..101 155 93.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 18:30:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12785-PA 120 GD12785-PA 1..32 70..101 159 96.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 18:30:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11261-PA 161 GJ11261-PA 1..71 23..101 140 45.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 18:30:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20189-PA 167 GE20189-PA 1..79 23..101 368 89.9 Plus

IP05392.hyp Sequence

Translation from 0 to 305

> IP05392.hyp
LNNQLLLFFNLLLVCLLVLFDIMLKSSNINSVLNELPNDPARDSTAQSSH
NGKPKQDAETCCSSQDNEVMASLAALQLSAGVLQIAEPPLNHVRTQLREL
M*

IP05392.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:08:45
Subject Length Description Subject Range Query Range Score Percent Strand
Pallidin-PB 167 CG14133-PB 1..79 23..101 394 98.7 Plus