Clone IP05486 Report

Search the DGRC for IP05486

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:54
Well:86
Vector:pOT2
Associated Gene/TranscriptCG13984-RA
Protein status:IP05486.pep: gold
Preliminary Size:303
Sequenced Size:681

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13984 2005-01-01 Successful iPCR screen
CG13984 2008-04-29 Release 5.5 accounting
CG13984 2008-08-15 Release 5.9 accounting
CG13984 2008-12-18 5.12 accounting

Clone Sequence Records

IP05486.complete Sequence

681 bp (681 high quality bases) assembled on 2005-01-11

GenBank Submission: BT023645

> IP05486.complete
CAGGCGCGTAGAGGAGCATCAGATCTAAAATTTTCAGTTTTTGACATTAT
GGAGTATCAGCACTATTTGCAGAATGAGCTGACCATTTTCCACTACCACC
TACTCTTCGACTATGGAGCACCGATCCAGGTGGCCACTTGCATTGCCTTC
GGCGTCGTCTGCGGCTGGATAATGAGCCTGATCACATTCGTTGTCTACAA
GGCAGCAATTGGCCTGGGCGCCAAAGCCACGGCATGTGACAACGATGATA
AGTACGATGATCTCGACCTGGACATGCATGGGGAGTATGGGTATGACCGG
ATGTTGTCCCAGTGCCAGGACCTTAGTGATTGGCTTGTGAGGACACAGTA
GCTTAGACAGGATAACGCCTGAGGGGGCATTCGATTCGCCTTCTCTGTGC
ATGAGCCCCAATCAAAGTATCTCCACGCCACTTAGACCGTCTCGAGTGCG
CTGAGTGAATTTTTCAGATACTGTTACAGTGGCAGTATCGGATATTTTCT
CTGCCGTTCTCGAAGTCATTAGCATAATGTATCTCGACACTGTCATGGCC
TTAAATTGAATTCAGCATGCACCGCAGGCCGTCATTTATGCAAGTTTATT
TCTATAGACGAAGGCCGGAGGTTCCAAATATTTAATAAACCAAACCGTTT
CTGTTTGAAAAAAAAAAAAAAAAAAAAAAAA

IP05486.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:46:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG13984-RA 657 CG13984-RA 1..657 1..657 3285 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:22:25
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 6307869..6308525 1..657 3285 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:45:46 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:22:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6308819..6309480 1..662 3310 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:35:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6308819..6309480 1..662 3310 100 Plus
Blast to na_te.dros performed on 2019-03-16 10:22:23 has no hits.

IP05486.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:23:21 Download gff for IP05486.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 6307869..6308525 1..657 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:27:07 Download gff for IP05486.complete
Subject Subject Range Query Range Percent Splice Strand
CG13984-RA 1..303 49..351 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:15:38 Download gff for IP05486.complete
Subject Subject Range Query Range Percent Splice Strand
CG13984-RA 1..303 49..351 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:00:37 Download gff for IP05486.complete
Subject Subject Range Query Range Percent Splice Strand
CG13984-RA 1..303 49..351 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:00:06 Download gff for IP05486.complete
Subject Subject Range Query Range Percent Splice Strand
CG13984-RA 1..303 49..351 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:06:19 Download gff for IP05486.complete
Subject Subject Range Query Range Percent Splice Strand
CG13984-RA 1..303 49..351 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:14:00 Download gff for IP05486.complete
Subject Subject Range Query Range Percent Splice Strand
CG13984-RA 1..303 49..351 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:15:38 Download gff for IP05486.complete
Subject Subject Range Query Range Percent Splice Strand
CG13984-RA 1..657 1..657 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:00:37 Download gff for IP05486.complete
Subject Subject Range Query Range Percent Splice Strand
CG13984-RA 1..657 1..657 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:00:06 Download gff for IP05486.complete
Subject Subject Range Query Range Percent Splice Strand
CG13984-RA 1..303 49..351 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:06:19 Download gff for IP05486.complete
Subject Subject Range Query Range Percent Splice Strand
CG13984-RA 1..657 1..657 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:23:21 Download gff for IP05486.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6308819..6309475 1..657 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:23:21 Download gff for IP05486.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6308819..6309475 1..657 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:23:21 Download gff for IP05486.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6308819..6309475 1..657 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:00:37 Download gff for IP05486.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6308819..6309475 1..657 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:35:38 Download gff for IP05486.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6308819..6309475 1..657 100   Plus

IP05486.hyp Sequence

Translation from 0 to 350

> IP05486.hyp
QARRGASDLKFSVFDIMEYQHYLQNELTIFHYHLLFDYGAPIQVATCIAF
GVVCGWIMSLITFVVYKAAIGLGAKATACDNDDKYDDLDLDMHGEYGYDR
MLSQCQDLSDWLVRTQ*

IP05486.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:36:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG13984-PA 100 CG13984-PA 1..100 17..116 548 100 Plus

IP05486.pep Sequence

Translation from 48 to 350

> IP05486.pep
MEYQHYLQNELTIFHYHLLFDYGAPIQVATCIAFGVVCGWIMSLITFVVY
KAAIGLGAKATACDNDDKYDDLDLDMHGEYGYDRMLSQCQDLSDWLVRTQ
*

IP05486.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:10:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14514-PA 249 GF14514-PA 1..60 1..60 200 60 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:10:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10401-PA 107 GG10401-PA 1..100 1..100 445 82 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:10:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10735-PA 101 GH10735-PA 1..53 1..53 177 58.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:25:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG13984-PA 100 CG13984-PA 1..100 1..100 548 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:10:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11488-PA 99 GI11488-PA 1..75 1..76 184 52.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:10:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18618-PA 127 GM18618-PA 1..99 1..99 423 91.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:10:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23399-PA 100 GD23399-PA 1..100 1..100 424 92 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:10:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12762-PA 104 GJ12762-PA 1..53 1..53 177 60.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:10:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14751-PA 87 GK14751-PA 1..56 1..56 156 51.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:10:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13769-PA 100 GE13769-PA 1..100 1..100 444 81 Plus