Clone IP05844 Report

Search the DGRC for IP05844

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:58
Well:44
Vector:pOT2
Associated Gene/TranscriptCG42388-RF
Protein status:IP05844.pep: gold
Preliminary Size:351
Sequenced Size:2527

Clone Sequence Records

IP05844.complete Sequence

2527 bp assembled on 2010-04-28

GenBank Submission: BT124862.1

> IP05844.complete
TAGAAATGTGTCATAAATCAGTGGCATAACAAATGTGAATACTGTTCTAA
AGAGAAAACGATGAGAAGTGGAAACTTGAAGAAGATATGAACAAAACAAT
AAACTTTATTGTTAACAATTCAGCAATAGTTTTGTTTGTGCCAATAATTT
TGACCAAAAACTGTGTGTAATCCGCTGCCCCACATTCTCGCCAATGCGCG
ATCATACGGCGTTTTGAAGAGTTTGAGAAGCTCGGCACGTTATGCCAAGG
CCAAATCCAAGTCGGCCATTAATCTCAATGCCCATCTGAAGAAGCAGCAG
AAGCTGGAGGAAGGACATCCCGAAAAGAAGAGGCAGGATAAGAAAATACT
CAGACAGAGTGTCAGTGAGGATCAGCCGATCTATGCGAATGTGGACGAGG
TTATACCGATCCATTTAGAACCGGAAACCGGAACCGAAGTCGATGCTCTA
ATGGGTAATGCACAGGGACAGAACGGCTTCGAGGAACTCCGGCGATATGT
GAAGCAGGGCGGTGATTTTAGCAAGGAGCTCATCTTTGTCCTGCAGGAGA
GAGCCGATTCGGAGCTGATCTACTCCAAGTCGCTATCGAAACTGGCCAAC
AAGCTGAACAAAGCGGGCAGGGAAATTCCCGGGAGCGTGGCCGACGCCTG
GCGTGGAGTGGCTACGGAGATGGAGAGCCGCAGCGACATCCATCGCCAGT
TGGCAGCCTCGCTAACGGATGAGCTGGTCAAGCCGCTCAAGATCGTCGTC
GAAGGACATCACAAGGCGCGCAAGGCGGTGGAAAGCAACGTGGACAAGGC
GGCGCGAGTACTGGGCGAATGGCGAGCCAGCGAGGCGAAAGCCAAGAAGG
CCTCCCATACGGCGGCGCGCGAGAACGAGAAGCTGCAGGACGCAATGCTG
GACGTGCGCATCCAGAAGTCACCATCGATTGCCCTGCTCCACCAGGGACC
CAACAAGCAGGCCGCAGAAAAGGAGCTCAAGTCAGCGGAGAAGGATTGCG
TCAAGCTGGATAACAAGCGCAAGAAGGCCGAGGAGGCGGTGAAGCGTGCG
GATGTGGAATACTACACCCTGTGCGTGCGTTCGGAGCGAGCACGCGTAGA
CTGGGAGATGGCCGTGCTCCGGGGAAGTGCCCAACTGCAGAGCAGCGAAC
AGCAGCGGCTGGGCAATATGCACAACTTTGCCCAGCAGTATGCACGCCTC
ATCTCGGACATGAATCCGATACTCGGTGGCCTGAGCACACGCCTGCAGCC
GCAACTCGATGCTTGCAATGTGGCTAAGGATATGCAAGTGGTGCGCCACA
TCCGCCGCAATTCGGAGGGACCCAGTGAGCAACTCCTACCGGACTTTTAC
TGCGAACACACCACGCTGGCCATGAATCGGGAGCGTCGCAAGCACGCTCT
GATCAAGCTGCTGCAGCTGGTCAAGACGGATCTGGAGCGGGAGCGACGAT
CCCGCGACGGATTGAGGGGACTGTCGCAATCGCTTAACCATCAGGAGCAT
CAGAACATCACCGATAAGCTGTACCACATTCGTTCCATGCTGACCTATTT
GGAGGGCGCCCGTCTCAAGCTGCACTCTGCCCTCTTGGAGCTGGACCACA
AGCCCAGAGCCACTCACCCACTGGCCCAGCACATTCATATCACCCGTGAC
CGCACTGGTTTGCAGCAGAGCATCCTGAAGGTGCCCAACTGGCTGAAGAA
CAACGACAAGTCGCAGACGCAGCAATCGACCAGTATGCTGGCCCACGACA
TCACCGACATAACCACTAACCACGAGGATGAGCTTCCCGACGAGAACTGC
TCCCACCTGCACAGCAGTAGCCATAGCAACAATAATAGCAACGGCTCCTG
CACAGATGTCAGTTCGGTGGTGAAGCCTTTTAACCGAAGCAAAAGCAACA
TCGAGACCAATTTCACCAGTCAACCAAAGATAATCTCGACGACAAATGCC
GCGATTGCCGTGTCCGTTAAGTCCAAAACCCTGGCCAATCTGCAGGATGG
CCATCACAATAACCAACAGCACCATCATCATCATCATAATCATCACAGCG
ATCGCGGCCAGGCGGATGGTGGATCCAATCAGCAGGACTCTGATTTCGAT
GAGTTCAGCTCGCAGGACGAGGACGACGAGCCGCAGCAGCCGCAGCAACA
ACCGCAGCCGTTGCAATCGCAGCAGCAGCAACAGCAGCCGTTGCTGCAAA
ATCCAACCATCAATGGCCAAGTGCAGACGCAGCATTTCTATCAGAATGCG
CAGGAACTGCAGAAGGGCCAAAAGAACGGATCCGTTCCGATACTGGGACG
CTGCAAGGCACTGTATAGCTACACCCCGAAGCTCTACGACGAGCTGGAAC
TGAGTCCCGGCGACATCATCGAGGTGCATGCCAAACAGGACGACGGCTGG
TGGCTGGGCGCCCTGCGCAATCACATCGGCATCTTTCCGGCCACCTATGT
GGAGGAGTGCGCCTAGTTCTAGTTGGGAAACGCCCTGCCAGCTTCCCTCC
ATAGCTATAAAAAAAAAAAAAAAAAAA

IP05844.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:16:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG42388.t 3513 CG42388.t 1..2525 1..2525 12610 99.9 Plus
CG42388.l 3782 CG42388.l 1..2525 1..2525 12610 99.9 Plus
CG42388.o 2817 CG42388.o 1..2525 1..2525 12610 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:13:29
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 8944251..8945120 1639..2508 4260 99.3 Plus
chrX 22417052 chrX 8943266..8944016 777..1527 3710 99.6 Plus
chrX 22417052 chrX 8931833..8932112 187..466 1400 100 Plus
chrX 22417052 chrX 8942980..8943209 550..779 1120 99.1 Plus
chrX 22417052 chrX 8931470..8931655 1..186 885 98.4 Plus
chrX 22417052 chrX 8944076..8944186 1528..1638 525 98.2 Plus
chrX 22417052 chrX 8942830..8942919 462..551 450 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:13:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9052450..9053336 1639..2525 4420 99.9 Plus
X 23542271 X 9051467..9052217 777..1527 3755 100 Plus
X 23542271 X 9040038..9040317 187..466 1400 100 Plus
X 23542271 X 9051183..9051412 550..779 1150 100 Plus
X 23542271 X 9039675..9039860 1..186 930 100 Plus
X 23542271 X 9052278..9052388 1528..1638 555 100 Plus
X 23542271 X 9051033..9051122 462..551 450 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:34:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 9060548..9061434 1639..2525 4420 99.8 Plus
X 23527363 X 9059565..9060315 777..1527 3755 100 Plus
X 23527363 X 9048136..9048415 187..466 1400 100 Plus
X 23527363 X 9059281..9059510 550..779 1150 100 Plus
X 23527363 X 9047773..9047958 1..186 930 100 Plus
X 23527363 X 9060376..9060486 1528..1638 555 100 Plus
X 23527363 X 9059131..9059220 462..551 450 100 Plus
Blast to na_te.dros performed 2019-03-15 21:13:28
Subject Length Description Subject Range Query Range Score Percent Strand
Bari1 1728 Bari1 DMBARI1 1728bp AKA(S55767) Derived from X67681 (g7640) (Rel. 36, Last updated, Version 6). 1..66 164..96 129 71 Minus
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 2631..2708 1872..1947 115 62.8 Plus

IP05844.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:14:20 Download gff for IP05844.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 8931470..8931655 1..186 98 -> Plus
chrX 8931833..8932111 187..465 100 -> Plus
chrX 8942834..8942919 466..551 100 -> Plus
chrX 8942982..8943207 552..777 99 -> Plus
chrX 8943267..8944016 778..1527 99 -> Plus
chrX 8944076..8944186 1528..1638 98 -> Plus
chrX 8944251..8944740 1639..2128 93 == Plus
chrX 8944801..8945120 2189..2508 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:01:51 Download gff for IP05844.complete
Subject Subject Range Query Range Percent Splice Strand
CG42388-RF 1..2016 451..2466 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:24:54 Download gff for IP05844.complete
Subject Subject Range Query Range Percent Splice Strand
CG42388-RC 23..2307 183..2466 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:40:49 Download gff for IP05844.complete
Subject Subject Range Query Range Percent Splice Strand
CG42388-RC 23..2307 183..2466 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:46:35 Download gff for IP05844.complete
Subject Subject Range Query Range Percent Splice Strand
CG42388-RC 23..2307 183..2466 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:01:51 Download gff for IP05844.complete
Subject Subject Range Query Range Percent Splice Strand
CG42388-RF 1..2508 1..2508 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:24:54 Download gff for IP05844.complete
Subject Subject Range Query Range Percent Splice Strand
CG42388-RF 1..2508 1..2508 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:40:49 Download gff for IP05844.complete
Subject Subject Range Query Range Percent Splice Strand
CG42388-RF 1..2508 1..2508 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:46:35 Download gff for IP05844.complete
Subject Subject Range Query Range Percent Splice Strand
CG42388-RF 1..2508 1..2508 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:14:20 Download gff for IP05844.complete
Subject Subject Range Query Range Percent Splice Strand
X 9039675..9039860 1..186 100 -> Plus
X 9040038..9040316 187..465 100 -> Plus
X 9051037..9051122 466..551 100 -> Plus
X 9051185..9051410 552..777 100 -> Plus
X 9051468..9052217 778..1527 100 -> Plus
X 9052278..9052388 1528..1638 100 -> Plus
X 9052450..9053319 1639..2508 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:14:20 Download gff for IP05844.complete
Subject Subject Range Query Range Percent Splice Strand
X 9039675..9039860 1..186 100 -> Plus
X 9040038..9040316 187..465 100 -> Plus
X 9051037..9051122 466..551 100 -> Plus
X 9051185..9051410 552..777 100 -> Plus
X 9051468..9052217 778..1527 100 -> Plus
X 9052278..9052388 1528..1638 100 -> Plus
X 9052450..9053319 1639..2508 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:14:20 Download gff for IP05844.complete
Subject Subject Range Query Range Percent Splice Strand
X 9039675..9039860 1..186 100 -> Plus
X 9040038..9040316 187..465 100 -> Plus
X 9051037..9051122 466..551 100 -> Plus
X 9051185..9051410 552..777 100 -> Plus
X 9051468..9052217 778..1527 100 -> Plus
X 9052278..9052388 1528..1638 100 -> Plus
X 9052450..9053319 1639..2508 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:40:49 Download gff for IP05844.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8945218..8945443 552..777 100 -> Plus
arm_X 8946311..8946421 1528..1638 100 -> Plus
arm_X 8933708..8933893 1..186 100 -> Plus
arm_X 8934071..8934349 187..465 100 -> Plus
arm_X 8945070..8945155 466..551 100 -> Plus
arm_X 8945501..8946250 778..1527 100 -> Plus
arm_X 8946483..8947352 1639..2508 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:57:00 Download gff for IP05844.complete
Subject Subject Range Query Range Percent Splice Strand
X 9059135..9059220 466..551 100 -> Plus
X 9059283..9059508 552..777 100 -> Plus
X 9048136..9048414 187..465 100 -> Plus
X 9059566..9060315 778..1527 100 -> Plus
X 9060376..9060486 1528..1638 100 -> Plus
X 9060548..9061417 1639..2508 100   Plus
X 9047773..9047958 1..186 100 -> Plus

IP05844.pep Sequence

Translation from 450 to 2465

> IP05844.pep
MGNAQGQNGFEELRRYVKQGGDFSKELIFVLQERADSELIYSKSLSKLAN
KLNKAGREIPGSVADAWRGVATEMESRSDIHRQLAASLTDELVKPLKIVV
EGHHKARKAVESNVDKAARVLGEWRASEAKAKKASHTAARENEKLQDAML
DVRIQKSPSIALLHQGPNKQAAEKELKSAEKDCVKLDNKRKKAEEAVKRA
DVEYYTLCVRSERARVDWEMAVLRGSAQLQSSEQQRLGNMHNFAQQYARL
ISDMNPILGGLSTRLQPQLDACNVAKDMQVVRHIRRNSEGPSEQLLPDFY
CEHTTLAMNRERRKHALIKLLQLVKTDLERERRSRDGLRGLSQSLNHQEH
QNITDKLYHIRSMLTYLEGARLKLHSALLELDHKPRATHPLAQHIHITRD
RTGLQQSILKVPNWLKNNDKSQTQQSTSMLAHDITDITTNHEDELPDENC
SHLHSSSHSNNNSNGSCTDVSSVVKPFNRSKSNIETNFTSQPKIISTTNA
AIAVSVKSKTLANLQDGHHNNQQHHHHHHNHHSDRGQADGGSNQQDSDFD
EFSSQDEDDEPQQPQQQPQPLQSQQQQQQPLLQNPTINGQVQTQHFYQNA
QELQKGQKNGSVPILGRCKALYSYTPKLYDELELSPGDIIEVHAKQDDGW
WLGALRNHIGIFPATYVEECA*

IP05844.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:44:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19188-PA 539 GF19188-PA 1..487 74..570 2294 88.9 Plus
Dana\GF22925-PA 884 GF22925-PA 95..146 617..668 160 48.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:44:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18281-PA 586 GG18281-PA 1..585 74..670 2808 93.5 Plus
Dere\GG11778-PA 895 GG11778-PA 98..149 617..668 162 48.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:44:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17799-PA 575 GH17799-PA 1..575 74..671 2324 74.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:17:22
Subject Length Description Subject Range Query Range Score Percent Strand
Nost-PC 768 CG42388-PC 98..768 1..671 3492 100 Plus
Nost-PF 671 CG42388-PF 1..671 1..671 3492 100 Plus
Nost-PD 675 CG42388-PD 7..675 3..671 3471 99.7 Plus
Nost-PG 1225 CG42388-PG 559..1225 5..671 3468 99.9 Plus
Nost-PE 1225 CG42388-PE 559..1225 5..671 3468 99.9 Plus
Nost-PH 1330 CG42388-PH 664..1330 5..671 3468 99.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:44:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15139-PA 579 GI15139-PA 1..578 74..670 2286 72 Plus
Dmoj\GI22122-PA 267 GI22122-PA 54..105 617..668 153 48.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:44:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12974-PA 586 GL12974-PA 1..586 74..670 2306 76.9 Plus
Dper\GL12973-PA 628 GL12973-PA 599..628 5..34 163 96.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:44:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23051-PA 586 GA23051-PA 1..586 74..670 2307 76.8 Plus
Dpse\GA23046-PA 630 GA23046-PA 601..630 5..34 163 96.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:44:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13710-PA 593 GM13710-PA 1..593 74..671 3069 96.7 Plus
Dsec\GM12908-PA 774 GM12908-PA 97..148 617..668 158 48.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:44:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16922-PA 1030 GD16922-PA 1..487 74..572 2301 94.8 Plus
Dsim\GD21548-PA 892 GD21548-PA 97..148 617..668 162 48.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:44:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19000-PA 571 GJ19000-PA 1..571 74..671 2270 72.7 Plus
Dvir\GJ24244-PA 943 GJ24244-PA 84..135 617..668 162 48.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:44:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16231-PA 563 GK16231-PA 1..563 74..671 2325 77.4 Plus
Dwil\GK14156-PA 879 GK14156-PA 88..139 617..668 160 48.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:44:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15814-PA 587 GE15814-PA 1..587 74..671 3017 94.6 Plus
Dyak\GE10904-PA 903 GE10904-PA 98..149 617..668 162 48.1 Plus

IP05844.hyp Sequence

Translation from 450 to 2465

> IP05844.hyp
MGNAQGQNGFEELRRYVKQGGDFSKELIFVLQERADSELIYSKSLSKLAN
KLNKAGREIPGSVADAWRGVATEMESRSDIHRQLAASLTDELVKPLKIVV
EGHHKARKAVESNVDKAARVLGEWRASEAKAKKASHTAARENEKLQDAML
DVRIQKSPSIALLHQGPNKQAAEKELKSAEKDCVKLDNKRKKAEEAVKRA
DVEYYTLCVRSERARVDWEMAVLRGSAQLQSSEQQRLGNMHNFAQQYARL
ISDMNPILGGLSTRLQPQLDACNVAKDMQVVRHIRRNSEGPSEQLLPDFY
CEHTTLAMNRERRKHALIKLLQLVKTDLERERRSRDGLRGLSQSLNHQEH
QNITDKLYHIRSMLTYLEGARLKLHSALLELDHKPRATHPLAQHIHITRD
RTGLQQSILKVPNWLKNNDKSQTQQSTSMLAHDITDITTNHEDELPDENC
SHLHSSSHSNNNSNGSCTDVSSVVKPFNRSKSNIETNFTSQPKIISTTNA
AIAVSVKSKTLANLQDGHHNNQQHHHHHHNHHSDRGQADGGSNQQDSDFD
EFSSQDEDDEPQQPQQQPQPLQSQQQQQQPLLQNPTINGQVQTQHFYQNA
QELQKGQKNGSVPILGRCKALYSYTPKLYDELELSPGDIIEVHAKQDDGW
WLGALRNHIGIFPATYVEECA*

IP05844.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 05:51:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG42388-PC 768 CG42388-PC 98..768 1..671 3492 100 Plus
CG42388-PF 671 CG42388-PF 1..671 1..671 3492 100 Plus
CG42388-PD 675 CG42388-PD 7..675 3..671 3471 99.7 Plus
CG42388-PG 1225 CG42388-PG 559..1225 5..671 3468 99.9 Plus
CG42388-PE 1225 CG42388-PE 559..1225 5..671 3468 99.9 Plus