Clone IP06409 Report

Search the DGRC for IP06409

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:64
Well:9
Vector:pOT2
Associated Gene/TranscriptCG11539-RA
Protein status:IP06409.pep: gold
Preliminary Size:603
Sequenced Size:770

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11539 2005-01-01 Successful iPCR screen
CG11539 2008-04-29 Release 5.5 accounting
CG11539 2008-08-15 Release 5.9 accounting
CG11539 2008-12-18 5.12 accounting

Clone Sequence Records

IP06409.complete Sequence

770 bp (770 high quality bases) assembled on 2006-09-13

GenBank Submission: BT029052

> IP06409.complete
TTTTTCCAAATTTAAGGATGCATCTAAACGAGAACACCAAAATACTGGGT
CACAGGGTCATCCTTGTGCCCTACGAAGCGCGCCACGTGCCCAAGTACCA
CGAGTGGATGAGCAACGAGACCCTGAGGGAGTTGACCGCATCCGAGGAAC
TGACCTTAGAAGAGGAGCACGAGATGCAAAGGAGTTGGAGGGAGGACAGC
GACAAGCTGACCTTCATTGTCCTGGATGCAGAGACTTATTCGCGTGATCA
GGATGAGATTGCCGCCATGGTGGGCGACACCAATCTCTTCCTGCACCAAG
ATCCCGATAGCCAGATACCAACGGCGGAGGCGGAAATCATGATTGCCGAA
CCTTATGCACGGGGCAAGGGATTCGGCAGGGAAGCCATGCTCCTCATGCT
CAAGTACGCCCAATCGCAGCCCCAGCTTAAATTGGATAAATTCGAGGTCA
AGATCGACATGGACAACGCTGCATCGCTGCATTTGTTTAAGAGTTTTATG
TTCGTGGAGACGCGTCGAGTGGAGATCTTCCACGAGGTCACCCTGGAGCG
ACCTATCACTCCAGATTGGATCAACTGGCTGGACCAGCAGGTGGATCTGC
GTATGCAGTGCTATCAGTGAAAAGAAGCCTTTAGAATCGTAATTTCACGG
TCTGTTTATTACACTTATGTTACATCTACTTGTTTCGCTTGCCTTATTTA
TGCTGCATTTTACATCAAATGAATGTATTTATGGGTGAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA

IP06409.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:15:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG11539.b 901 CG11539.b 70..790 17..737 3605 100 Plus
CG11539.a 771 CG11539.a 70..703 17..650 3170 100 Plus
CG11539-RA 603 CG11539-RA 1..603 18..620 3015 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-17 00:03:47
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 27437667..27438403 737..1 3670 99.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:48:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 00:03:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31615284..31616020 737..1 3685 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:08:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 31356115..31356851 737..1 3685 100 Minus
Blast to na_te.dros performed on 2019-03-17 00:03:45 has no hits.

IP06409.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 00:04:40 Download gff for IP06409.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 27437667..27438403 1..737 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:29:22 Download gff for IP06409.complete
Subject Subject Range Query Range Percent Splice Strand
CG11539-RA 1..603 18..620 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:24:48 Download gff for IP06409.complete
Subject Subject Range Query Range Percent Splice Strand
CG11539-RA 1..603 18..620 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:28:50 Download gff for IP06409.complete
Subject Subject Range Query Range Percent Splice Strand
CG11539-RA 1..603 18..620 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:48:15 Download gff for IP06409.complete
Subject Subject Range Query Range Percent Splice Strand
CG11539-RA 1..603 18..620 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:08:50 Download gff for IP06409.complete
Subject Subject Range Query Range Percent Splice Strand
CG11539-RA 1..603 18..620 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:56:43 Download gff for IP06409.complete
Subject Subject Range Query Range Percent Splice Strand
CG11539-RA 1..603 18..620 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:24:48 Download gff for IP06409.complete
Subject Subject Range Query Range Percent Splice Strand
CG11539-RA 1..737 1..737 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:28:50 Download gff for IP06409.complete
Subject Subject Range Query Range Percent Splice Strand
CG11539-RA 1..737 1..737 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:48:16 Download gff for IP06409.complete
Subject Subject Range Query Range Percent Splice Strand
CG11539-RA 1..603 18..620 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:08:50 Download gff for IP06409.complete
Subject Subject Range Query Range Percent Splice Strand
CG11539-RA 1..737 1..737 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:04:40 Download gff for IP06409.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31615284..31616020 1..737 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:04:40 Download gff for IP06409.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31615284..31616020 1..737 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:04:40 Download gff for IP06409.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31615284..31616020 1..737 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:28:50 Download gff for IP06409.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27441006..27441742 1..737 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:52:20 Download gff for IP06409.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31356115..31356851 1..737 100   Minus

IP06409.hyp Sequence

Translation from 2 to 619

> IP06409.hyp
FPNLRMHLNENTKILGHRVILVPYEARHVPKYHEWMSNETLRELTASEEL
TLEEEHEMQRSWREDSDKLTFIVLDAETYSRDQDEIAAMVGDTNLFLHQD
PDSQIPTAEAEIMIAEPYARGKGFGREAMLLMLKYAQSQPQLKLDKFEVK
IDMDNAASLHLFKSFMFVETRRVEIFHEVTLERPITPDWINWLDQQVDLR
MQCYQ*

IP06409.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:42:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG11539-PB 200 CG11539-PB 1..200 6..205 1049 100 Plus
CG11539-PA 200 CG11539-PA 1..200 6..205 1049 100 Plus

IP06409.pep Sequence

Translation from 17 to 619

> IP06409.pep
MHLNENTKILGHRVILVPYEARHVPKYHEWMSNETLRELTASEELTLEEE
HEMQRSWREDSDKLTFIVLDAETYSRDQDEIAAMVGDTNLFLHQDPDSQI
PTAEAEIMIAEPYARGKGFGREAMLLMLKYAQSQPQLKLDKFEVKIDMDN
AASLHLFKSFMFVETRRVEIFHEVTLERPITPDWINWLDQQVDLRMQCYQ
*

IP06409.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 12:36:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23258-PA 199 GF23258-PA 1..199 1..199 856 79.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 12:36:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11861-PA 200 GG11861-PA 1..200 1..200 929 92.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 12:36:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18940-PA 201 GH18940-PA 1..199 1..200 727 71.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:05:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG11539-PB 200 CG11539-PB 1..200 1..200 1049 100 Plus
CG11539-PA 200 CG11539-PA 1..200 1..200 1049 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 12:36:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24198-PA 201 GI24198-PA 1..198 1..199 722 71 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 12:36:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23884-PA 199 GL23884-PA 1..197 1..199 792 74.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 12:36:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11058-PA 199 GA11058-PA 1..197 1..199 795 74.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 12:36:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16425-PA 200 GM16425-PA 1..200 1..200 963 96 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 12:36:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16381-PA 200 GD16381-PA 1..200 1..200 963 96 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 12:36:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24125-PA 202 GJ24125-PA 1..197 1..199 740 71.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 12:36:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11374-PA 197 GK11374-PA 1..197 1..199 757 71.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 12:36:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23310-PA 200 GE23310-PA 1..200 1..200 919 91.5 Plus