Clone IP06493 Report

Search the DGRC for IP06493

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:64
Well:93
Vector:pOT2
Associated Gene/TranscriptCG14512-RA
Protein status:IP06493.pep: gold
Preliminary Size:604
Sequenced Size:1703

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14512 2005-01-01 Successful iPCR screen
CG14512 2008-04-29 Release 5.5 accounting
CG14512 2008-08-15 Release 5.9 accounting
CG14512 2008-12-18 5.12 accounting

Clone Sequence Records

IP06493.complete Sequence

1703 bp (1703 high quality bases) assembled on 2006-01-24

GenBank Submission: BT024378

> IP06493.complete
CACAACTCGTAACAGCTGTGTCTTGTTGTTTAACTATTTACAGAAAATGC
ATTTGAACACTGTTTACATTACCGTTGGTACCACCAAATTCGATGCTCTA
ATATCAACTGCATCCACGGAACCCGCACTCAAAGCTCTACAGAACCGGAA
ATGCACCAAACTCGTCATACAGCACGGAAATTCGCAACCATTAACAGACG
ATGAAATACAATTGATAAGAAAAAACTACGGAATCCAGATAGAGCAGTAC
AATTTCCGGCCAAATACGGAGGACATCAAGTCCGCAGACCTAATTATTGG
ACATGCGGGAGCCGGAACTTGCATGGATATACTAAATAACCAGAAACCTG
GACTCATTGTGATAAATGACACGCTCATGGACAATCATCAACTGGAGTTG
GCCAAGCAACTGGCCGCTGAAAACTATCTGTATTACTGCAAAGTTACCGA
CGTGGATGCCCAGCTAGCTACTCTGGACTTTGAAGCCTTAAAGCCCTATG
AAACGAAACCGGAAAATCTTAGCAAATTCGTTTCCGCCATCAATCAGCTG
ATGTCCCATTGACTCCCAATAAGCATTCCCAAATGCAAGCTTCTTTTGGT
GCCAACCCCAAGGGGTTAGCCTTTTCTATTTATTTGAGTTTACAAGTATA
GTTAATAAACAGGAGAACGTCTACGAAGAACATTAAATATTGTTAGCAAT
CTAACGTTTGCTGGGGCTATACGATATACATACATAGATAAATTCACGAC
AATTAAACATTAAAACGTACATATATGTTTGTTACTGTAACTGGTAGATT
CCACTTATTTGGATAGTTAATTTCATATAACGCAATGAGACTCTCAACGT
GCTTTGGTTGTTGCTCTGACCGATATTCCGCTTTATTTACTCCTCGGCGG
CGGCAGCTCCGTTTTCTATGATGGCATCAAACGAGAAGGGTTGGAAGGCG
TAACCCTGGCCCTTGTAGAACTTGCTCTGGAACTCGACCCTATGAGAAAG
CCGTTCAATTAGATACCATTTCATACTTCTCGAGGATTAGGTGACTTACC
AATGGAGACGCAGGGTGTGCAGGAAGGCAGACAAGCCCTCCATGAGTACC
AGAATGCCAACGGTGAGAATGGCCCAGAAGGCAAACACGCAGGTCAATAC
AATGCCACCCACCGGCCCTTCCTGCTTCAAGCCAATCGATAGGACCATGG
TCCACAGCACCTCAGCCAACTCTGCCAAGTAAGAATGCTTGGTTTAAGTA
ATTATGTAGGTTTTTACTACTGCATTGATTACTTACGGGCATGGGCCAAG
GAAAGCGCCCACAATCGCAGATAGGAAGCGGTGTGGGATACCGAACCTAG
GACGTACTCGATGGTGTGGATGCTCTGGTGAATGAAGATCTCAGAGAGCT
CCTCTTCCTCCTCATGGCCACCGCCACCACCGTGTGAGCCGCTATTGGAC
ACGCCGCCGGCTTCTGCATCTGAAGTTGCTCCTGCAATGGGCTGTACCTG
CAAGTGAAGTATATTATTAACTGCGTTAAAGACGAACATTTGGGGGCACT
AAAGTCGAACTTCTCTAAACGAAAAAGTATTGACAGCATATTATACTATT
TAAATTTAATTATGCGATTAGAGAAGTTCGATTTAACATCGACAATAAAC
GACACGACTAACCTCTTCCTACGGTTTGTGGATTGAAAAAAAAAAAAAAA
AAA

IP06493.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:20:25
Subject Length Description Subject Range Query Range Score Percent Strand
Vha100-1-RD 3009 Vha100-1-RD 2608..3009 994..593 1995 99.7 Minus
Vha100-1-RA 3000 Vha100-1-RA 2599..3000 994..593 1995 99.7 Minus
Vha100-1-RF 3041 Vha100-1-RF 2640..3041 994..593 1995 99.7 Minus
Vha100-1-RD 3009 Vha100-1-RD 2230..2440 1497..1287 1055 100 Minus
Vha100-1-RA 3000 Vha100-1-RA 2221..2431 1497..1287 1055 100 Minus
Vha100-1-RF 3041 Vha100-1-RF 2262..2472 1497..1287 1055 100 Minus
Vha100-1-RD 3009 Vha100-1-RD 2441..2613 1221..1049 865 100 Minus
Vha100-1-RA 3000 Vha100-1-RA 2432..2604 1221..1049 865 100 Minus
Vha100-1-RF 3041 Vha100-1-RF 2473..2645 1221..1049 865 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:36:55
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 24959757..24961441 1685..1 8245 99.3 Minus
chr2L 23010047 chr2L 11742320..11742431 1392..1281 230 80.4 Minus
chr2R 21145070 chr2R 14796226..14796304 1049..1127 200 83.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:48:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:36:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29136886..29138572 1687..1 8435 100 Minus
2L 23513712 2L 11743624..11743735 1392..1281 230 80.4 Minus
2R 25286936 2R 18909084..18909162 1049..1127 200 83.5 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:13:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 28877717..28879403 1687..1 8435 100 Minus
2L 23513712 2L 11743624..11743735 1392..1281 230 80.3 Minus
2R 25260384 2R 18910283..18910361 1049..1127 200 83.5 Plus
3R 31820162 3R 18131549..18131602 1049..1102 165 87 Plus
3R 31820162 3R 18131786..18131878 1280..1372 165 78.4 Plus
Blast to na_te.dros performed 2019-03-15 23:36:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2828..2871 1501..1460 116 77.3 Minus

IP06493.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:37:32 Download gff for IP06493.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 24959757..24961441 1..1685 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:29:48 Download gff for IP06493.complete
Subject Subject Range Query Range Percent Splice Strand
CG14512-RA 1..516 47..562 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:35:49 Download gff for IP06493.complete
Subject Subject Range Query Range Percent Splice Strand
CG14512-RA 1..516 47..562 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:07:10 Download gff for IP06493.complete
Subject Subject Range Query Range Percent Splice Strand
CG14512-RA 1..516 47..562 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:10:31 Download gff for IP06493.complete
Subject Subject Range Query Range Percent Splice Strand
CG14512-RA 1..516 47..562 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:42:38 Download gff for IP06493.complete
Subject Subject Range Query Range Percent Splice Strand
CG14512-RA 1..516 47..562 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:07:19 Download gff for IP06493.complete
Subject Subject Range Query Range Percent Splice Strand
Vha100-1-RC 2702..3109 591..997 99   Minus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:35:49 Download gff for IP06493.complete
Subject Subject Range Query Range Percent Splice Strand
Vha100-1-RH 2496..2901 593..997 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:07:10 Download gff for IP06493.complete
Subject Subject Range Query Range Percent Splice Strand
CG14512-RA 2..604 1..603 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:10:32 Download gff for IP06493.complete
Subject Subject Range Query Range Percent Splice Strand
Vha100-1-RF 2636..3043 591..997 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:42:38 Download gff for IP06493.complete
Subject Subject Range Query Range Percent Splice Strand
CG14512-RA 2..604 1..603 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:37:32 Download gff for IP06493.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29136888..29138572 1..1685 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:37:32 Download gff for IP06493.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29136888..29138572 1..1685 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:37:32 Download gff for IP06493.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29136888..29138572 1..1685 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:07:10 Download gff for IP06493.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24962610..24964294 1..1685 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:59:31 Download gff for IP06493.complete
Subject Subject Range Query Range Percent Splice Strand
3R 28877719..28879403 1..1685 100   Minus

IP06493.hyp Sequence

Translation from 0 to 561

> IP06493.hyp
TTRNSCVLLFNYLQKMHLNTVYITVGTTKFDALISTASTEPALKALQNRK
CTKLVIQHGNSQPLTDDEIQLIRKNYGIQIEQYNFRPNTEDIKSADLIIG
HAGAGTCMDILNNQKPGLIVINDTLMDNHQLELAKQLAAENYLYYCKVTD
VDAQLATLDFEALKPYETKPENLSKFVSAINQLMSH*

IP06493.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:43:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG14512-PA 171 CG14512-PA 1..171 16..186 881 100 Plus

IP06493.pep Sequence

Translation from 46 to 561

> IP06493.pep
MHLNTVYITVGTTKFDALISTASTEPALKALQNRKCTKLVIQHGNSQPLT
DDEIQLIRKNYGIQIEQYNFRPNTEDIKSADLIIGHAGAGTCMDILNNQK
PGLIVINDTLMDNHQLELAKQLAAENYLYYCKVTDVDAQLATLDFEALKP
YETKPENLSKFVSAINQLMSH*

IP06493.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 13:17:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22939-PA 170 GF22939-PA 1..170 1..170 699 74.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 13:17:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12036-PA 171 GG12036-PA 1..171 1..171 858 93 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 13:17:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13947-PA 171 GH13947-PA 1..171 1..171 647 67.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:25:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG14512-PA 171 CG14512-PA 1..171 1..171 881 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 13:17:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24839-PA 171 GI24839-PA 1..171 1..171 671 69 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 13:17:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23604-PA 179 GL23604-PA 1..170 1..170 633 65.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 13:17:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13043-PA 179 GA13043-PA 1..170 1..170 623 65.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 13:17:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12261-PA 171 GM12261-PA 1..171 1..171 844 92.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 13:17:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17960-PA 171 GD17960-PA 1..171 1..171 866 94.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 13:17:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24482-PA 171 GJ24482-PA 1..170 1..170 628 64.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 13:17:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11188-PA 172 GK11188-PA 1..169 1..169 532 63.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 13:17:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10474-PA 171 GE10474-PA 1..171 1..171 853 93 Plus