IP06556.complete Sequence
950 bp (950 high quality bases) assembled on 2006-06-06
GenBank Submission: BT025909
> IP06556.complete
ATTACTTGTTATCACATCGAGTAAATGGGACGCAAAGGCCACAAGACTAG
AAGGAAAGTTAAAGTCCACTCGAAGGTCCATCCTCCTCAGAAAATTAAAG
CGAAGCTGCCGAAAAGAGATAAACGTAGCACACTTCGTCCCAAGATTAAT
AATTCGAAGGTTTTTCACGTGAACTGCTGCAAGTACAAGATCCGTTCGAG
ACCCATGAGGCGCAATCAGTGCAACCTGGCCACCCAGTGCCCCTCCCACA
CGGTCGCCATCGCCCCGTCTGTGCCGCTCCTGCATCATCCTGTCCGGCGG
AAGGTGGTCCATATGCCGGAAACCGTGGTCATGCACATGCGGAATATGGA
GGACGCCCGCCGAGTGGCGGTTAAGCACAGAAGAACCCTTATTCAAACCC
ATGTTCCTTCGCCGGATGTGGATGATGACGAAGATACACACCAAATCGAT
CGGAGGTCAAGGCAAGCCTATAGGATGGGTCAAATGAGACCCTTATCCAG
CGACGTGGATGTGGATGACATGGATGTGGACCCGTTTCAGTAGGGATGTG
TGTTGGAAATATATTGTAGTTGCCAATCCACATATCCCGTGAGACGAGGG
ATTCCATTGCCACTTCTAACTAGTTGCTTCGCCCCATGGGCATATCGTGA
TCATCCATAAAACCACGCCCCTCCGCCAGTCTCCCCAAGCCCAACCAAGC
TGTCCAGGACAATTAATTTTACACCGGCTTGTCAGCTTATTGTTTATCTA
CATAACTACGGAACACGGAGAACAGAGAACAGAGGACGACTGCCCTGAGC
TGTCGTGTCATTTATTCAGCTGCTCCGACCGGGCTCGACTTTCGATATCC
TTTGGGCCGCGGTGCAGTTGCCACACCATTTATGCCATTAAGTCATTAGC
TTTGTTTAACAAATAACAAACTGTCAATGAGTGAAAAAAAAAAAAAAAAA
IP06556.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 17:14:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13541.a | 1545 | CG13541.a | 67..1000 | 1..934 | 4670 | 100 | Plus |
CG13541-RA | 1033 | CG13541-RA | 67..1000 | 1..934 | 4670 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:54:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2R | 21145070 | chr2R | 19170667..19171235 | 1..569 | 2785 | 99.3 | Plus |
chr2R | 21145070 | chr2R | 19171296..19171662 | 567..933 | 1805 | 99.5 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:48:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:54:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23284280..23284848 | 1..569 | 2845 | 100 | Plus |
2R | 25286936 | 2R | 23284909..23285276 | 567..934 | 1840 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:07:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25260384 | 2R | 23285479..23286047 | 1..569 | 2845 | 100 | Plus |
2R | 25260384 | 2R | 23286108..23286475 | 567..934 | 1840 | 100 | Plus |
Blast to na_te.dros performed on 2019-03-16 23:54:43 has no hits.
IP06556.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:55:33 Download gff for
IP06556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2R | 19170667..19171235 | 1..569 | 99 | -> | Plus |
chr2R | 19171299..19171662 | 570..933 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:29:59 Download gff for
IP06556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13541-RA | 1..519 | 25..543 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:23:10 Download gff for
IP06556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13541-RA | 1..519 | 25..543 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:53:12 Download gff for
IP06556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13541-RA | 1..519 | 25..543 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:41:45 Download gff for
IP06556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13541-RA | 1..519 | 25..543 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:03:33 Download gff for
IP06556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13541-RA | 1..519 | 25..543 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:51:21 Download gff for
IP06556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13541-RA | 1..933 | 1..933 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:23:09 Download gff for
IP06556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13541-RA | 1..933 | 1..933 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:53:12 Download gff for
IP06556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13541-RA | 54..986 | 1..933 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:41:45 Download gff for
IP06556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13541-RA | 1..519 | 25..543 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:03:33 Download gff for
IP06556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13541-RA | 54..986 | 1..933 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:55:33 Download gff for
IP06556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23284280..23284848 | 1..569 | 100 | -> | Plus |
2R | 23284912..23285275 | 570..933 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:55:33 Download gff for
IP06556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23284280..23284848 | 1..569 | 100 | -> | Plus |
2R | 23284912..23285275 | 570..933 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:55:33 Download gff for
IP06556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23284280..23284848 | 1..569 | 100 | -> | Plus |
2R | 23284912..23285275 | 570..933 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:53:12 Download gff for
IP06556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19171803..19172371 | 1..569 | 100 | -> | Plus |
arm_2R | 19172435..19172798 | 570..933 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:51:12 Download gff for
IP06556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23285497..23286065 | 1..569 | 100 | -> | Plus |
2R | 23286129..23286492 | 570..933 | 100 | | Plus |
IP06556.hyp Sequence
Translation from 24 to 542
> IP06556.hyp
MGRKGHKTRRKVKVHSKVHPPQKIKAKLPKRDKRSTLRPKINNSKVFHVN
CCKYKIRSRPMRRNQCNLATQCPSHTVAIAPSVPLLHHPVRRKVVHMPET
VVMHMRNMEDARRVAVKHRRTLIQTHVPSPDVDDDEDTHQIDRRSRQAYR
MGQMRPLSSDVDVDDMDVDPFQ*
IP06556.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:44:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13541-PB | 172 | CG13541-PB | 1..172 | 1..172 | 920 | 100 | Plus |
CG13541-PA | 172 | CG13541-PA | 1..172 | 1..172 | 920 | 100 | Plus |
IP06556.pep Sequence
Translation from 24 to 542
> IP06556.pep
MGRKGHKTRRKVKVHSKVHPPQKIKAKLPKRDKRSTLRPKINNSKVFHVN
CCKYKIRSRPMRRNQCNLATQCPSHTVAIAPSVPLLHHPVRRKVVHMPET
VVMHMRNMEDARRVAVKHRRTLIQTHVPSPDVDDDEDTHQIDRRSRQAYR
MGQMRPLSSDVDVDDMDVDPFQ*
IP06556.pep Blast Records
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:22:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG22838-PA | 174 | GG22838-PA | 1..171 | 1..165 | 535 | 68.4 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:15:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13541-PB | 172 | CG13541-PB | 1..172 | 1..172 | 920 | 100 | Plus |
CG13541-PA | 172 | CG13541-PA | 1..172 | 1..172 | 920 | 100 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:22:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM15995-PA | 172 | GM15995-PA | 1..172 | 1..172 | 749 | 85.5 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:22:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD11747-PA | 172 | GD11747-PA | 1..172 | 1..172 | 720 | 86 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:22:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE14273-PA | 112 | GE14273-PA | 1..112 | 61..172 | 401 | 68.8 | Plus |