Clone IP06563 Report

Search the DGRC for IP06563

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:65
Well:63
Vector:pOT2
Associated Gene/TranscriptCG13856-RA
Protein status:IP06563.pep: gold
Preliminary Size:570
Sequenced Size:889

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13856 2005-01-01 Successful iPCR screen
CG13856 2008-04-29 Release 5.5 accounting
CG13856 2008-08-15 Release 5.9 accounting
CG13856 2008-12-18 5.12 accounting

Clone Sequence Records

IP06563.complete Sequence

889 bp (889 high quality bases) assembled on 2005-01-11

GenBank Submission: BT023606

> IP06563.complete
AAGCATCGGCAAAGCAGTGCGAGAAAACGCGAAAAGTGCATCTAAGACAT
TCGCTGTAAAATTTCAATGATCCAACTATAAACGTGATAGAACGTGTGCC
TAGCATTACGCATAAATTAATTTCCACAATCTAATGAAGTAAACATCTTT
CGCTTGAAGGACACCGTGGCAATAAATTGTACAATCGGCAAATATAATTA
AGGAAAATCACTAATCAACAAAGCCAACCGGCAGCTGCAGTCATAGCCAT
TTAAAAATGTCGCCGTTGCTTCCACTGGCATCGCTAATCATCTTGGCCAA
TTTGGTGGCATCTCGACCCTATTCCTATGGTCCACGGGCAGAAGCGCCTC
CCACGAGATTGGCCAACCGGATTGTGGTGCAGTCACCCTCGCTGGACAAC
TTGTATATGGACTACGTGGTCACATCGAAGCCGCTGAATCTGCGCAAGTA
CAACAAGAACGGCAGTAAGACGAAAAAAACGAAAAAGGATTCGAAAATAT
ATTACATACCCGTACCCCCACTGCCCTTCCGCCACATACCTGGCATCGGC
TTGGATTATCAGCCGATGAAAATCAATCCCATCCTTCACGAGTCGGAGAG
CACAACGAGAAAGACCACAACGGTTCGCCCACCGACGACGACGACATCTA
GCCCCAATCTGGATCATCGGAATCCGAGCAAAGTACTTCGAGTGCAACAC
CTCAAGGATTACTACTTCAATGGGCGCCCACATCGACTGCAGGTTGCCCA
TGCTGATAAAAAGTCCGGTCTGACGGCCCTTAACCTGAAGTCCAACTTTT
ATTATAACAAAAACATTATTTATTAGTACTGTTAGTTAGAAAATAATAAA
AACAAAAGAAAAACTCTACAAAAAAAAAAAAAAAAAAAA

IP06563.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:45:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG13856-RA 972 CG13856-RA 102..972 1..871 4355 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:05:06
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 18227982..18228595 256..869 3025 99.5 Plus
chr3R 27901430 chr3R 18226262..18226515 1..255 1180 98.4 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:48:56 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:05:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22404446..22405061 256..871 3080 100 Plus
3R 32079331 3R 22402729..22402983 1..255 1275 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:35:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 22145277..22145892 256..871 3080 100 Plus
3R 31820162 3R 22143560..22143814 1..255 1275 100 Plus
Blast to na_te.dros performed on 2019-03-16 14:05:04 has no hits.

IP06563.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:05:53 Download gff for IP06563.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 18226262..18226515 1..255 98 -> Plus
chr3R 18227982..18228595 256..869 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:30:00 Download gff for IP06563.complete
Subject Subject Range Query Range Percent Splice Strand
CG13856-RA 1..570 257..826 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:15:00 Download gff for IP06563.complete
Subject Subject Range Query Range Percent Splice Strand
CG13856-RA 1..570 257..826 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 14:44:25 Download gff for IP06563.complete
Subject Subject Range Query Range Percent Splice Strand
CG13856-RA 1..570 257..826 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:59:24 Download gff for IP06563.complete
Subject Subject Range Query Range Percent Splice Strand
CG13856-RA 1..570 257..826 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:22:51 Download gff for IP06563.complete
Subject Subject Range Query Range Percent Splice Strand
CG13856-RA 1..570 257..826 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:12:35 Download gff for IP06563.complete
Subject Subject Range Query Range Percent Splice Strand
CG13856-RA 75..943 1..869 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:15:00 Download gff for IP06563.complete
Subject Subject Range Query Range Percent Splice Strand
CG13856-RA 75..943 1..869 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:44:25 Download gff for IP06563.complete
Subject Subject Range Query Range Percent Splice Strand
CG13856-RA 75..943 1..869 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:59:24 Download gff for IP06563.complete
Subject Subject Range Query Range Percent Splice Strand
CG13856-RA 75..943 1..869 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:22:51 Download gff for IP06563.complete
Subject Subject Range Query Range Percent Splice Strand
CG13856-RA 75..943 1..869 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:05:53 Download gff for IP06563.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22402729..22402983 1..255 100 -> Plus
3R 22404446..22405059 256..869 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:05:53 Download gff for IP06563.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22402729..22402983 1..255 100 -> Plus
3R 22404446..22405059 256..869 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:05:53 Download gff for IP06563.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22402729..22402983 1..255 100 -> Plus
3R 22404446..22405059 256..869 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:44:25 Download gff for IP06563.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18228451..18228705 1..255 100 -> Plus
arm_3R 18230168..18230781 256..869 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:34:59 Download gff for IP06563.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22143560..22143814 1..255 100 -> Plus
3R 22145277..22145890 256..869 100   Plus

IP06563.pep Sequence

Translation from 256 to 825

> IP06563.pep
MSPLLPLASLIILANLVASRPYSYGPRAEAPPTRLANRIVVQSPSLDNLY
MDYVVTSKPLNLRKYNKNGSKTKKTKKDSKIYYIPVPPLPFRHIPGIGLD
YQPMKINPILHESESTTRKTTTVRPPTTTTSSPNLDHRNPSKVLRVQHLK
DYYFNGRPHRLQVAHADKKSGLTALNLKSNFYYNKNIIY*

IP06563.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:03:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18445-PA 188 GF18445-PA 15..188 15..189 675 82.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:03:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11130-PA 188 GG11130-PA 1..188 1..189 930 96.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:03:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20395-PA 208 GH20395-PA 51..208 37..189 478 66.2 Plus
Dgri\GH13355-PA 208 GH13355-PA 51..208 37..189 478 66.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:16:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG13856-PA 189 CG13856-PA 1..189 1..189 992 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:03:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22382-PA 238 GI22382-PA 70..238 25..189 441 67.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:03:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24211-PA 274 GL24211-PA 105..274 35..189 566 74.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:03:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12574-PB 221 GA12574-PB 52..221 35..189 554 73.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:03:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26428-PA 189 GM26428-PA 1..189 1..189 957 98.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:03:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20945-PA 189 GD20945-PA 1..189 1..189 961 98.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:03:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24415-PA 217 GJ24415-PA 51..217 32..189 484 63.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:03:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14266-PA 194 GK14266-PA 14..194 14..189 457 60.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:03:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10296-PA 188 GE10296-PA 1..188 1..189 813 95.2 Plus

IP06563.hyp Sequence

Translation from 256 to 825

> IP06563.hyp
MSPLLPLASLIILANLVASRPYSYGPRAEAPPTRLANRIVVQSPSLDNLY
MDYVVTSKPLNLRKYNKNGSKTKKTKKDSKIYYIPVPPLPFRHIPGIGLD
YQPMKINPILHESESTTRKTTTVRPPTTTTSSPNLDHRNPSKVLRVQHLK
DYYFNGRPHRLQVAHADKKSGLTALNLKSNFYYNKNIIY*

IP06563.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:44:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG13856-PA 189 CG13856-PA 1..189 1..189 992 100 Plus