Clone IP06621 Report

Search the DGRC for IP06621

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:66
Well:21
Vector:pOT2
Associated Gene/TranscriptCG12520-RB
Protein status:IP06621.pep: validated full length
Preliminary Size:603
Sequenced Size:1446

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12520 2005-01-01 Successful iPCR screen
CG12520 2008-04-29 Release 5.5 accounting
CG12520 2008-08-15 Release 5.9 accounting
CG12520 2008-12-18 5.12 accounting

Clone Sequence Records

IP06621.complete Sequence

1446 bp (1446 high quality bases) assembled on 2006-04-11

GenBank Submission: BT025137

> IP06621.complete
ACCCGGTAAAACTGGTTGTCTAACCAATTGCTGACTAGAACGTATCTAAT
CTGAGGGAAAATAACAATATTACTCATAACATAACATAACTTTCGACGCG
TCTTGGGCTTGCGATTGATTAGAATGGATATTCGTATACAGTGTTTTTTC
AATTGTTTCCGTAATGGGTCTCGCAAATATAGAAGAGCTCTACAACGACT
GTCTATACCATATATTTGACTTTTTGACCACTGAAGATCGCATTATTTTC
GCACAAGTATGCCATAGATTTCGTCAGCTTTTTATAAATCATTGTGCTGC
TAAATACCGCGTGTATACCCTCGATAAAGACAGTTCACGACTTGAACTGA
TACAATTTTGTATTTGTCGCGAGACAGTAGAGTGCTTGACCATTGACCTG
GATCACTTCGATACGGCTAGATGTTATAGAACCTATGGATGTGAAACTCC
AGAAAACTGTTTTCAAATTCTCTGCCAGACTTTGGCCGGTATGCTAAGGC
TAGAACATTTGGTAGTCAAGCAGGAATCGATGCTAGTTACACCGATTCAA
AAGCCATTCGATCAAATATTGACCGCCGTCAGACATTTGCCGAAGCTCAG
AAGATTGGAAATTCGTGCTAGAGACGCTAATTTTCGAACTATATAGACAG
CAGCTTCGACCGTGTAAGCCAACTTTGCCATCTCGAAGAATTGCAGATGC
TCGTCCCAAAAATTTCACTCGCAGCTCTGGTGAAATGTTGCAGGTCCAGT
GGCAATCTTCGCAGTCTTCATTTGGGCTATGCCTGCATACAGAAGAATTT
GAGCCACATAGTGCCGCATTGCAAGAACTTGAAGGTGCTCAAGTTTGGCA
TGCCCGCGAATTCTTCAGAATACGTGCAGCTGGCTAGGCTGCCGAAGCTG
GGGGAACTATCCTACTTTGGCATTCGCAGAAGCGGCTCCTTTGAACCACT
TCTCTCAGCTCTAGCTGCCAAATCTCAGTTGACACATCTGTCCATCGACG
GAGGGAGTCTTACTATGCAGGAGACCTGCCAGTTGGTTCGCATCCAGAGC
TTACGGCATTTCAAGGGCTTCTACTCAACGACTGACTGTGTGGAGATGCT
GGGTTGTCTGGCCAATCTGGAGGAGCTATGCGTCTCGATATTCTGCCCAA
CGGATATTTCCAATAATCTTCTGCCAATCATTGCAAAATGCAAAAATCTA
AAGCTTCTGCAAATTTCAGGAGGAAATGTCAATACAAAGTCCCTAAACGA
TGCTATTAGCCTTAGAAAATCTGAACCAGTTGCCTTAGTCTTAAAATAGA
TTAATAGATATATTTTCAATACACTTGTAGAAATCTTAAATTTTCAATTT
GAGATTAAAAAGTGCACTTCAAGTTGTAATCTGGCATTATTCAAGATAAT
ACATAAATATACGAGCCTAATTTTCTCAAAAAAAAAAAAAAAAAAA

IP06621.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:29:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG12520.a 1477 CG12520.a 41..1469 1..1429 7145 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:44:39
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 12891616..12892409 1427..626 3705 97.8 Minus
chr3L 24539361 chr3L 12892469..12893094 630..1 3010 98.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:49:15 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:44:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12901245..12902048 1429..626 4020 100 Minus
3L 28110227 3L 12902108..12902737 630..1 3135 99.8 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:20:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 12894345..12895148 1429..626 4020 100 Minus
3L 28103327 3L 12895208..12895837 630..1 3135 99.8 Minus
Blast to na_te.dros performed on 2019-03-15 15:44:37 has no hits.

IP06621.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:45:19 Download gff for IP06621.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 12891616..12892408 627..1427 97 <- Minus
chr3L 12892473..12893094 1..626 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:30:20 Download gff for IP06621.complete
Subject Subject Range Query Range Percent Splice Strand
CG12520-RB 1..448 164..611 100 == Plus
CG12520-RB 449..1116 633..1299 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:51:53 Download gff for IP06621.complete
Subject Subject Range Query Range Percent Splice Strand
CG12520-RB 1..448 164..611 100 == Plus
CG12520-RB 449..1116 633..1299 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:38:33 Download gff for IP06621.complete
Subject Subject Range Query Range Percent Splice Strand
CG12520-RB 1..448 164..611 100 == Plus
CG12520-RB 449..1116 633..1299 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:32:34 Download gff for IP06621.complete
Subject Subject Range Query Range Percent Splice Strand
CG12520-RB 1..448 164..611 100 == Plus
CG12520-RB 449..1116 633..1299 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:14:26 Download gff for IP06621.complete
Subject Subject Range Query Range Percent Splice Strand
CG12520-RB 1..448 164..611 100 == Plus
CG12520-RB 449..1116 633..1299 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:26:08 Download gff for IP06621.complete
Subject Subject Range Query Range Percent Splice Strand
CG12520-RB 1..448 164..611 100 == Plus
CG12520-RB 449..1116 633..1299 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:51:53 Download gff for IP06621.complete
Subject Subject Range Query Range Percent Splice Strand
CG12520-RB 1..448 164..611 100 == Plus
CG12520-RB 449..1116 633..1299 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:38:33 Download gff for IP06621.complete
Subject Subject Range Query Range Percent Splice Strand
CG12520-RC 1..1427 1..1427 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:32:34 Download gff for IP06621.complete
Subject Subject Range Query Range Percent Splice Strand
CG12520-RB 1..448 164..611 100 == Plus
CG12520-RB 449..1116 633..1299 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:14:26 Download gff for IP06621.complete
Subject Subject Range Query Range Percent Splice Strand
CG12520-RC 1..1427 1..1427 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:45:19 Download gff for IP06621.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12901247..12902047 627..1427 100 <- Minus
3L 12902112..12902737 1..626 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:45:19 Download gff for IP06621.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12901247..12902047 627..1427 100 <- Minus
3L 12902112..12902737 1..626 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:45:19 Download gff for IP06621.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12901247..12902047 627..1427 100 <- Minus
3L 12902112..12902737 1..626 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:38:33 Download gff for IP06621.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12894347..12895147 627..1427 100 <- Minus
arm_3L 12895212..12895837 1..626 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:11:06 Download gff for IP06621.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12894347..12895147 627..1427 100 <- Minus
3L 12895212..12895837 1..626 100   Minus

IP06621.pep Sequence

Translation from 696 to 1298

> IP06621.pep
MLVPKISLAALVKCCRSSGNLRSLHLGYACIQKNLSHIVPHCKNLKVLKF
GMPANSSEYVQLARLPKLGELSYFGIRRSGSFEPLLSALAAKSQLTHLSI
DGGSLTMQETCQLVRIQSLRHFKGFYSTTDCVEMLGCLANLEELCVSIFC
PTDISNNLLPIIAKCKNLKLLQISGGNVNTKSLNDAISLRKSEPVALVLK
*

IP06621.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 14:04:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10678-PA 674 GF10678-PA 102..254 1..153 508 62.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 14:04:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13798-PA 196 GG13798-PA 3..195 8..200 889 87.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 14:04:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14484-PA 390 GH14484-PA 174..369 3..194 385 43.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:47:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG12520-PB 371 CG12520-PB 172..371 1..200 1021 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 14:04:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13640-PA 389 GI13640-PA 171..355 1..185 454 48.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 14:04:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24876-PA 1153 GL24876-PA 936..1133 3..200 571 56.1 Plus
Dper\GL19369-PA 1003 GL19369-PA 175..339 6..164 183 32.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 14:04:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11675-PA 391 GA11675-PA 174..371 3..200 578 56.6 Plus
Dpse\GA25938-PA 1140 GA25938-PA 175..339 6..164 179 32.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 14:04:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24623-PA 372 GM24623-PA 173..372 1..200 983 94 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 14:04:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12690-PA 278 GD12690-PA 123..258 1..136 675 94.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 14:04:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17146-PA 228 GJ17146-PA 1..204 1..200 458 48.5 Plus
Dvir\GJ11299-PA 336 GJ11299-PA 112..297 5..186 194 29.6 Plus
Dvir\GJ13001-PA 412 GJ13001-PA 173..365 2..191 176 31.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 14:04:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20089-PA 262 GE20089-PA 63..261 1..200 905 87 Plus

IP06621.hyp Sequence

Translation from 696 to 1298

> IP06621.hyp
MLVPKISLAALVKCCRSSGNLRSLHLGYACIQKNLSHIVPHCKNLKVLKF
GMPANSSEYVQLARLPKLGELSYFGIRRSGSFEPLLSALAAKSQLTHLSI
DGGSLTMQETCQLVRIQSLRHFKGFYSTTDCVEMLGCLANLEELCVSIFC
PTDISNNLLPIIAKCKNLKLLQISGGNVNTKSLNDAISLRKSEPVALVLK
*

IP06621.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:58:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG12520-PB 371 CG12520-PB 172..371 1..200 1021 100 Plus