Clone IP06716 Report

Search the DGRC for IP06716

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:67
Well:16
Vector:pOT2
Associated Gene/TranscriptCG12231-RA
Protein status:IP06716.pep: gold
Preliminary Size:558
Sequenced Size:731

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12231 2005-01-01 Successful iPCR screen
CG12231 2008-04-29 Release 5.5 accounting
CG12231 2008-08-15 Release 5.9 accounting
CG12231 2008-12-18 5.12 accounting

Clone Sequence Records

IP06716.complete Sequence

731 bp assembled on 2006-11-09

GenBank Submission: BT023599

> IP06716.complete
CGAGACCAAATCAACTCAACTCCACGTATTTAAATTCAAAGTGTCCTTCC
CAACTCCTGACGTTCGTGGAGTCCAGTCAGCGTTTGCGTTATCCGATTTT
ATTATTCTTCTTCTACCGTAAAATGTTCCTGAATGCCCTGCGAAGGATGC
GCTGCCTGTGCGGCGACAGGGAGATCAGTACCGAAGACATTGAACAGAGG
GAGCCGGTAATGCTGAACATCTACGACCTGTCCACCAGCAACAACTACAC
TTTTCCGCTGGGCTTGGGTGTCTTCCATTCCGGCGTCCAGTTGTACGGGC
GAGAGTACGCATTTTTGGCGCTCAATCTCTCCATTTCCGGCATCTTTGAG
ATTCATCCCTGCAATGGGCAGGAGGAGTTGGGCGAACACTTCCGTTTCCG
GAAGAGCATTCTGCTCGGCTACACCGACTTTACCTGCGCTGAAGTGAAGC
GCGTTATCAACCTGCTGGGCTTCGAGTTCCGCGGGACCAGCTACCACTTG
ACCAGCAAGAATTGCAACCACTTCTCCAACTGCCTGGCGCATCTCGTCTG
TGGCCGTAAAATTCCGCGTTGGGTCAACCGCCTGGCCTACCTCATAACGT
GTGTCCCATTCCTCGAACGCTTTGTGGTCTCCAGTCCATCACATTACCCT
CACTTCCGTCAATTTCAGCTCTAATCTTATACACATATATATATATATAT
AGATATCGCTTGAAAAAAAAAAAAAAAAAAA

IP06716.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:49:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG12231-RA 708 CG12231-RA 1..708 5..712 3540 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:08:56
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 19419842..19420549 712..5 3525 99.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:49:24 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:08:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19531030..19531739 714..5 3550 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:08:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 19539128..19539837 714..5 3550 100 Minus
Blast to na_te.dros performed on 2019-03-16 11:08:54 has no hits.

IP06716.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:10:04 Download gff for IP06716.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 19419842..19420551 1..712 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:30:28 Download gff for IP06716.complete
Subject Subject Range Query Range Percent Splice Strand
CG12231-RA 1..552 123..674 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:44:07 Download gff for IP06716.complete
Subject Subject Range Query Range Percent Splice Strand
CG12231-RA 1..552 123..674 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:08:15 Download gff for IP06716.complete
Subject Subject Range Query Range Percent Splice Strand
CG12231-RA 1..552 123..674 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:24:50 Download gff for IP06716.complete
Subject Subject Range Query Range Percent Splice Strand
CG12231-RA 1..552 123..674 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:28:24 Download gff for IP06716.complete
Subject Subject Range Query Range Percent Splice Strand
CG12231-RA 1..552 123..674 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:52:03 Download gff for IP06716.complete
Subject Subject Range Query Range Percent Splice Strand
CG12231-RA 1..558 123..680 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:44:07 Download gff for IP06716.complete
Subject Subject Range Query Range Percent Splice Strand
CG12231-RA 1..711 1..712 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:08:15 Download gff for IP06716.complete
Subject Subject Range Query Range Percent Splice Strand
CG12231-RA 1..711 1..712 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:24:50 Download gff for IP06716.complete
Subject Subject Range Query Range Percent Splice Strand
CG12231-RA 1..558 123..680 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:28:24 Download gff for IP06716.complete
Subject Subject Range Query Range Percent Splice Strand
CG12231-RA 1..711 1..712 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:10:04 Download gff for IP06716.complete
Subject Subject Range Query Range Percent Splice Strand
X 19531032..19531741 1..712 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:10:04 Download gff for IP06716.complete
Subject Subject Range Query Range Percent Splice Strand
X 19531032..19531741 1..712 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:10:04 Download gff for IP06716.complete
Subject Subject Range Query Range Percent Splice Strand
X 19531032..19531741 1..712 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:08:15 Download gff for IP06716.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19425065..19425774 1..712 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:57:56 Download gff for IP06716.complete
Subject Subject Range Query Range Percent Splice Strand
X 19539130..19539839 1..712 99   Minus

IP06716.hyp Sequence

Translation from 0 to 673

> IP06716.hyp
QPNQLNSTYLNSKCPSQLLTFVESSQRLRYPILLFFFYRKMFLNALRRMR
CLCGDREISTEDIEQREPVMLNIYDLSTSNNYTFPLGLGVFHSGVQLYGR
EYAFLALNLSISGIFEIHPCNGQEELGEHFRFRKSILLGYTDFTCAEVKR
VINLLGFEFRGTSYHLTSKNCNHFSNCLAHLVCGRKIPRWVNRLAYLITC
VPFLERFVVSSPSHYPHFRQFQL*

IP06716.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:59:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG12231-PA 183 CG12231-PA 1..183 41..223 987 100 Plus
CG7222-PB 205 CG7222-PB 24..175 54..206 426 50.3 Plus
CG7222-PA 205 CG7222-PA 24..175 54..206 426 50.3 Plus

IP06716.pep Sequence

Translation from 122 to 673

> IP06716.pep
MFLNALRRMRCLCGDREISTEDIEQREPVMLNIYDLSTSNNYTFPLGLGV
FHSGVQLYGREYAFLALNLSISGIFEIHPCNGQEELGEHFRFRKSILLGY
TDFTCAEVKRVINLLGFEFRGTSYHLTSKNCNHFSNCLAHLVCGRKIPRW
VNRLAYLITCVPFLERFVVSSPSHYPHFRQFQL*

IP06716.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:33:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13777-PA 205 GF13777-PA 24..175 14..166 422 50.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:33:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18051-PA 187 GG18051-PA 1..182 1..182 699 72 Plus
Dere\GG20150-PA 205 GG20150-PA 24..175 14..166 424 50.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:33:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20459-PA 203 GH20459-PA 22..173 14..166 423 51 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:06:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG12231-PA 183 CG12231-PA 1..183 1..183 987 100 Plus
CG7222-PB 205 CG7222-PB 24..175 14..166 426 50.3 Plus
CG7222-PA 205 CG7222-PA 24..175 14..166 426 50.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:33:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16096-PA 183 GI16096-PA 3..173 1..166 478 51.5 Plus
Dmoj\GI18885-PA 203 GI18885-PA 22..173 14..166 422 51 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:33:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17308-PA 205 GL17308-PA 24..175 14..166 424 50.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:33:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20191-PA 205 GA20191-PA 24..175 14..166 424 50.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:33:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22738-PA 98 GM22738-PA 1..98 9..112 430 81.7 Plus
Dsec\GM21239-PA 205 GM21239-PA 24..175 14..166 424 50.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:33:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15578-PA 175 GD15578-PA 1..175 9..183 809 86.9 Plus
Dsim\GD10757-PA 205 GD10757-PA 24..175 14..166 424 50.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:33:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15744-PA 183 GJ15744-PA 3..173 1..166 480 50.9 Plus
Dvir\GJ21920-PA 203 GJ21920-PA 22..173 14..166 419 50.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:33:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25835-PA 180 GK25835-PA 1..172 1..166 508 55.8 Plus
Dwil\GK20666-PA 205 GK20666-PA 24..175 14..166 421 50.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:33:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17382-PA 186 GE17382-PA 2..181 3..182 705 72.2 Plus
Dyak\GE12839-PA 205 GE12839-PA 24..175 14..166 424 50.3 Plus