Clone IP06839 Report

Search the DGRC for IP06839

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:68
Well:39
Vector:pOT2
Associated Gene/TranscriptCG15317-RA
Protein status:IP06839.pep: gold
Preliminary Size:582
Sequenced Size:816

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15317 2005-01-01 Successful iPCR screen
CG15317 2008-04-29 Release 5.5 accounting
CG15317 2008-08-15 Release 5.9 accounting
CG15317 2008-12-18 5.12 accounting

Clone Sequence Records

IP06839.complete Sequence

816 bp (816 high quality bases) assembled on 2006-06-06

GenBank Submission: BT025910

> IP06839.complete
ATTCCCTCAATTTACCTAAATTGTACTGCATTGTTGCGATGCTATTGTCA
GAGGATCGCTTGGAGCACTACAAAACCAGTTTGGAGCAGCAGTTAAAGCA
TTTGGCCACCACCATAAGGAGCTATCTATGCCTTAAGTCTGCGACGACGC
CTCAATTGTCGAACCAAGCGAATCGGTTGTGGGAATTGGGCCAACGTTAT
CGACTGGTCACGGGTTCCAATCAAGTTGCCACATTTGCGCTTCTTTCGGT
GTGCCACGATGTTTACCGTAGCCTGCAGGACAGCATATCGAAACTGGTTT
CCGAGCTAGGGCAGATATCCGCCCAAGTAACTGACTTCGAGATTGAGTGC
CTGCACCTATGTAATGAGCAGCAGCAAACCAAAACACCTGCAGCATTGAC
AGAATTCAGAAATTTCCTGGAGGAATCGCTGAAACTGCTGCAGAACCAGG
TTAAATACCTAGAGCTTCATCTTAGTCAGCTGCAACCCAAGTTTTCCGCA
CCCGAATCCTCGTTGGAGTCCTTCAAATCCGATCTCCAACTGCCGGAACC
TGCAGAAGCACGCATTACCCTTGGATTGGCCAAAATAGAGAGACTGTCCA
GTTTTCCGCTGACTTTGTAGGGAAAATTAGGCTTAAGGAATATAGAAACA
TATGCACCTCAGTGGTTTTAAACCATAATTTGCTATACAATGTTTTATAT
ATTAACTAACTGAGCTATTGACTTTTATTATAAAAATGTTACGTATATTT
TCTGTGCAGCTCCAGCAGTTCAAATATTTAAACTATTTTTTATACAAAAA
AAAAAAAAAAAAAAAA

IP06839.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:13:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG15317-RA 917 CG15317-RA 116..916 1..801 4005 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:08:10
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 9447320..9447828 795..287 2545 100 Minus
chrX 22417052 chrX 9448014..9448227 214..1 1070 100 Minus
chrX 22417052 chrX 9447888..9447960 286..214 365 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:49:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:08:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9555601..9556115 801..287 2575 100 Minus
X 23542271 X 9556301..9556514 214..1 1070 100 Minus
X 23542271 X 9556175..9556247 286..214 365 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:07:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 9563699..9564213 801..287 2575 100 Minus
X 23527363 X 9564399..9564612 214..1 1070 100 Minus
X 23527363 X 9564273..9564345 286..214 365 100 Minus
Blast to na_te.dros performed on 2019-03-16 15:08:09 has no hits.

IP06839.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:09:12 Download gff for IP06839.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 9447320..9447828 287..795 100 <- Minus
chrX 9447888..9447959 215..286 100 <- Minus
chrX 9448014..9448227 1..214 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:30:47 Download gff for IP06839.complete
Subject Subject Range Query Range Percent Splice Strand
CG15317-RA 1..582 39..620 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:22:03 Download gff for IP06839.complete
Subject Subject Range Query Range Percent Splice Strand
CG15317-RA 1..582 39..620 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:04:37 Download gff for IP06839.complete
Subject Subject Range Query Range Percent Splice Strand
CG15317-RA 1..582 39..620 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:40:27 Download gff for IP06839.complete
Subject Subject Range Query Range Percent Splice Strand
CG15317-RA 1..582 39..620 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:36:27 Download gff for IP06839.complete
Subject Subject Range Query Range Percent Splice Strand
CG15317-RA 1..582 39..620 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:50:25 Download gff for IP06839.complete
Subject Subject Range Query Range Percent Splice Strand
CG15317-RA 31..825 1..795 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:22:03 Download gff for IP06839.complete
Subject Subject Range Query Range Percent Splice Strand
CG15317-RA 31..825 1..795 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:04:37 Download gff for IP06839.complete
Subject Subject Range Query Range Percent Splice Strand
CG15317-RA 31..825 1..795 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:40:27 Download gff for IP06839.complete
Subject Subject Range Query Range Percent Splice Strand
CG15317-RA 31..825 1..795 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:36:27 Download gff for IP06839.complete
Subject Subject Range Query Range Percent Splice Strand
CG15317-RA 31..825 1..795 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:09:12 Download gff for IP06839.complete
Subject Subject Range Query Range Percent Splice Strand
X 9555607..9556115 287..795 100 <- Minus
X 9556175..9556246 215..286 100 <- Minus
X 9556301..9556514 1..214 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:09:12 Download gff for IP06839.complete
Subject Subject Range Query Range Percent Splice Strand
X 9555607..9556115 287..795 100 <- Minus
X 9556175..9556246 215..286 100 <- Minus
X 9556301..9556514 1..214 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:09:12 Download gff for IP06839.complete
Subject Subject Range Query Range Percent Splice Strand
X 9555607..9556115 287..795 100 <- Minus
X 9556175..9556246 215..286 100 <- Minus
X 9556301..9556514 1..214 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:04:37 Download gff for IP06839.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9449640..9450148 287..795 100 <- Minus
arm_X 9450208..9450279 215..286 100 <- Minus
arm_X 9450334..9450547 1..214 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:50:30 Download gff for IP06839.complete
Subject Subject Range Query Range Percent Splice Strand
X 9563705..9564213 287..795 100 <- Minus
X 9564273..9564344 215..286 100 <- Minus
X 9564399..9564612 1..214 100   Minus

IP06839.hyp Sequence

Translation from 2 to 619

> IP06839.hyp
SLNLPKLYCIVAMLLSEDRLEHYKTSLEQQLKHLATTIRSYLCLKSATTP
QLSNQANRLWELGQRYRLVTGSNQVATFALLSVCHDVYRSLQDSISKLVS
ELGQISAQVTDFEIECLHLCNEQQQTKTPAALTEFRNFLEESLKLLQNQV
KYLELHLSQLQPKFSAPESSLESFKSDLQLPEPAEARITLGLAKIERLSS
FPLTL*

IP06839.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:02:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG15317-PA 193 CG15317-PA 1..193 13..205 966 100 Plus

IP06839.pep Sequence

Translation from 38 to 619

> IP06839.pep
MLLSEDRLEHYKTSLEQQLKHLATTIRSYLCLKSATTPQLSNQANRLWEL
GQRYRLVTGSNQVATFALLSVCHDVYRSLQDSISKLVSELGQISAQVTDF
EIECLHLCNEQQQTKTPAALTEFRNFLEESLKLLQNQVKYLELHLSQLQP
KFSAPESSLESFKSDLQLPEPAEARITLGLAKIERLSSFPLTL*

IP06839.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:07:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21793-PA 191 GF21793-PA 1..189 2..193 267 34.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:07:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18973-PA 194 GG18973-PA 1..194 1..193 881 90.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:07:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11831-PA 344 GH11831-PA 206..331 61..185 159 35.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:22:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG15317-PA 193 CG15317-PA 1..193 1..193 966 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:07:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14399-PA 195 GI14399-PA 1..188 1..187 274 37 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:07:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13127-PA 195 GL13127-PA 1..192 1..191 311 39.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:07:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13643-PA 195 GA13643-PA 1..192 1..191 305 38.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:07:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11360-PA 193 GM11360-PA 1..193 1..193 873 88.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:07:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16960-PA 193 GD16960-PA 1..193 1..193 877 88.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:08:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18743-PA 197 GJ18743-PA 1..195 1..193 297 38.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:08:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25546-PA 233 GK25546-PA 1..142 1..143 245 40.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:08:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15446-PA 193 GE15446-PA 1..193 1..193 876 89.6 Plus