Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
IP07226.complete Sequence
895 bp (895 high quality bases) assembled on 2006-09-20
GenBank Submission: BT029063
> IP07226.complete
TCTGGAGCACAACTCGTTTCGGAAAAATACAAATTTCAAAAAGCACACAA
AATTCATAGTAAAGCGACGGAAATTTATTGGTTAGCTTTCCGTGTTATAA
ACATCAACACAAACACATACAGATAGTGCAGGACAAACAGATATAAGACA
AATAAATACTGGATACATACACGAAATCCGTGCAGTTGGAGATACAAACA
ACTAGCTGCCGCTACCGCAGTTATAAAATAATCACATGTGCCATCACATC
TACTGGATTCCCATCCCATCCCAAATTATTTAATGCGCTTATCCAAAATG
CAAACTAATGATGATCGTTCCGCCTACACTGCCTTAATTAAGTCTGAACA
AGCTAGGATAGTTGAAATGGTGTTCAATTCGATGGTACCAGTCCCGTTGG
ACGAGAGGATTGCATCGTTTTGGATACAAATGTTGCGCTTACAATCAATG
CAAGCCATAGAAGCCTACTCTTCATACACTATGTTAATAAGCCATCTTAT
GATCAGTTGGTTTATCTCAAATGCAAACTACTAAAGATCGTTCCGCCTAC
ACTGCCTTAATTAACAGTCTGAACAAGCAAGGATAGATGAAATGGTTTTC
AATTCGATGGCACCGGTCCCGTTGGACGAGAGGATTGCATCGGTTTGGAT
ATAAATGTTGCTCTAATATTCAATGCTAACATTTTGCTGCCTTTCCCTCA
TCCCATACCTTACTGGATCGCATCGCCTGCCTAGGATCAGTTGGATTGGC
TGAAATCGATCTTGTTTAACTGTACTATCATGTGAAATTGCAATAATCAT
ACTGCACACTTCCGGTCCCAAATGCTCAACATTCACATTTCGCTTGTTTT
TGTCTTAATAAACGGAGTTCAACGAACGTAAAAAAAAAAAAAAAA
IP07226.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 17:15:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32652-RA | 905 | CG32652-RA | 19..899 | 1..881 | 4405 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:37:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chrX | 22417052 | chrX | 12301981..12302275 | 879..585 | 1460 | 99.7 | Minus |
chrX | 22417052 | chrX | 12302333..12302555 | 582..360 | 1115 | 100 | Minus |
chrX | 22417052 | chrX | 12302608..12302783 | 361..188 | 815 | 98.9 | Minus |
chrX | 22417052 | chrX | 12302839..12302958 | 189..70 | 600 | 100 | Minus |
chrX | 22417052 | chrX | 12303069..12303138 | 70..1 | 350 | 100 | Minus |
chrX | 22417052 | chrX | 12302464..12302552 | 676..588 | 310 | 89.9 | Minus |
chrX | 22417052 | chrX | 12302184..12302272 | 451..363 | 295 | 88.8 | Minus |
chrX | 22417052 | chrX | 12302608..12302682 | 586..512 | 285 | 92 | Minus |
chrX | 22417052 | chrX | 11809737..11809806 | 70..1 | 230 | 88.6 | Minus |
chrX | 22417052 | chrX | 14297099..14297160 | 433..372 | 205 | 88.7 | Minus |
chrX | 22417052 | chrX | 12302333..12302403 | 357..289 | 200 | 88.7 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 17:51:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CR32661-RA | 654 | CR32661-RA | 15..93 | 1..79 | 260 | 88.6 | Plus |
CR32661-RA | 654 | CR32661-RA | 558..599 | 381..422 | 150 | 90.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:37:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12411016..12411312 | 881..585 | 1485 | 100 | Minus |
X | 23542271 | X | 12411365..12411591 | 586..360 | 1135 | 100 | Minus |
X | 23542271 | X | 12411644..12411817 | 361..188 | 870 | 100 | Minus |
X | 23542271 | X | 12411873..12411992 | 189..70 | 600 | 100 | Minus |
X | 23542271 | X | 12412103..12412172 | 70..1 | 350 | 100 | Minus |
X | 23542271 | X | 12411221..12411309 | 451..363 | 310 | 89.9 | Minus |
X | 23542271 | X | 12411500..12411588 | 676..588 | 310 | 89.9 | Minus |
X | 23542271 | X | 11918595..11918664 | 70..1 | 230 | 88.6 | Minus |
X | 23542271 | X | 12411644..12411716 | 586..512 | 220 | 89.3 | Minus |
X | 23542271 | X | 12411365..12411439 | 361..289 | 220 | 89.3 | Minus |
X | 23542271 | X | 14406502..14406563 | 433..372 | 190 | 87.1 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:09:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23527363 | X | 12419114..12419410 | 881..585 | 1485 | 100 | Minus |
X | 23527363 | X | 12419463..12419689 | 586..360 | 1135 | 100 | Minus |
X | 23527363 | X | 12419742..12419915 | 361..188 | 870 | 100 | Minus |
X | 23527363 | X | 12419971..12420090 | 189..70 | 600 | 100 | Minus |
X | 23527363 | X | 12420201..12420270 | 70..1 | 350 | 100 | Minus |
X | 23527363 | X | 12419598..12419686 | 676..588 | 310 | 89.8 | Minus |
X | 23527363 | X | 12419319..12419407 | 451..363 | 310 | 89.8 | Minus |
X | 23527363 | X | 12419742..12419814 | 586..512 | 230 | 89.3 | Minus |
X | 23527363 | X | 12419463..12419537 | 361..289 | 230 | 89.3 | Minus |
X | 23527363 | X | 11926693..11926762 | 70..1 | 230 | 88.5 | Minus |
X | 23527363 | X | 14414600..14414661 | 433..372 | 190 | 87 | Minus |
X | 23527363 | X | 11925959..11926000 | 422..381 | 150 | 90.4 | Minus |
Blast to na_te.dros performed 2019-03-16 10:37:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbuz\ISBu3 | 993 | Dbuz\ISBu3 ISBU3 993bp | 390..431 | 17..60 | 124 | 81.8 | Plus |
IP07226.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:37:52 Download gff for
IP07226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chrX | 12302840..12302942 | 86..188 | 100 | <- | Minus |
chrX | 12301981..12302273 | 587..879 | 99 | <- | Minus |
chrX | 12302328..12302553 | 362..586 | 99 | <- | Minus |
chrX | 12302608..12302782 | 189..361 | 98 | <- | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:32:01 Download gff for
IP07226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32652-RA | 1..252 | 283..534 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:26:47 Download gff for
IP07226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32652-RA | 1..252 | 283..534 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:02:52 Download gff for
IP07226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32652-RA | 1..252 | 283..534 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:46:58 Download gff for
IP07226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32652-RA | 1..252 | 283..534 | 100 | | Plus |
Sim4 to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:51:28 has no hits.
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:55:25 Download gff for
IP07226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32652-RA | 10..846 | 1..837 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:26:47 Download gff for
IP07226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32652-RA | 10..846 | 1..837 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:02:52 Download gff for
IP07226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32652-RA | 10..888 | 1..879 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:46:59 Download gff for
IP07226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32652-RA | 10..846 | 1..837 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:37:52 Download gff for
IP07226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12411874..12411991 | 71..188 | 100 | <- | Minus |
X | 12411018..12411310 | 587..879 | 100 | <- | Minus |
X | 12411365..12411589 | 362..586 | 100 | <- | Minus |
X | 12411644..12411816 | 189..361 | 100 | <- | Minus |
X | 12412103..12412172 | 1..70 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:37:52 Download gff for
IP07226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12411874..12411991 | 71..188 | 100 | <- | Minus |
X | 12411018..12411310 | 587..879 | 100 | <- | Minus |
X | 12411365..12411589 | 362..586 | 100 | <- | Minus |
X | 12411644..12411816 | 189..361 | 100 | <- | Minus |
X | 12412103..12412172 | 1..70 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:37:52 Download gff for
IP07226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12411874..12411991 | 71..188 | 100 | <- | Minus |
X | 12411018..12411310 | 587..879 | 100 | <- | Minus |
X | 12411365..12411589 | 362..586 | 100 | <- | Minus |
X | 12411644..12411816 | 189..361 | 100 | <- | Minus |
X | 12412103..12412172 | 1..70 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:02:52 Download gff for
IP07226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12305051..12305343 | 587..879 | 100 | <- | Minus |
arm_X | 12305398..12305622 | 362..586 | 100 | <- | Minus |
arm_X | 12305677..12305849 | 189..361 | 100 | <- | Minus |
arm_X | 12305907..12306024 | 71..188 | 100 | <- | Minus |
arm_X | 12306136..12306205 | 1..70 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:53:32 Download gff for
IP07226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12419742..12419914 | 189..361 | 100 | <- | Minus |
X | 12419972..12420089 | 71..188 | 100 | <- | Minus |
X | 12420201..12420270 | 1..70 | 100 | | Minus |
X | 12419116..12419408 | 587..879 | 100 | <- | Minus |
X | 12419463..12419687 | 362..586 | 100 | <- | Minus |
IP07226.hyp Sequence
Translation from 282 to 533
> IP07226.hyp
MRLSKMQTNDDRSAYTALIKSEQARIVEMVFNSMVPVPLDERIASFWIQM
LRLQSMQAIEAYSSYTMLISHLMISWFISNANY*
Sequence IP07226.hyp has no blast hits.
IP07226.pep Sequence
Translation from 282 to 533
> IP07226.pep
MRLSKMQTNDDRSAYTALIKSEQARIVEMVFNSMVPVPLDERIASFWIQM
LRLQSMQAIEAYSSYTMLISHLMISWFISNANY*
Sequence IP07226.pep has no blast hits.