Clone IP08034 Report

Search the DGRC for IP08034

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:80
Well:34
Vector:pOT2
Associated Gene/Transcriptaust-RA
Protein status:IP08034.pep: gold
Preliminary Size:651
Sequenced Size:1033

Clone Sequence Records

IP08034.complete Sequence

1033 bp assembled on 2011-09-01

GenBank Submission: BT128872.1

> IP08034.complete
ATTAGTTGACTGGAATATATAAATCGTTAGAAATATGCCTCGCACCAAGA
TTACAGCTCGTCGTCAGGCCCAGCGCCAGAAGGCTGATCGCGAAGAGAAA
GTGCGCCTGTCCCAAATCAAAATGGATTCGGCTCTGGAGAAGATCGATGA
GATGAGCAAGCGCTACAAGCAAGAGGTGGACAACCAAATTAAGGTGATCC
GTGGTAGGACTGATAAGCAGCTACTGCAAATGAAGATGCCAGAATTCTTG
GCTCTCGGGTTTAAGACTTTTGCCGAATTTCAGAGGGCAGCTATTAAGCC
GCCCACAACTCGCAGTTTGTCCATCAGTCGTGGTCGAACACGAACTCCGC
AGAATGCCCTGCCACCGAGGCTTCAGGCGCATTCGGTGGACAGGGCTCTG
AGTGGCGACACCATGAGCTTTGTGCGATGGCCCCGCGCCGGAGAGATGGT
GCTCTCGAAGGCGGGAAGCCCGCTGGCCGTCCAGATGCGTCCGGATCGCT
ATGCGGACGTCCACATTCCCACCAGGGGCGGCGTGATCACCGTGAAACCG
CACAAGATCAACACCGTGAAGCGGGAAGTACTGATGCAGCTGGATGAGAA
CACACTCAACCAGGTGAAGACACTGAATGCCAATCTCGGATTAATTGTGG
ACATGGCCAACAAACTGGGCAAATTGAAACCGTAATTGCTAGCTATCATA
GGAAACTTTAAGAACGCGTCTATTACGCTTATTTCGTTAATATTTTATTT
AGTCTTTTTCATTTTCTCATTTTCAATGTTTTTGTTCAGTTGTTAAACAT
TAAGTGAACGTGTCTGTTGTTCTTGTTGCTGTTTGCTGCTTTTTGCTTGC
TTCTTGTTGTATAATTAATTAATAAATTTAATTAATTGTATGTATATATA
TATATATATATATATCGATTTGTAAGTACGTACAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

IP08034.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 10:59:24
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 9248983..9249620 929..288 3100 99.2 Minus
chr2L 23010047 chr2L 9249684..9249973 290..1 1375 98.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 10:59:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9250048..9250689 929..288 3210 100 Minus
2L 23513712 2L 9250753..9251042 290..1 1450 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:01:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9250048..9250689 929..288 3210 100 Minus
2L 23513712 2L 9250753..9251042 290..1 1450 100 Minus
Blast to na_te.dros performed on 2019-03-15 10:59:22 has no hits.

IP08034.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 11:00:46 Download gff for IP08034.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 9249053..9249617 291..859 99 <- Minus
chr2L 9249684..9249973 1..290 98   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-09-01 09:26:43 Download gff for IP08034.complete
Subject Subject Range Query Range Percent Splice Strand
aust-RA 1..651 35..685 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:31:55 Download gff for IP08034.complete
Subject Subject Range Query Range Percent Splice Strand
aust-RA 1..651 35..685 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:18:13 Download gff for IP08034.complete
Subject Subject Range Query Range Percent Splice Strand
aust-RA 1..651 35..685 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-01 09:26:43 Download gff for IP08034.complete
Subject Subject Range Query Range Percent Splice Strand
aust-RA 1..889 1..889 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:31:55 Download gff for IP08034.complete
Subject Subject Range Query Range Percent Splice Strand
aust-RB 1..929 1..929 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:18:13 Download gff for IP08034.complete
Subject Subject Range Query Range Percent Splice Strand
aust-RB 1..929 1..929 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:00:46 Download gff for IP08034.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9250044..9250686 291..933 99 <- Minus
2L 9250753..9251042 1..290 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:00:46 Download gff for IP08034.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9250044..9250686 291..933 99 <- Minus
2L 9250753..9251042 1..290 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:00:46 Download gff for IP08034.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9250044..9250686 291..933 99 <- Minus
2L 9250753..9251042 1..290 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:31:55 Download gff for IP08034.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9250044..9250686 291..933 99 <- Minus
arm_2L 9250753..9251042 1..290 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:47:38 Download gff for IP08034.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9250044..9250686 291..933 99 <- Minus
2L 9250753..9251042 1..290 100   Minus

IP08034.hyp Sequence

Translation from 34 to 684

> IP08034.hyp
MPRTKITARRQAQRQKADREEKVRLSQIKMDSALEKIDEMSKRYKQEVDN
QIKVIRGRTDKQLLQMKMPEFLALGFKTFAEFQRAAIKPPTTRSLSISRG
RTRTPQNALPPRLQAHSVDRALSGDTMSFVRWPRAGEMVLSKAGSPLAVQ
MRPDRYADVHIPTRGGVITVKPHKINTVKREVLMQLDENTLNQVKTLNAN
LGLIVDMANKLGKLKP*

IP08034.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:16:44
Subject Length Description Subject Range Query Range Score Percent Strand
aust-PB 216 CG17009-PB 1..216 1..216 1086 100 Plus
aust-PA 216 CG17009-PA 1..216 1..216 1086 100 Plus
borr-PA 315 CG4454-PA 175..311 88..210 236 41.4 Plus
borr-PB 319 CG4454-PB 179..315 88..210 236 41.4 Plus
borr-PA 315 CG4454-PA 1..99 1..98 178 41 Plus
borr-PB 319 CG4454-PB 1..99 1..98 178 41 Plus

IP08034.pep Sequence

Translation from 34 to 684

> IP08034.pep
MPRTKITARRQAQRQKADREEKVRLSQIKMDSALEKIDEMSKRYKQEVDN
QIKVIRGRTDKQLLQMKMPEFLALGFKTFAEFQRAAIKPPTTRSLSISRG
RTRTPQNALPPRLQAHSVDRALSGDTMSFVRWPRAGEMVLSKAGSPLAVQ
MRPDRYADVHIPTRGGVITVKPHKINTVKREVLMQLDENTLNQVKTLNAN
LGLIVDMANKLGKLKP*

IP08034.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 19:32:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22049-PA 218 GF22049-PA 1..218 1..214 629 59.5 Plus
Dana\GF22038-PA 318 GF22038-PA 191..316 97..212 257 41.9 Plus
Dana\GF22038-PA 318 GF22038-PA 1..81 1..82 155 41.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 19:32:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24036-PA 218 GG24036-PA 1..218 1..216 898 82.1 Plus
Dere\GG24035-PA 312 GG24035-PA 223..308 127..210 231 47.7 Plus
Dere\GG24035-PA 312 GG24035-PA 1..80 1..84 172 44 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 19:32:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13272-PA 225 GH13272-PA 1..225 1..214 555 51.6 Plus
Dgri\GH13640-PA 316 GH13640-PA 191..316 97..215 258 41.7 Plus
Dgri\GH13271-PA 183 GH13271-PA 58..181 97..212 256 41.1 Plus
Dgri\GH13641-PA 94 GH13641-PA 1..84 1..83 193 46.4 Plus
Dgri\GH13640-PA 316 GH13640-PA 1..85 1..83 173 43.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:56:00
Subject Length Description Subject Range Query Range Score Percent Strand
aust-PB 216 CG17009-PB 1..216 1..216 1086 100 Plus
aust-PA 216 CG17009-PA 1..216 1..216 1086 100 Plus
borr-PA 315 CG4454-PA 175..311 88..210 236 41.4 Plus
borr-PB 319 CG4454-PB 179..315 88..210 236 41.4 Plus
borr-PA 315 CG4454-PA 1..99 1..98 178 41 Plus
borr-PB 319 CG4454-PB 1..99 1..98 178 41 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 19:32:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11912-PA 221 GI11912-PA 1..221 1..214 573 52.7 Plus
Dmoj\GI11901-PA 324 GI11901-PA 201..320 98..210 272 45.8 Plus
Dmoj\GI11901-PA 324 GI11901-PA 1..85 1..83 174 40 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 19:32:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21274-PA 226 GL21274-PA 1..226 1..214 599 56.4 Plus
Dper\GL10058-PA 226 GL10058-PA 1..226 1..214 583 55.9 Plus
Dper\GL19675-PA 226 GL19675-PA 1..226 1..214 581 55.5 Plus
Dper\GL14140-PA 124 GL14140-PA 1..124 1..121 321 52.8 Plus
Dper\GL25535-PA 318 GL25535-PA 180..316 86..212 255 40 Plus
Dper\GL25535-PA 318 GL25535-PA 1..80 1..84 165 45.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 19:32:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28788-PA 202 GA28788-PA 1..202 1..214 556 54.3 Plus
Dpse\GA28267-PA 182 GA28267-PA 1..182 1..214 280 36.4 Plus
Dpse\GA18196-PA 318 GA18196-PA 180..316 86..212 259 41.4 Plus
Dpse\GA18196-PA 318 GA18196-PA 1..80 1..84 168 45.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 19:32:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12528-PA 217 GM12528-PA 1..217 1..216 1069 94.5 Plus
Dsec\GM12517-PA 314 GM12517-PA 225..310 127..210 231 47.7 Plus
Dsec\GM12517-PA 314 GM12517-PA 1..80 1..84 175 45.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 19:32:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22363-PA 216 GD22363-PA 1..216 1..216 1073 94.9 Plus
Dsim\GD22362-PA 315 GD22362-PA 226..311 127..210 230 47.7 Plus
Dsim\GD22362-PA 315 GD22362-PA 1..80 1..84 175 45.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 19:32:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14024-PA 220 GJ14024-PA 1..220 1..214 590 56.8 Plus
Dvir\GJ14013-PA 325 GJ14013-PA 202..323 98..212 272 44.3 Plus
Dvir\GJ14013-PA 325 GJ14013-PA 1..85 1..83 188 44.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 19:32:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15062-PA 331 GK15062-PA 242..329 127..212 248 51.1 Plus
Dwil\GK15971-PA 257 GK15971-PA 132..255 91..212 219 40.9 Plus
Dwil\GK15063-PA 144 GK15063-PA 56..138 123..205 186 43.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 19:32:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10588-PA 218 GE10588-PA 1..218 1..216 961 85.8 Plus
Dyak\GE10577-PA 313 GE10577-PA 224..309 127..210 230 47.7 Plus
Dyak\GE10577-PA 313 GE10577-PA 1..80 1..84 175 45.2 Plus