Clone IP08110 Report

Search the DGRC for IP08110

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:81
Well:10
Vector:pOT2
Associated Gene/TranscriptCG15343-RA
Protein status:IP08110.pep: gold
Preliminary Size:642
Sequenced Size:969

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15343 2005-01-01 Successful iPCR screen
CG15343 2008-04-29 Release 5.5 accounting
CG15343 2008-08-15 Release 5.9 accounting
CG15343 2008-12-18 5.12 accounting

Clone Sequence Records

IP08110.complete Sequence

969 bp (969 high quality bases) assembled on 2006-01-20

GenBank Submission: BT024359

> IP08110.complete
CGCCGCGTCGAGGGTGCTGCGATTGAAAGGATTTGCCACGTGCTGGACCC
ACCTGGAAGAGCCGCTGGAAGGCGTAGTAGCCGCAAGACAACGCCACGAA
TATCCAAAAGACCCCGTTGATCAGGACCCACCAATATGACCTCCTCTTTG
GCCAAAATCGAGGACTTTCCCTCCGATCCCGTTGAATTTTTTAAGGAGAT
CCTTCAGGAAGCTGCCAAGGGACATCCCGATGGATTCATACAGGAAATGA
ACCTGGCCACCGTGGACGAGGAATTCGGTGTGCTCAACCGCACTGTTCTG
TACCGCGGACTCACCCAGGATAACTGTGTGTTCTACATCACCCATCGGTA
CGTTCGCAACTTCAAGAACCTTCAGGCCAATCCCAAGGCCTGCATCACCT
TCTATATGCCAGATGTTAAGGATAAGGCCGGAAATCAGAATGCCTGGCAG
GTGAGATTGATTGGAGCCACCGCCGTGGAACTTGACCAAAGCGAAATGGA
TGCTTTGTGGGCGAAGGAGAATTTGGCTGCCCAAATCAGGGGTCACATCT
GTCCCTGTGGAGAACCGATTAACTACGATGATCTCAAGGCAAAGCACGAT
CAGTTCCTTCTGGATCACAGAGGAAAATCCATCGAGAGACCAGCAAGCTA
TACCGCTTGGAAATTCCAACCGCAGCGTTGGGACTTCCTGAAGGTGGGTC
TCGACCAAATCGCAGACCGGGTGCAGTACCGCCTTCAGAAGGATGGGAAA
TGGAAATCCATGCACGTGTCCACCTAATTGTGGTATACCCCCAGTAAAGC
CATTATCTTGATTTTGGACGATTTCATTTTATTCAACAATATCTTTCTAC
AAACAGCTAAACGTACAGACTAACAACTAAATTTGCTTCCTTTTCGACAT
GTTTAACATACAATTACAACATAGTTAATAAATATTACACAAAACAGCAA
AAAAAAAAAAAAAAAAAAA

IP08110.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:21:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG15343.a 948 CG15343.a 1..948 1..948 4740 100 Plus
CG1632.a 4027 CG1632.a 3874..4027 956..803 770 100 Minus
CG1632.b 4103 CG1632.b 3950..4103 956..803 770 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:39:22
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 8164500..8165027 650..123 2550 98.9 Minus
chrX 22417052 chrX 8164135..8164432 948..651 1430 98.7 Minus
chrX 22417052 chrX 8165489..8165613 125..1 625 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:54:48 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:39:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8272693..8273220 650..123 2640 100 Minus
X 23542271 X 8272316..8272621 956..651 1530 100 Minus
X 23542271 X 8273682..8273806 125..1 625 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:13:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 8280791..8281318 650..123 2640 100 Minus
X 23527363 X 8280414..8280719 956..651 1530 100 Minus
X 23527363 X 8281780..8281904 125..1 625 100 Minus
Blast to na_te.dros performed on 2019-03-16 19:39:21 has no hits.

IP08110.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:40:22 Download gff for IP08110.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 8164135..8164432 651..948 98 <- Minus
chrX 8164500..8165025 125..650 98 <- Minus
chrX 8165490..8165613 1..124 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:35:20 Download gff for IP08110.complete
Subject Subject Range Query Range Percent Splice Strand
CG15343-RA 1..642 136..777 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:37:42 Download gff for IP08110.complete
Subject Subject Range Query Range Percent Splice Strand
CG15343-RA 1..642 136..777 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:44:26 Download gff for IP08110.complete
Subject Subject Range Query Range Percent Splice Strand
CG15343-RA 1..642 136..777 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:12:40 Download gff for IP08110.complete
Subject Subject Range Query Range Percent Splice Strand
CG15343-RA 1..642 136..777 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:37:56 Download gff for IP08110.complete
Subject Subject Range Query Range Percent Splice Strand
CG15343-RA 1..642 136..777 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:09:30 Download gff for IP08110.complete
Subject Subject Range Query Range Percent Splice Strand
CG15343-RA 1..642 136..777 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:37:42 Download gff for IP08110.complete
Subject Subject Range Query Range Percent Splice Strand
CG15343-RA 1..948 1..948 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:26 Download gff for IP08110.complete
Subject Subject Range Query Range Percent Splice Strand
CG15343-RA 1..948 1..948 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:12:40 Download gff for IP08110.complete
Subject Subject Range Query Range Percent Splice Strand
CG15343-RA 1..642 136..777 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:37:56 Download gff for IP08110.complete
Subject Subject Range Query Range Percent Splice Strand
CG15343-RA 1..948 1..948 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:40:22 Download gff for IP08110.complete
Subject Subject Range Query Range Percent Splice Strand
X 8272324..8272621 651..948 100 <- Minus
X 8272693..8273218 125..650 100 <- Minus
X 8273683..8273806 1..124 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:40:22 Download gff for IP08110.complete
Subject Subject Range Query Range Percent Splice Strand
X 8272324..8272621 651..948 100 <- Minus
X 8272693..8273218 125..650 100 <- Minus
X 8273683..8273806 1..124 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:40:22 Download gff for IP08110.complete
Subject Subject Range Query Range Percent Splice Strand
X 8272324..8272621 651..948 100 <- Minus
X 8272693..8273218 125..650 100 <- Minus
X 8273683..8273806 1..124 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:26 Download gff for IP08110.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8166357..8166654 651..948 100 <- Minus
arm_X 8166726..8167251 125..650 100 <- Minus
arm_X 8167716..8167839 1..124 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:00:49 Download gff for IP08110.complete
Subject Subject Range Query Range Percent Splice Strand
X 8280422..8280719 651..948 100 <- Minus
X 8280791..8281316 125..650 100 <- Minus
X 8281781..8281904 1..124 100   Minus

IP08110.pep Sequence

Translation from 135 to 776

> IP08110.pep
MTSSLAKIEDFPSDPVEFFKEILQEAAKGHPDGFIQEMNLATVDEEFGVL
NRTVLYRGLTQDNCVFYITHRYVRNFKNLQANPKACITFYMPDVKDKAGN
QNAWQVRLIGATAVELDQSEMDALWAKENLAAQIRGHICPCGEPINYDDL
KAKHDQFLLDHRGKSIERPASYTAWKFQPQRWDFLKVGLDQIADRVQYRL
QKDGKWKSMHVST*

IP08110.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 13:21:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22444-PA 216 GF22444-PA 1..216 1..213 848 73.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 13:21:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17971-PA 93 GG17971-PA 1..93 121..213 490 95.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 13:21:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12411-PA 215 GH12411-PA 4..215 3..213 662 58.6 Plus
Dgri\GH11282-PA 215 GH11282-PA 4..215 3..213 585 53 Plus
Dgri\GH23180-PA 215 GH23180-PA 4..215 3..213 582 53 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:49:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG15343-PA 213 CG15343-PA 1..213 1..213 1144 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 13:21:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15866-PA 217 GI15866-PA 4..217 3..213 646 54.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 13:21:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19907-PA 153 GL19907-PA 20..153 83..213 518 73.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 13:21:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13658-PA 218 GA13658-PA 4..218 2..213 817 71.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 13:21:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21452-PA 213 GM21452-PA 1..213 1..213 1120 96.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 13:21:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16121-PA 273 GD16121-PA 105..273 45..213 882 94.7 Plus
Dsim\GD16121-PA 273 GD16121-PA 1..105 1..105 539 93.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 13:21:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19024-PA 217 GJ19024-PA 4..217 3..213 704 59.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 13:21:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16313-PA 214 GK16313-PA 1..214 1..213 699 60.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 13:21:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17463-PA 213 GE17463-PA 1..213 1..213 1107 95.3 Plus

IP08110.hyp Sequence

Translation from 135 to 776

> IP08110.hyp
MTSSLAKIEDFPSDPVEFFKEILQEAAKGHPDGFIQEMNLATVDEEFGVL
NRTVLYRGLTQDNCVFYITHRYVRNFKNLQANPKACITFYMPDVKDKAGN
QNAWQVRLIGATAVELDQSEMDALWAKENLAAQIRGHICPCGEPINYDDL
KAKHDQFLLDHRGKSIERPASYTAWKFQPQRWDFLKVGLDQIADRVQYRL
QKDGKWKSMHVST*

IP08110.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:49:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG15343-PA 213 CG15343-PA 1..213 1..213 1144 100 Plus