Clone IP08228 Report

Search the DGRC for IP08228

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:82
Well:28
Vector:pOT2
Associated Gene/TranscriptCG15912-RA
Protein status:IP08228.pep: gold
Preliminary Size:741
Sequenced Size:906

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15912 2005-01-01 Successful iPCR screen
CG15912 2008-04-29 Release 5.5 accounting
CG15912 2008-08-15 Release 5.9 accounting
CG15912 2008-12-18 5.12 accounting

Clone Sequence Records

IP08228.complete Sequence

906 bp (906 high quality bases) assembled on 2005-01-13

GenBank Submission: BT022307

> IP08228.complete
CAAAATGTCGTTGACTTCGCAATTTGTTGCGAATTTGAAACGCTTTCGCC
TGGTGACCTTCGATGTAACGGACACGCTGCTTCGCCTGGAGGATCCCCTT
CGCCAGTACCATCAGACGGCAGAGGAGTTCGGGGTCACCGGAGTGGATCG
CCGCCGATTGGAACAATGCTTTCGCCAGCAATTCAAGGCGATGAGCAGCG
AACATCCAAACTTTGGCCGTTACTCGCCGGGATTGGATTGGCAGCGTTGG
TGGCTTCAGCTGGTGGCTCGAACCTTTAGCTGCGTGGACCACGGTCTGGC
GCCCGAGAAGCTGGAGAAGATCGGCCAGCGGCTAATTTCCGTTTTTCGGA
CCAGCGCCTGTTGGAGTCACGTGAATGGTGCCCAGGAGTTGGTGCAGAAC
GTCCGAAATGCCGGCAAATGTGTGGGCATCATCTCCAATTTCGATTCGTC
ACTGCCACAAGTCCTGGACGCCATGGGCTTTGCCGGCAAATTCGATTTCA
TTCTGACTTCCTACGAAGCCGGTGTTATGAAGCCCGAACGCGGTATCTTC
GAAATTCCGCTGCAGAGATTGCAAATTCCAGCGGAGCAGGCCCTTCACAT
TGGCAACAAGTTGGATATGGACTATGAAGGTGCCCGGAATTGCGGCTGGA
GCGGTTTGCTTGTGAGCAACGCTGACAATCCCCATTCTTTTGCCAGTCTT
TCCAGTCTGTTGGAGGCCTTAAAAACCCAACCAATCCGATGGTAATCCAC
CAAAGAAACTCCTCTCGGGAACCTGCAGTTCTTCGATTGGATAATGGCTG
TTGTTATTTTTGTAGATTTCCTTTTTTTTTTTGCATTAAGATAACATAAC
TGAATGTAAAACTAGTGGTAAATATAAATACGCGATCTTAAAAAAAAAAA
AAAAAA

IP08228.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:44:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG15912-RA 888 CG15912-RA 1..888 1..889 4405 99.8 Plus
CG11436-RA 1998 CG11436-RA 1922..1998 891..814 350 98.7 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:10:39
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 4441966..4442853 1..889 4290 99.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:55:17 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:10:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4549070..4549959 1..891 4405 99.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:34:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 4557168..4558057 1..891 4415 99.8 Plus
Blast to na_te.dros performed on 2019-03-15 12:10:37 has no hits.

IP08228.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:11:34 Download gff for IP08228.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 4441966..4442853 1..889 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:36:05 Download gff for IP08228.complete
Subject Subject Range Query Range Percent Splice Strand
CG15912-RA 1..741 5..745 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:13:48 Download gff for IP08228.complete
Subject Subject Range Query Range Percent Splice Strand
CG15912-RA 1..741 5..745 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:38:30 Download gff for IP08228.complete
Subject Subject Range Query Range Percent Splice Strand
CG15912-RA 1..741 5..745 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:58:18 Download gff for IP08228.complete
Subject Subject Range Query Range Percent Splice Strand
CG15912-RA 1..741 5..745 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:53:19 Download gff for IP08228.complete
Subject Subject Range Query Range Percent Splice Strand
CG15912-RA 1..741 5..745 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:10:23 Download gff for IP08228.complete
Subject Subject Range Query Range Percent Splice Strand
CG15912-RA 1..741 5..745 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:13:48 Download gff for IP08228.complete
Subject Subject Range Query Range Percent Splice Strand
CG15912-RA 1..888 1..889 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:38:30 Download gff for IP08228.complete
Subject Subject Range Query Range Percent Splice Strand
CG15912-RA 1..888 1..889 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:58:18 Download gff for IP08228.complete
Subject Subject Range Query Range Percent Splice Strand
CG15912-RA 1..741 5..745 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:53:19 Download gff for IP08228.complete
Subject Subject Range Query Range Percent Splice Strand
CG15912-RA 1..888 1..889 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:11:34 Download gff for IP08228.complete
Subject Subject Range Query Range Percent Splice Strand
X 4549070..4549957 1..889 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:11:34 Download gff for IP08228.complete
Subject Subject Range Query Range Percent Splice Strand
X 4549070..4549957 1..889 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:11:34 Download gff for IP08228.complete
Subject Subject Range Query Range Percent Splice Strand
X 4549070..4549957 1..889 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:38:30 Download gff for IP08228.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 4443103..4443990 1..889 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:33:46 Download gff for IP08228.complete
Subject Subject Range Query Range Percent Splice Strand
X 4557168..4558055 1..889 99   Plus

IP08228.hyp Sequence

Translation from 0 to 744

> IP08228.hyp
KMSLTSQFVANLKRFRLVTFDVTDTLLRLEDPLRQYHQTAEEFGVTGVDR
RRLEQCFRQQFKAMSSEHPNFGRYSPGLDWQRWWLQLVARTFSCVDHGLA
PEKLEKIGQRLISVFRTSACWSHVNGAQELVQNVRNAGKCVGIISNFDSS
LPQVLDAMGFAGKFDFILTSYEAGVMKPERGIFEIPLQRLQIPAEQALHI
GNKLDMDYEGARNCGWSGLLVSNADNPHSFASLSSLLEALKTQPIRW*

IP08228.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:50:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG15912-PA 246 CG15912-PA 1..246 2..247 1297 100 Plus
Reg-2-PA 260 CG3200-PA 3..260 11..247 366 34 Plus

IP08228.pep Sequence

Translation from 1 to 744

> IP08228.pep
KMSLTSQFVANLKRFRLVTFDVTDTLLRLEDPLRQYHQTAEEFGVTGVDR
RRLEQCFRQQFKAMSSEHPNFGRYSPGLDWQRWWLQLVARTFSCVDHGLA
PEKLEKIGQRLISVFRTSACWSHVNGAQELVQNVRNAGKCVGIISNFDSS
LPQVLDAMGFAGKFDFILTSYEAGVMKPERGIFEIPLQRLQIPAEQALHI
GNKLDMDYEGARNCGWSGLLVSNADNPHSFASLSSLLEALKTQPIRW*

IP08228.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:00:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19357-PA 249 GF19357-PA 1..249 2..247 971 71.9 Plus
Dana\GF10059-PA 260 GF10059-PA 3..260 11..247 372 33.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:00:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18712-PA 246 GG18712-PA 1..246 2..247 1249 93.9 Plus
Dere\GG14654-PA 260 GG14654-PA 3..260 11..247 367 33.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:00:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17703-PA 252 GH17703-PA 1..252 2..247 812 60.9 Plus
Dgri\GH16592-PA 262 GH16592-PA 3..262 11..247 368 33.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:10:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG15912-PA 246 CG15912-PA 1..246 2..247 1297 100 Plus
Reg-2-PA 260 CG3200-PA 3..260 11..247 366 34 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:00:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16110-PA 262 GI16110-PA 1..262 2..247 796 58.2 Plus
Dmoj\GI12439-PA 261 GI12439-PA 3..261 11..247 361 33.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:00:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20262-PA 251 GL20262-PA 1..251 2..247 892 69.7 Plus
Dper\GL20848-PA 260 GL20848-PA 3..260 11..247 393 35.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:00:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14022-PA 251 GA14022-PA 1..251 2..247 899 70.1 Plus
Dpse\GA16604-PA 260 GA16604-PA 3..260 11..247 394 35.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:00:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12350-PA 246 GM12350-PA 1..246 2..247 1260 95.5 Plus
Dsec\GM14270-PA 260 GM14270-PA 3..260 11..247 374 34 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:00:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16695-PA 246 GD16695-PA 1..246 2..247 1271 96.3 Plus
Dsim\GD13525-PA 205 GD13525-PA 1..205 64..247 292 32.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:00:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15763-PA 251 GJ15763-PA 1..251 2..247 814 59.4 Plus
Dvir\GJ12337-PA 261 GJ12337-PA 3..261 11..247 356 33.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:00:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25149-PA 255 GK25149-PA 1..255 2..247 810 60 Plus
Dwil\GK16609-PA 267 GK16609-PA 4..235 12..228 371 34.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:00:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16351-PA 246 GE16351-PA 1..246 2..247 1240 92.7 Plus
Dyak\GE21014-PA 297 GE21014-PA 40..297 11..247 371 34 Plus