Clone IP08278 Report

Search the DGRC for IP08278

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:82
Well:78
Vector:pOT2
Associated Gene/TranscriptCG31141-RA
Protein status:IP08278.pep: gold
Preliminary Size:636
Sequenced Size:979

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31141 2005-01-01 Successful iPCR screen
CG31141 2008-04-29 Stopped prior to 5.5

Clone Sequence Records

IP08278.complete Sequence

979 bp assembled on 2011-09-15

GenBank Submission: BT128895.1

> IP08278.complete
AAAACACGTGACAGCAAGGCGGTTCATCAGTTGTTTTATTTGTCAAATTG
AAAAGTACACAATAATTAGGTAACAGAAATGTTGGAAATATTTAGGACGC
CCTATGCGGACTCCAAACAGCTGCCGTTGGCAACTGGACCCGGTCCCATC
ATAATTATCCTCATTGGATACCTTCTGGTAGTTTTTAAGGCCGGCAGGAA
GTTCATGGAGCATCGAGAACCTTATAATCTGCGAAAAGTGCTTAAGTACT
ATAACATGTTCCAGATATTCTACAATATAATGATGCTCCTGCCCGGATAC
TACTTCATGTTGGTATTCCAACCGTACAACTTTCGCTGCATGACTGTCCT
GCAGCAGGATCATCCGCTGAAGAACTGGGAGCGCTGCATCAGCTATGCTT
ACTACATAAACAAGATCGTTGACCTGCTTGACACCGTGTTCTGCGTGCTG
CGCAAGAAGTACTCGCAAATAACGTTTTTGCACGTTTTCCACCACGTCCT
GATGCCATCCGCCGGATACTTGATAATACGATTCTATGGCTACGGAGGTC
AACTCTTCTTCCTGTGCTCCTTCAATGTATTCGTTCATATCTTCATGTAT
GCCTATTACTATTCGGCCATCAAGGGCAATACGGTGCGTTGGAAGCGGTA
CTTGACCCTCATGCAAATGCTGCAGTTCCTCCTCATGTTTGGCCATTGCG
CCTTAACCGCCATGCAGCGGCAGTGCACTGCATCGCAGGGAACCCTCTTT
CTGGTCAGCTGCTCCGCGACCATCATGTTTATCATGTTCGCCAACTTTTA
TTTCCAGTGCTACCTGAGACCGAAGCATAAGGAGAACTAAAACTTAAATT
AGGTCGAAAATTGAAGATATACTAATTTAGTCATACGTTTTTATGAGCCA
TTTTAATGGTGAACTTTCTAGATTTACAAAATTGTGCTTTGTAATTAAAA
AGATAAATTTCAAAAAAAAAAAAAAAAAA

IP08278.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 11:01:47
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 19747099..19747765 295..961 3335 100 Plus
chr3R 27901430 chr3R 19746746..19747040 1..295 1415 98.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 11:01:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23923653..23924325 295..967 3365 100 Plus
3R 32079331 3R 23923300..23923594 1..295 1475 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:01:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 23664484..23665156 295..967 3365 100 Plus
3R 31820162 3R 23664131..23664425 1..295 1475 100 Plus
Blast to na_te.dros performed on 2019-03-15 11:01:45 has no hits.

IP08278.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 11:02:38 Download gff for IP08278.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 19746746..19747039 1..294 98 -> Plus
chr3R 19747099..19747765 295..961 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-09-15 15:43:23 Download gff for IP08278.complete
Subject Subject Range Query Range Percent Splice Strand
CG31141-RA 1..762 79..840 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:33:58 Download gff for IP08278.complete
Subject Subject Range Query Range Percent Splice Strand
CG31141-RA 1..762 79..840 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:20:06 Download gff for IP08278.complete
Subject Subject Range Query Range Percent Splice Strand
CG31141-RA 1..762 79..840 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-15 15:43:22 Download gff for IP08278.complete
Subject Subject Range Query Range Percent Splice Strand
CG31141-RA 1..961 1..961 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:33:58 Download gff for IP08278.complete
Subject Subject Range Query Range Percent Splice Strand
CG31141-RA 1..961 1..961 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:20:06 Download gff for IP08278.complete
Subject Subject Range Query Range Percent Splice Strand
CG31141-RA 1..961 1..961 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:02:38 Download gff for IP08278.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23923300..23923593 1..294 100 -> Plus
3R 23923653..23924319 295..961 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:02:38 Download gff for IP08278.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23923300..23923593 1..294 100 -> Plus
3R 23923653..23924319 295..961 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:02:38 Download gff for IP08278.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23923300..23923593 1..294 100 -> Plus
3R 23923653..23924319 295..961 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:33:58 Download gff for IP08278.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19749022..19749315 1..294 100 -> Plus
arm_3R 19749375..19750041 295..961 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:48:39 Download gff for IP08278.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23664131..23664424 1..294 100 -> Plus
3R 23664484..23665150 295..961 100   Plus

IP08278.hyp Sequence

Translation from 78 to 839

> IP08278.hyp
MLEIFRTPYADSKQLPLATGPGPIIIILIGYLLVVFKAGRKFMEHREPYN
LRKVLKYYNMFQIFYNIMMLLPGYYFMLVFQPYNFRCMTVLQQDHPLKNW
ERCISYAYYINKIVDLLDTVFCVLRKKYSQITFLHVFHHVLMPSAGYLII
RFYGYGGQLFFLCSFNVFVHIFMYAYYYSAIKGNTVRWKRYLTLMQMLQF
LLMFGHCALTAMQRQCTASQGTLFLVSCSATIMFIMFANFYFQCYLRPKH
KEN*

IP08278.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:33:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG31141-PA 253 CG31141-PA 1..253 1..253 1366 100 Plus
CG16904-PA 262 CG16904-PA 1..253 1..249 701 50.6 Plus
CG8534-PA 265 CG8534-PA 14..252 11..246 613 49.4 Plus
CG9459-PA 265 CG9459-PA 5..257 1..249 581 43.1 Plus
CG9458-PA 264 CG9458-PA 15..260 11..252 578 43.3 Plus

IP08278.pep Sequence

Translation from 78 to 839

> IP08278.pep
MLEIFRTPYADSKQLPLATGPGPIIIILIGYLLVVFKAGRKFMEHREPYN
LRKVLKYYNMFQIFYNIMMLLPGYYFMLVFQPYNFRCMTVLQQDHPLKNW
ERCISYAYYINKIVDLLDTVFCVLRKKYSQITFLHVFHHVLMPSAGYLII
RFYGYGGQLFFLCSFNVFVHIFMYAYYYSAIKGNTVRWKRYLTLMQMLQF
LLMFGHCALTAMQRQCTASQGTLFLVSCSATIMFIMFANFYFQCYLRPKH
KEN*

IP08278.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 19:35:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13758-PA 261 GF13758-PA 1..258 1..253 513 40.9 Plus
Dana\GF15498-PA 253 GF15498-PA 5..251 10..252 491 40.1 Plus
Dana\GF17148-PA 263 GF17148-PA 11..259 6..253 490 46 Plus
Dana\GF15497-PA 253 GF15497-PA 5..253 10..252 479 42.6 Plus
Dana\GF15499-PA 244 GF15499-PA 6..240 22..253 474 41.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 19:35:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11234-PA 253 GG11234-PA 1..253 1..253 1268 94.1 Plus
Dere\GG17320-PA 260 GG17320-PA 1..254 1..250 688 49.6 Plus
Dere\GG17214-PA 265 GG17214-PA 14..258 11..252 600 46.9 Plus
Dere\GG17319-PA 264 GG17319-PA 11..261 6..253 508 44.8 Plus
Dere\GG17318-PA 264 GG17318-PA 5..256 1..248 494 43.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 19:35:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22831-PA 416 GH22831-PA 186..412 31..253 576 47.6 Plus
Dgri\GH19804-PA 261 GH19804-PA 1..251 1..246 496 41.4 Plus
Dgri\GH22831-PA 416 GH22831-PA 1..178 2..178 444 51.1 Plus
Dgri\GH19803-PA 217 GH19803-PA 1..213 43..250 421 42.1 Plus
Dgri\GH17398-PA 285 GH17398-PA 27..264 12..247 373 35.8 Plus
Dgri\GH19244-PA 298 GH19244-PA 29..256 17..245 344 35.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:40:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG31141-PA 253 CG31141-PA 1..253 1..253 1366 100 Plus
CG16904-PA 262 CG16904-PA 1..253 1..249 701 50.6 Plus
CG8534-PA 265 CG8534-PA 14..252 11..246 613 49.4 Plus
CG9459-PA 265 CG9459-PA 5..257 1..249 581 43.1 Plus
CG9458-PA 264 CG9458-PA 15..260 11..252 578 43.3 Plus
CG17821-PA 262 CG17821-PA 5..261 1..252 555 42.4 Plus
eloF-PA 257 CG16905-PA 6..250 11..251 533 42 Plus
CG18609-PA 263 CG18609-PA 1..253 1..248 518 40.2 Plus
CG5326-PA 277 CG5326-PA 27..262 12..245 402 36.6 Plus
CG2781-PA 329 CG2781-PA 23..265 12..252 387 35.2 Plus
sit-PA 295 CG5278-PA 29..256 17..245 372 35.6 Plus
CG33110-PA 337 CG33110-PA 46..296 3..249 365 34.9 Plus
CG31522-PH 364 CG31522-PH 23..265 12..253 348 32.9 Plus
CG31522-PG 364 CG31522-PG 23..265 12..253 348 32.9 Plus
CG31522-PA 364 CG31522-PA 23..265 12..253 348 32.9 Plus
CG6660-PA 272 CG6660-PA 24..263 15..251 345 34.9 Plus
CG31522-PF 365 CG31522-PF 23..266 12..253 341 32.7 Plus
CG31522-PB 365 CG31522-PB 23..266 12..253 341 32.7 Plus
CG31522-PD 365 CG31522-PD 23..266 12..253 341 32.7 Plus
bond-PC 322 CG6921-PC 28..261 17..249 337 33.3 Plus
bond-PA 322 CG6921-PA 28..261 17..249 337 33.3 Plus
bond-PB 322 CG6921-PB 28..261 17..249 337 33.3 Plus
CG31522-PI 392 CG31522-PI 23..293 12..253 328 31.3 Plus
CG31523-PF 354 CG31523-PF 29..259 17..246 293 31.6 Plus
CG31523-PE 354 CG31523-PE 29..259 17..246 293 31.6 Plus
CG31523-PG 354 CG31523-PG 29..259 17..246 293 31.6 Plus
CG31523-PD 354 CG31523-PD 29..259 17..246 293 31.6 Plus
CG31523-PA 354 CG31523-PA 29..259 17..246 293 31.6 Plus
CG31523-PB 354 CG31523-PB 29..259 17..246 293 31.6 Plus
CG31523-PC 354 CG31523-PC 29..259 17..246 293 31.6 Plus
Elo68beta-PB 269 CG11801-PB 12..259 3..245 271 31 Plus
Elo68alpha-PA 262 CG32072-PA 15..252 8..245 256 30.6 Plus
CG30008-PA 266 CG30008-PA 22..257 21..253 251 28 Plus
Baldspot-PB 316 CG3971-PB 45..266 31..248 178 26.6 Plus
Baldspot-PA 316 CG3971-PA 45..266 31..248 178 26.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 19:35:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10225-PA 258 GI10225-PA 1..257 1..253 635 48.6 Plus
Dmoj\GI10223-PA 260 GI10223-PA 1..255 1..252 627 46.9 Plus
Dmoj\GI20345-PA 249 GI20345-PA 2..248 12..253 517 40.9 Plus
Dmoj\GI20347-PA 245 GI20347-PA 1..243 16..253 497 41.8 Plus
Dmoj\GI20344-PA 262 GI20344-PA 10..257 7..249 484 40.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 19:35:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23223-PA 262 GL23223-PA 1..253 1..249 718 53 Plus
Dper\GL23222-PA 264 GL23222-PA 1..259 1..253 523 45.2 Plus
Dper\GL11310-PA 263 GL11310-PA 6..263 1..253 522 44.4 Plus
Dper\GL11311-PA 284 GL11311-PA 3..254 2..248 483 40.7 Plus
Dper\GL13683-PA 277 GL13683-PA 27..264 12..247 368 35 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 19:35:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14209-PA 262 GA14209-PA 1..253 1..249 704 51.8 Plus
Dpse\GA21802-PA 264 GA21802-PA 1..259 1..253 527 45.2 Plus
Dpse\GA14683-PA 263 GA14683-PA 6..263 1..253 524 44.4 Plus
Dpse\GA15013-PA 286 GA15013-PA 3..254 2..248 483 40.7 Plus
Dpse\GA18806-PA 277 GA18806-PA 27..264 12..247 368 35 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 19:35:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26535-PA 253 GM26535-PA 1..253 1..253 1305 96.8 Plus
Dsec\GM26206-PA 262 GM26206-PA 1..257 1..253 690 49.4 Plus
Dsec\GM23845-PA 265 GM23845-PA 13..258 10..252 603 48.8 Plus
Dsec\GM19879-PA 262 GM19879-PA 5..262 1..253 531 42.6 Plus
Dsec\GM26205-PA 270 GM26205-PA 5..261 1..253 503 42.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 19:35:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21043-PA 253 GD21043-PA 1..253 1..253 1309 96.8 Plus
Dsim\GD20753-PA 262 GD20753-PA 1..257 1..253 679 49.4 Plus
Dsim\GD18652-PA 265 GD18652-PA 13..258 10..252 600 48.4 Plus
Dsim\GD20751-PA 264 GD20751-PA 11..261 6..253 532 42.3 Plus
Dsim\GD25362-PA 262 GD25362-PA 5..262 1..253 518 41.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 19:35:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11026-PA 263 GJ11026-PA 1..256 1..252 699 50.8 Plus
Dvir\GJ11028-PA 261 GJ11028-PA 1..257 1..253 652 50.6 Plus
Dvir\GJ11027-PA 244 GJ11027-PA 1..231 1..248 542 45.2 Plus
Dvir\GJ22069-PA 248 GJ22069-PA 1..237 15..246 491 43.5 Plus
Dvir\GJ22070-PA 218 GJ22070-PA 1..216 43..253 466 43.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 19:35:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20708-PA 255 GK20708-PA 1..255 1..251 589 44.7 Plus
Dwil\GK20709-PA 266 GK20709-PA 3..240 20..253 536 45 Plus
Dwil\GK14510-PA 217 GK14510-PA 1..160 1..160 474 56.9 Plus
Dwil\GK20710-PA 205 GK20710-PA 1..205 1..201 456 43.4 Plus
Dwil\GK20706-PA 215 GK20706-PA 1..215 43..253 437 42.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 19:35:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10400-PA 253 GE10400-PA 1..253 1..253 1262 93.3 Plus
Dyak\GE24724-PA 262 GE24724-PA 1..257 1..253 687 48.6 Plus
Dyak\GE25994-PA 264 GE25994-PA 14..258 11..252 537 46.5 Plus
Dyak\GE24722-PA 264 GE24722-PA 11..261 6..253 508 42.7 Plus
Dyak\GE24723-PA 264 GE24723-PA 11..260 6..252 502 44.6 Plus