Clone IP08458 Report

Search the DGRC for IP08458

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:84
Well:58
Vector:pOT2
Associated Gene/TranscriptAtx-1-RB
Protein status:IP08458.pep: gold
Preliminary Size:693
Sequenced Size:2910

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4547 2005-01-01 Successful iPCR screen
CG4542 2008-04-29 Release 5.5 accounting
Atx-1 2008-08-15 Release 5.9 accounting
CG4542 2008-08-15 Release 5.9 accounting
CG4542 2008-12-18 5.12 accounting
Atx-1 2008-12-18 5.12 accounting

Clone Sequence Records

IP08458.complete Sequence

2910 bp (2910 high quality bases) assembled on 2006-09-20

GenBank Submission: BT029072.1

> IP08458.complete
ATCGGACAGCACTTACCGCTGATAAGGAATGCATCGAATCTAAACTACAA
TCCCAATCCCTGAGAGAAACGAAGATGAAGGACCTCTTCTGGCACCTGGT
GGGCATAGCCACCGGCCTAAAGATCCTGCTGATTCCAGCCTACCATTCCA
CGGATTTCGAAGTCCATCGCAACTGGCTGGCCATCACCCACAGTTTGCCG
CTGAATCAGTGGTATGTGGACGCCACCAGCGAGTGGACACTGGACTATCC
GCCGTTCTTCGCCTACTTCGAGTGGCTGCTCTCGCAGGTGGCCAAGTACG
TGGATCCACGAATGCTGGTGGTGGATAACCTGAATTACGAGTCCAAGGCC
ACCGTTTACTTTCAGCGGCTCTCGGTGATTGTTACGGATCTAGTGTATGT
GCTCGGCGTGCGCAGCTGCCTGGGCTCACTGGGATTGGGCAGGGATACGC
AGCAGTTCTTTGCCGCCTCCATGTTGCTGCTCCTCAACGTGGGATTGATC
TTCGTGGACCACATTCACTTTCAGTACAATGGCTTGCTGTTCGGCATACT
GCTCCTGAGCATCGGTTCCCTCATCCGGCAGCGGTTCCTCTGGAGCGCCT
TTGCCTTCGCCGTGCTGCTCAACTTTAAGCACATCTTTCTGTACATGGCG
CCCGCTTTTGGGGTCTACCTGCTGCGTTTCTATTGCCTGGAGCAAGCGAG
TGTGGTGTCTGCGGTGGGTGCCGTTGTCAAGCTGCTGGTCGTTGGACTTA
CTCCGTTCGCCGTGTCTTTCGGACCCTTCTGGCAGCAATTGCCGCAAGTC
CTCTCCCGTCTGTTTCCTTTCAAGCGTGGCCTAACGCACGCCTACTGGGC
ACCCAACTTCTGGGCGCTGTACAATGCCGCCGACAAGTTGGCCGCCGGAG
TTTTGAAGGTACAGGATGGCGGTGCCTCGACGACGTCAGGATTGGTCCAG
GAGGTCAGGCACTCGGTGCTGCCAGCCATCACACCGCCTGTGACTTTTGC
CCTGACCGCTCTCTTCATGCTGCCCATTTTGGTGAAGCTCTTTCGCAGTG
CCAAGAAACAAAGTCCGCTGGTCTTCCTGCGAGCGGTGGTTTTGTGCGGC
TGTTCCTCCTTCGTCTTCGGCTGGCATGTGCACGAGAAGGCCATCTTAAT
GGTGCTCCTTCCGCTCTGTCTGCTCACGCTGGTAAACCGGGAGGATGCCA
GATACGCCTATGTCCTTGGCATTGCCGGCTATTTCTCTCTCTTTCCGCTG
CTCTTCGATGCGGATCTGTACATTCCCCGGTATTCCCTGTACATGTCGTA
CGTGGCCATGATGTACGGCCAGCTGTATCGCATCTTCCCCGGCTTCCGAG
GCTTCCACACGCTGGAGTGGCTATACATGCTGGGCTTCATGGCTATTCCG
CTGTACGAGCATCTGCTCTCTTTCCTGCTGCACCTGGACCAGCGCCTGCC
CTTCTTGCCCCTACTGCTGACCTCCGTGTACTCGGCGTTGGGAGTGCTCT
ACTTCTTTGGGGCCTACTATCTGTACGCTCTGGGCATTAGCTGGGGCAAG
GTGCCCATCGCATCGTCCACATCCGCGGCCGCTGTTAAGAGAAAACGAAA
AACCAAATAAACGGAGCGCTATAAAGGGCTTCAGCAGAAATCCGCAATTG
GTCACGTCTTGCATTCAGAGTGGTAGTGCTGGTGGTGCAGCCGAGCAGTC
TTCAAGGCGCCTGGCGCAACAGCCAGTTCGGCGCCGCTGGACGGGATTCT
CTGGTCCGATCGGCACAATGGACAACGAACAATGGCTGTTAAGCAGAATT
CGGTGGGCAGGTAGCGGTCACCGGCGGCGTCTAAGGTGCCACGTACCTGT
TGGCACGACCAGATTATGGCCTTTTGGGCCATAAAACAGGTACGAGGCGG
AATAGTCGGCCGGCCGTCCGTCCGAGTGGGTGACATTCCTGGAAAAACCG
TGGAAAACACGCTGGAGCTGAATGAATAAGTGTATATCAATTGCCAGCCT
GGGCAGGGAATACTTCAGTTGACGAGCTTCCGTCCAGACGAACAGATCGA
CATGCAGATGCACATGGAACTCTCCTATGGCCGCGGCTACGATCCAATCG
GGAGGCAACCACCGTCTCTTCCTCCTCCGTCGCAACAGCACTGGTCCAGC
AATGGGTTCTCCGACGACTCCGCTTCCTGCTTCCGTCGGGGATCCTATAT
TGAACTGGCCAGCGGAGCCATGCGTCGCGTGGAGGACATACGCACCGAGG
ACTTCATCCAGTCGGCGCTGCGCAGTCAACTATTTGAGCTGCGAGAGGCG
ACAGTAGTGAGGATAGACTGGAGTGGATGCCCCAGCCTGGTGACACTCAC
CTTCAGCTACGACACACACCACGCCAAGATGGACTTGCAGGTGCAGCCGG
GTCATCCAATGTTTGTTTACGGACAGGGCTGGGCCTCCTGCGATCCACAG
TTGTCGCTGCAGCTGTACGAGCTCAAATGCCAGCAGCTGCAGGTGGGCGA
CATATGTTTGTCGCTGGTGCCAAACGAGCAGCCCGCCGCACCATGTCCGC
CTCAGCCGGCGCCGCCACCGCCGTGTCCGCCTCCTTCTCTGCCCCCGTCC
ATGGAAATGCCAGTGCCGATGGGTTCTCCGCCTACCGGAAGCTATGGATT
TCTGCCGTTTAAGCATCCGTACGAGATGTACGCCCAAATGGCCAGTTTTG
TGGCCGTGTACACCCAGCACATGATGGGAAAGCTAAACTATTAAGCCACA
AATTTGGTGATTTAACTGGCGTTTCAGGAATATATTCAACGCTATTCCTT
GAGTACGCCACGCATTTACAAATTTAATCTAGGTACAAAAATCACAATGT
ATTTTGCTTAATTTTCTGAAATAAAGTTTAAAGTAGCTGTAAAAAAAAAA
AAAAAAAAAA

IP08458.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:15:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG4542-RB 2892 CG4542-RB 1..2892 1..2892 14460 100 Plus
Atx-1-RB 2906 Atx-1-RB 15..2906 1..2892 14460 100 Plus
CG4542-RA 1632 CG4542-RA 1..1632 9..1640 8160 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:51:49
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 6714526..6715510 1168..2152 4895 99.8 Plus
chrX 22417052 chrX 6713371..6714285 143..1057 4470 99.2 Plus
chrX 22417052 chrX 6715845..6716358 2377..2890 2510 99.2 Plus
chrX 22417052 chrX 6715568..6715797 2153..2382 1120 99.1 Plus
chrX 22417052 chrX 6713174..6713315 1..142 710 100 Plus
chrX 22417052 chrX 6714349..6714459 1058..1168 540 99.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:56:08 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:51:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6822371..6823355 1168..2152 4925 100 Plus
X 23542271 X 6821216..6822130 143..1057 4575 100 Plus
X 23542271 X 6823690..6824205 2377..2892 2580 100 Plus
X 23542271 X 6823413..6823642 2153..2382 1135 99.6 Plus
X 23542271 X 6821019..6821160 1..142 710 100 Plus
X 23542271 X 6822194..6822304 1058..1168 555 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:09:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 6830469..6831453 1168..2152 4925 100 Plus
X 23527363 X 6829314..6830228 143..1057 4575 100 Plus
X 23527363 X 6831788..6832303 2377..2892 2580 100 Plus
X 23527363 X 6831511..6831740 2153..2382 1135 99.5 Plus
X 23527363 X 6829117..6829258 1..142 710 100 Plus
X 23527363 X 6830292..6830402 1058..1168 555 100 Plus
Blast to na_te.dros performed on 2019-03-15 15:51:48 has no hits.

IP08458.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:52:34 Download gff for IP08458.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 6714349..6714459 1058..1168 99 -> Plus
chrX 6713174..6713315 1..142 100 -> Plus
chrX 6713371..6714285 143..1057 99 -> Plus
chrX 6714527..6715510 1169..2152 99 -> Plus
chrX 6715568..6715793 2153..2378 99 -> Plus
chrX 6715847..6716358 2379..2890 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:36:57 Download gff for IP08458.complete
Subject Subject Range Query Range Percent Splice Strand
CG4542-RB 1..1536 75..1610 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:26:28 Download gff for IP08458.complete
Subject Subject Range Query Range Percent Splice Strand
CG4542-RA 1..1536 75..1610 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:44:13 Download gff for IP08458.complete
Subject Subject Range Query Range Percent Splice Strand
CG4542-RA 1..1536 75..1610 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:46:33 Download gff for IP08458.complete
Subject Subject Range Query Range Percent Splice Strand
CG4542-RB 1..1536 75..1610 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:19:17 Download gff for IP08458.complete
Subject Subject Range Query Range Percent Splice Strand
xit-RA 1..1536 75..1610 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:54:59 Download gff for IP08458.complete
Subject Subject Range Query Range Percent Splice Strand
Atx-1-RB 1..2890 1..2890 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:26:28 Download gff for IP08458.complete
Subject Subject Range Query Range Percent Splice Strand
CG4542-RA 1..1637 1..1637 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:44:13 Download gff for IP08458.complete
Subject Subject Range Query Range Percent Splice Strand
CG4542-RA 4..1640 1..1637 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:46:34 Download gff for IP08458.complete
Subject Subject Range Query Range Percent Splice Strand
Atx-1-RB 1..2890 1..2890 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:19:17 Download gff for IP08458.complete
Subject Subject Range Query Range Percent Splice Strand
xit-RA 4..1640 1..1637 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:52:34 Download gff for IP08458.complete
Subject Subject Range Query Range Percent Splice Strand
X 6821019..6821160 1..142 100 -> Plus
X 6821216..6822130 143..1057 100 -> Plus
X 6822194..6822304 1058..1168 100 -> Plus
X 6822372..6823355 1169..2152 100 -> Plus
X 6823413..6823638 2153..2378 100 -> Plus
X 6823692..6824203 2379..2890 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:52:34 Download gff for IP08458.complete
Subject Subject Range Query Range Percent Splice Strand
X 6821019..6821160 1..142 100 -> Plus
X 6821216..6822130 143..1057 100 -> Plus
X 6822194..6822304 1058..1168 100 -> Plus
X 6822372..6823355 1169..2152 100 -> Plus
X 6823413..6823638 2153..2378 100 -> Plus
X 6823692..6824203 2379..2890 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:52:34 Download gff for IP08458.complete
Subject Subject Range Query Range Percent Splice Strand
X 6821019..6821160 1..142 100 -> Plus
X 6821216..6822130 143..1057 100 -> Plus
X 6822194..6822304 1058..1168 100 -> Plus
X 6822372..6823355 1169..2152 100 -> Plus
X 6823413..6823638 2153..2378 100 -> Plus
X 6823692..6824203 2379..2890 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:44:13 Download gff for IP08458.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6715052..6715193 1..142 100 -> Plus
arm_X 6715249..6716163 143..1057 100 -> Plus
arm_X 6716227..6716337 1058..1168 100 -> Plus
arm_X 6716405..6717388 1169..2152 100 -> Plus
arm_X 6717446..6717671 2153..2378 100 -> Plus
arm_X 6717725..6718236 2379..2890 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:53:19 Download gff for IP08458.complete
Subject Subject Range Query Range Percent Splice Strand
X 6829117..6829258 1..142 100 -> Plus
X 6829314..6830228 143..1057 100 -> Plus
X 6830292..6830402 1058..1168 100 -> Plus
X 6830470..6831453 1169..2152 100 -> Plus
X 6831511..6831736 2153..2378 100 -> Plus
X 6831790..6832301 2379..2890 100   Plus

IP08458.hyp Sequence

Translation from 2 to 1609

> IP08458.hyp
RTALTADKECIESKLQSQSLRETKMKDLFWHLVGIATGLKILLIPAYHST
DFEVHRNWLAITHSLPLNQWYVDATSEWTLDYPPFFAYFEWLLSQVAKYV
DPRMLVVDNLNYESKATVYFQRLSVIVTDLVYVLGVRSCLGSLGLGRDTQ
QFFAASMLLLLNVGLIFVDHIHFQYNGLLFGILLLSIGSLIRQRFLWSAF
AFAVLLNFKHIFLYMAPAFGVYLLRFYCLEQASVVSAVGAVVKLLVVGLT
PFAVSFGPFWQQLPQVLSRLFPFKRGLTHAYWAPNFWALYNAADKLAAGV
LKVQDGGASTTSGLVQEVRHSVLPAITPPVTFALTALFMLPILVKLFRSA
KKQSPLVFLRAVVLCGCSSFVFGWHVHEKAILMVLLPLCLLTLVNREDAR
YAYVLGIAGYFSLFPLLFDADLYIPRYSLYMSYVAMMYGQLYRIFPGFRG
FHTLEWLYMLGFMAIPLYEHLLSFLLHLDQRLPFLPLLLTSVYSALGVLY
FFGAYYLYALGISWGKVPIASSTSAAAVKRKRKTK*

IP08458.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:37:34
Subject Length Description Subject Range Query Range Score Percent Strand
xit-PA 511 CG4542-PA 1..511 25..535 2661 100 Plus
gny-PB 475 CG5091-PB 30..472 45..522 367 28.4 Plus
gny-PA 475 CG5091-PA 30..472 45..522 367 28.4 Plus

IP08458.pep Sequence

Translation from 2051 to 2743

> IP08458.pep
MQMHMELSYGRGYDPIGRQPPSLPPPSQQHWSSNGFSDDSASCFRRGSYI
ELASGAMRRVEDIRTEDFIQSALRSQLFELREATVVRIDWSGCPSLVTLT
FSYDTHHAKMDLQVQPGHPMFVYGQGWASCDPQLSLQLYELKCQQLQVGD
ICLSLVPNEQPAAPCPPQPAPPPPCPPPSLPPSMEMPVPMGSPPTGSYGF
LPFKHPYEMYAQMASFVAVYTQHMMGKLNY*

IP08458.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:06:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21166-PA 241 GF21166-PA 1..220 1..227 670 59.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:06:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19615-PA 227 GG19615-PA 1..227 3..230 876 84.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:06:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24531-PA 212 GH24531-PA 17..207 39..226 466 51.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:02:44
Subject Length Description Subject Range Query Range Score Percent Strand
Atx-1-PB 230 CG4547-PB 1..230 1..230 1266 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:06:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21611-PA 187 GI21611-PA 10..185 39..228 540 56.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:06:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23042-PA 226 GA23042-PA 1..224 1..228 606 58 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:06:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12535-PA 230 GM12535-PA 1..218 1..218 912 94 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:06:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16817-PA 280 GD16817-PA 51..280 1..230 1172 96.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:06:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16549-PA 191 GJ16549-PA 15..191 37..229 556 56 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:06:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16392-PA 486 GK16392-PA 319..484 40..228 556 59.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:06:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16776-PA 229 GE16776-PA 1..229 1..230 941 89.1 Plus