Clone IP08644 Report

Search the DGRC for IP08644

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:86
Well:44
Vector:pOT2
Associated Gene/TranscriptGpb5-RA
Protein status:IP08644.pep: gold
Preliminary Size:635
Sequenced Size:690

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG40041 2005-01-01 Successful iPCR screen
Gpb5 2008-04-29 Release 5.5 accounting
Gpb5 2008-08-15 Release 5.9 accounting
Gpb5 2008-12-18 5.12 accounting

Clone Sequence Records

IP08644.complete Sequence

690 bp (690 high quality bases) assembled on 2005-03-06

GenBank Submission: BT023078

> IP08644.complete
TTTCACTTGTAACTCAGTTGATAAGCAGAAGCTGCAGCAAAAACTATGTT
GGCGGATAGTGCAACTTTGACTTTAGCTATCTTTGTAGGTACGTCTGTTG
TGCTTGTTTCGGTTTCATCTTCAAGTTTGTCGGAAATTAAGCCGATGAAC
AACGGACATATCGTGACGCCTTTGGGATGCCATCGTCGTGTATACACGTA
TAAAGTGACACAGTCCGATCTTCAAGGACACGAGTGTTGGGACTATGTAA
GCGTTTGGTCGTGTTGGGGACGATGCGACTCAAGCGAAATTTCCGATTGG
AAGTTTCCTTACAAGCGTTCGTTCCATCCTGTTTGTGTCCACGCCCAGCG
GCAGCTGGTAGTAGCTATCCTAAAGAATTGTCACCCTAAAGCAGAGGACA
GCGTAAGCAAGTACCAGTACATGGAGGCAGTGAACTGTCACTGCCAGACG
TGCTCCACACAGGATACCAGCTGCGAAGCTCCGGCCAATAATGAAATGGC
TGGGGGCAGCAGGGCAATCATGGTAGGCGCCGATACCAAAAACTTGGACT
ATTAGCGAGTTTGGAAATTGGGTTCCTAACTAAATTGCGTGGGGGAATGT
GATGGCTTTATCTACAACAGCAAGTTAATGCAAAAATGCTTAGTATAAAA
TGCAATAAAACAAAATAAAATTAAAAAAAAAAAAAAAAAA

IP08644.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:48:13
Subject Length Description Subject Range Query Range Score Percent Strand
Gpb5-RA 891 Gpb5-RA 220..891 1..672 3360 100 Plus
Gpb5.a 678 Gpb5.a 102..678 77..653 2885 100 Plus
Gpb5-RC 557 Gpb5-RC 47..557 69..579 2555 100 Plus
Gpb5.a 678 Gpb5.a 34..101 1..68 340 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:13:13
Subject Length Description Subject Range Query Range Score Percent Strand
chr2LHet 368865 chr2LHet 167407..168010 69..672 3020 100 Plus
chr2LHet 368865 chr2LHet 167279..167347 1..69 345 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:56:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:13:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 23311861..23312468 69..676 3040 100 Plus
2L 23513712 2L 23311733..23311801 1..69 345 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:37:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 23311861..23312468 69..676 3040 100 Plus
2L 23513712 2L 23311733..23311801 1..69 345 100 Plus
Blast to na_te.dros performed on 2019-03-16 10:13:12 has no hits.

IP08644.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:14:13 Download gff for IP08644.complete
Subject Subject Range Query Range Percent Splice Strand
chr2LHet 167279..167346 1..68 100 -> Plus
chr2LHet 167407..168010 69..672 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:37:29 Download gff for IP08644.complete
Subject Subject Range Query Range Percent Splice Strand
Gpb5-RA 1..510 46..555 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:18:15 Download gff for IP08644.complete
Subject Subject Range Query Range Percent Splice Strand
Gpb5-RA 1..510 46..555 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:57:38 Download gff for IP08644.complete
Subject Subject Range Query Range Percent Splice Strand
Gpb5-RA 1..510 46..555 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:02:31 Download gff for IP08644.complete
Subject Subject Range Query Range Percent Splice Strand
Gpb5-RA 1..510 46..555 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:00:27 Download gff for IP08644.complete
Subject Subject Range Query Range Percent Splice Strand
Gpb5-RA 1..510 46..555 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:18:05 Download gff for IP08644.complete
Subject Subject Range Query Range Percent Splice Strand
Gpb5-RA 1..672 1..672 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:18:15 Download gff for IP08644.complete
Subject Subject Range Query Range Percent Splice Strand
Gpb5-RA 1..672 1..672 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:57:38 Download gff for IP08644.complete
Subject Subject Range Query Range Percent Splice Strand
Gpb5-RA 1..657 16..672 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:02:31 Download gff for IP08644.complete
Subject Subject Range Query Range Percent Splice Strand
Gpb5-RA 1..672 1..672 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:00:27 Download gff for IP08644.complete
Subject Subject Range Query Range Percent Splice Strand
Gpb5-RA 1..657 16..672 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:14:13 Download gff for IP08644.complete
Subject Subject Range Query Range Percent Splice Strand
2L 23311733..23311800 1..68 100 -> Plus
2L 23311861..23312464 69..672 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:14:13 Download gff for IP08644.complete
Subject Subject Range Query Range Percent Splice Strand
2L 23311733..23311800 1..68 100 -> Plus
2L 23311861..23312464 69..672 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:14:13 Download gff for IP08644.complete
Subject Subject Range Query Range Percent Splice Strand
2L 23311733..23311800 1..68 100 -> Plus
2L 23311861..23312464 69..672 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:57:38 Download gff for IP08644.complete
Subject Subject Range Query Range Percent Splice Strand
2LHet 167248..167315 1..68 100 -> Plus
2LHet 167376..167979 69..672 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:38:23 Download gff for IP08644.complete
Subject Subject Range Query Range Percent Splice Strand
2L 23311861..23312464 69..672 100   Plus
2L 23311733..23311800 1..68 100 -> Plus

IP08644.pep Sequence

Translation from 45 to 554

> IP08644.pep
MLADSATLTLAIFVGTSVVLVSVSSSSLSEIKPMNNGHIVTPLGCHRRVY
TYKVTQSDLQGHECWDYVSVWSCWGRCDSSEISDWKFPYKRSFHPVCVHA
QRQLVVAILKNCHPKAEDSVSKYQYMEAVNCHCQTCSTQDTSCEAPANNE
MAGGSRAIMVGADTKNLDY*

IP08644.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:56:57
Subject Length Description Subject Range Query Range Score Percent Strand
Gpb5-PA 169 CG40041-PA 1..169 1..169 918 100 Plus
Gpb5-PC 169 CG40041-PC 9..169 9..169 882 100 Plus
Gpb5-PD 136 CG40041-PD 1..136 34..169 771 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:27:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17479-PA 167 GI17479-PA 3..167 6..169 596 64.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:27:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA30008-PA 170 GA30008-PA 1..170 2..169 660 70.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:27:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14991-PA 167 GJ14991-PA 3..167 6..169 580 63.7 Plus

IP08644.hyp Sequence

Translation from 45 to 554

> IP08644.hyp
MLADSATLTLAIFVGTSVVLVSVSSSSLSEIKPMNNGHIVTPLGCHRRVY
TYKVTQSDLQGHECWDYVSVWSCWGRCDSSEISDWKFPYKRSFHPVCVHA
QRQLVVAILKNCHPKAEDSVSKYQYMEAVNCHCQTCSTQDTSCEAPANNE
MAGGSRAIMVGADTKNLDY*

IP08644.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:55:32
Subject Length Description Subject Range Query Range Score Percent Strand
Gpb5-PA 169 CG40041-PA 1..169 1..169 918 100 Plus
Gpb5-PC 169 CG40041-PC 9..169 9..169 882 100 Plus
Gpb5-PD 136 CG40041-PD 1..136 34..169 771 100 Plus