Clone IP08727 Report

Search the DGRC for IP08727

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:87
Well:27
Vector:pOT2
Associated Gene/TranscriptRab9Fb-RA
Protein status:IP08727.pep: gold
Preliminary Size:645
Sequenced Size:898

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG32670 2005-01-01 Successful iPCR screen
Rab9Fb 2008-04-29 Release 5.5 accounting
Rab9Fb 2008-08-15 Release 5.9 accounting
Rab9Fb 2008-12-18 5.12 accounting

Clone Sequence Records

IP08727.complete Sequence

898 bp (898 high quality bases) assembled on 2006-03-22

GenBank Submission: BT024998

> IP08727.complete
AACAAGCCAAGCTAAATTTGTCACTTCAGTTGAATCGTTTTACATATTAA
ACCAAACCGAATTAACGATGAGCCAATACGACTATCTGTTTAAGATTCTC
GTCCTGGGTGACATCGGCGTGGGCAAATCCTGCCTGCTGATGCGTTTCTC
GGATAACCGATTCACCGAGAAACACGTGTGCACGGTGGGCATGGATTTCA
GGGTGCGCAACGTGGAGTTGGCCGGTCGGATGGTTATGCTGCAGATCTGG
GATACCGCCGGCGATGAGCGCTTTAAGTCGCTGCTGCCATCCTATTATCG
CGGTGCCCATGGCATACTGCTCGTTTACGACATAACGTCGTCCAAAAGTT
TCCGAAACATCGATGGCTGGCTGAAGGAGATACGGCGCATGTCTTCGGAA
AGTGTGAACGTCATGCTGGTGGGCAACAAGTGTGATGATCTGGATAATCG
TCAGGTGCGCATGGAGCAGGGTTTCAACTATGCCAATCATCGGGCACTCG
GCTTTTATGAGGTTTCCGCCAAGAGTGGCGCGAATGTAAATGACGTATTC
AACATGTTGTCAGTTGGCATATACAATCGTCTTGTGATTCATACCCCAAA
TCGCTTGTCAGGTGGGCAAGAAACGGAGGACACTGCAGAGCCACCGGATG
AACCAATCAATTTAGCTGGCAAAGATCGGCAGAGGGCCAAAGACAGCAAT
ACCTGCTGTTAAGCATCTCGACTTCATTTGACATTATTATCATAAAAATA
ATATTTTAAAATTTCTATACTTGCACAACAAGCTCCGTAAACTTCTTGCC
CAATGAAAAAATAAAACATTTGTAATGTGAAACGGGAAATTTGCGAAAAA
TTAACATAAATAAAACTTTCCCAGTTTGAAAAAAAAAAAAAAAAAAAA

IP08727.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:38:54
Subject Length Description Subject Range Query Range Score Percent Strand
Rab9Fb-RA 880 Rab9Fb-RA 1..880 1..880 4400 100 Plus
Rab9Db-RA 871 Rab9Db-RA 242..555 236..549 775 83.1 Plus
Rab9Db-RA 871 Rab9Db-RA 1..224 1..224 760 89.2 Plus
Rab9D-RA 897 Rab9D-RA 268..581 236..549 760 82.8 Plus
Rab9D-RA 897 Rab9D-RA 27..250 1..224 715 87.9 Plus
Rab9Db-RA 871 Rab9Db-RA 715..853 724..864 440 88.6 Plus
Rab9D-RA 897 Rab9D-RA 741..879 724..864 440 88.6 Plus
Rab9D-RA 897 Rab9D-RA 650..738 615..703 220 83.1 Plus
Rab9Db-RA 871 Rab9Db-RA 624..712 615..703 205 82 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:15:19
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 10842923..10843800 878..1 4390 100 Minus
chrX 22417052 chrX 10308906..10309717 1..800 1920 83.8 Plus
chrX 22417052 chrX 10513739..10514591 864..1 1705 80.8 Minus
chrX 22417052 chrX 10480481..10481333 1..864 1660 80.4 Plus
chrX 22417052 chrX 10552340..10553192 864..1 1660 80.4 Minus
chrX 22417052 chrX 10841492..10842344 864..1 1645 80.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:56:59 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:15:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10951607..10952486 880..1 4400 100 Minus
X 23542271 X 10417429..10418240 1..800 1920 83.8 Plus
X 23542271 X 10622373..10623225 864..1 1705 80.8 Minus
X 23542271 X 10589115..10589967 1..864 1660 80.4 Plus
X 23542271 X 10660973..10661825 864..1 1660 80.4 Minus
X 23542271 X 10950178..10951030 864..1 1645 80.3 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:29:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 10959705..10960584 880..1 4400 100 Minus
X 23527363 X 10425527..10426106 1..580 1715 86.3 Plus
X 23527363 X 10630769..10631082 549..236 775 83.1 Minus
X 23527363 X 10597454..10597767 236..549 760 82.8 Plus
X 23527363 X 10631100..10631323 224..1 760 89.2 Minus
X 23527363 X 10958574..10958887 549..236 760 82.8 Minus
X 23527363 X 10669369..10669682 549..236 760 82.8 Minus
X 23527363 X 10958905..10959128 224..1 715 87.9 Minus
X 23527363 X 10669700..10669923 224..1 715 87.9 Minus
X 23527363 X 10597213..10597436 1..224 715 87.9 Plus
X 23527363 X 10597979..10598065 778..864 330 91.9 Plus
X 23527363 X 10630471..10630557 864..778 330 91.9 Minus
X 23527363 X 10958276..10958362 864..778 330 91.9 Minus
X 23527363 X 10669071..10669157 864..778 330 91.9 Minus
X 23527363 X 10426226..10426300 692..769 245 89.7 Plus
X 23527363 X 10597836..10597924 615..703 220 83.1 Plus
X 23527363 X 10958417..10958505 703..615 220 83.1 Minus
X 23527363 X 10669212..10669300 703..615 220 83.1 Minus
X 23527363 X 10630612..10630700 703..615 205 82 Minus
X 23527363 X 10597927..10597972 724..769 185 93.4 Plus
X 23527363 X 10630564..10630609 769..724 185 93.4 Minus
X 23527363 X 10958369..10958414 769..724 185 93.4 Minus
X 23527363 X 10669164..10669209 769..724 185 93.4 Minus
Blast to na_te.dros performed on 2019-03-16 16:15:17 has no hits.

IP08727.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:16:06 Download gff for IP08727.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 10842969..10843800 1..832 96   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:37:42 Download gff for IP08727.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9Fb-RA 1..645 68..712 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:05:01 Download gff for IP08727.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9Fb-RA 1..645 68..712 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:06:30 Download gff for IP08727.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9Fb-RA 1..645 68..712 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:50:06 Download gff for IP08727.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9Fb-RA 1..645 68..712 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:24:11 Download gff for IP08727.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9Fb-RA 1..645 68..712 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:52:34 Download gff for IP08727.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9Fb-RA 1..878 1..878 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:05:01 Download gff for IP08727.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9Fb-RA 1..878 1..878 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:06:30 Download gff for IP08727.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9Fb-RA 1..878 1..878 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:50:06 Download gff for IP08727.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9Fb-RA 1..878 1..878 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:24:11 Download gff for IP08727.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9Fb-RA 1..878 1..878 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:16:06 Download gff for IP08727.complete
Subject Subject Range Query Range Percent Splice Strand
X 10951609..10952486 1..878 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:16:06 Download gff for IP08727.complete
Subject Subject Range Query Range Percent Splice Strand
X 10951609..10952486 1..878 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:16:06 Download gff for IP08727.complete
Subject Subject Range Query Range Percent Splice Strand
X 10951609..10952486 1..878 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:06:30 Download gff for IP08727.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10845642..10846519 1..878 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:24:49 Download gff for IP08727.complete
Subject Subject Range Query Range Percent Splice Strand
X 10959707..10960584 1..878 100   Minus

IP08727.hyp Sequence

Translation from 0 to 711

> IP08727.hyp
TSQAKFVTSVESFYILNQTELTMSQYDYLFKILVLGDIGVGKSCLLMRFS
DNRFTEKHVCTVGMDFRVRNVELAGRMVMLQIWDTAGDERFKSLLPSYYR
GAHGILLVYDITSSKSFRNIDGWLKEIRRMSSESVNVMLVGNKCDDLDNR
QVRMEQGFNYANHRALGFYEVSAKSGANVNDVFNMLSVGIYNRLVIHTPN
RLSGGQETEDTAEPPDEPINLAGKDRQRAKDSNTCC*

IP08727.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:56:32
Subject Length Description Subject Range Query Range Score Percent Strand
Rab9Fb-PA 214 CG32670-PA 1..214 23..236 1125 100 Plus
RabX2-PA 195 CG2885-PA 1..195 23..216 687 67.2 Plus
Rab9Db-PA 197 CG9807-PA 1..197 23..216 577 60.9 Plus
Rab9E-PA 197 CG32673-PA 1..197 23..216 573 60.4 Plus
Rab9Fa-PA 197 CG32671-PA 1..197 23..216 571 59.9 Plus

IP08727.pep Sequence

Translation from 67 to 711

> IP08727.pep
MSQYDYLFKILVLGDIGVGKSCLLMRFSDNRFTEKHVCTVGMDFRVRNVE
LAGRMVMLQIWDTAGDERFKSLLPSYYRGAHGILLVYDITSSKSFRNIDG
WLKEIRRMSSESVNVMLVGNKCDDLDNRQVRMEQGFNYANHRALGFYEVS
AKSGANVNDVFNMLSVGIYNRLVIHTPNRLSGGQETEDTAEPPDEPINLA
GKDRQRAKDSNTCC*

IP08727.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 15:29:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19340-PA 237 GF19340-PA 1..207 1..206 589 58.2 Plus
Dana\GF17263-PA 205 GF17263-PA 7..176 3..172 492 50.6 Plus
Dana\GF20241-PA 204 GF20241-PA 6..203 4..214 470 43.6 Plus
Dana\GF10843-PA 207 GF10843-PA 5..169 4..168 459 49.7 Plus
Dana\GF20451-PA 200 GF20451-PA 5..191 4..196 431 43 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 15:29:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18360-PA 218 GG18360-PA 1..218 1..214 789 69.3 Plus
Dere\GG14761-PA 205 GG14761-PA 7..176 3..172 493 50.6 Plus
Dere\GG19277-PA 204 GG19277-PA 6..203 4..214 463 43.1 Plus
Dere\GG13365-PA 207 GG13365-PA 5..169 4..168 459 49.7 Plus
Dere\GG23219-PA 213 GG23219-PA 3..171 4..172 423 45.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 15:29:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18937-PA 205 GH18937-PA 7..176 3..172 495 51.2 Plus
Dgri\GH12621-PA 204 GH12621-PA 6..203 4..214 469 45 Plus
Dgri\GH16908-PA 207 GH16908-PA 5..169 4..168 453 49.1 Plus
Dgri\GH21751-PA 213 GH21751-PA 3..171 4..172 423 45.6 Plus
Dgri\GH24326-PA 201 GH24326-PA 4..200 3..214 422 40.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:59:39
Subject Length Description Subject Range Query Range Score Percent Strand
Rab9Fb-PA 214 CG32670-PA 1..214 1..214 1125 100 Plus
RabX2-PA 195 CG2885-PA 1..195 1..194 687 67.2 Plus
Rab9Db-PA 197 CG9807-PA 1..197 1..194 577 60.9 Plus
Rab9E-PA 197 CG32673-PA 1..197 1..194 573 60.4 Plus
Rab9Fa-PA 197 CG32671-PA 1..197 1..194 571 59.9 Plus
Rab9D-PA 197 CG32678-PA 1..197 1..194 568 60.4 Plus
Rab1-PA 205 CG3320-PA 7..176 3..172 474 50.6 Plus
Rab10-PA 204 CG17060-PA 6..203 4..214 459 43.6 Plus
Rab8-PC 207 CG8287-PC 5..169 4..168 445 49.7 Plus
Rab8-PA 207 CG8287-PA 5..169 4..168 445 49.7 Plus
Rab35-PB 201 CG9575-PB 5..191 4..196 418 43 Plus
Rab35-PD 201 CG9575-PD 5..191 4..196 418 43 Plus
Rab35-PA 201 CG9575-PA 5..191 4..196 418 43 Plus
Rab2-PB 213 CG3269-PB 3..171 4..172 416 45.6 Plus
Rab2-PA 213 CG3269-PA 3..171 4..172 416 45.6 Plus
Rab19-PB 219 CG7062-PP3-RB 18..216 4..213 406 37.7 Plus
Rab19-PA 219 CG7062-PA 18..216 4..213 406 37.7 Plus
Rab3-PB 220 CG7576-PB 18..210 4..193 400 39.9 Plus
Rab3-PA 220 CG7576-PA 18..210 4..193 400 39.9 Plus
Rab4-PA 213 CG4921-PA 5..211 4..213 382 41 Plus
Rab4-PB 213 CG4921-PB 5..211 4..213 382 41 Plus
Rab14-PD 215 CG4212-PD 8..215 4..213 382 36.5 Plus
Rab14-PA 215 CG4212-PA 8..215 4..213 382 36.5 Plus
Rab14-PB 239 CG4212-PB 32..239 4..213 382 36.5 Plus
Rab11-PA 214 CG5771-PA 7..173 3..169 380 42.5 Plus
Rab11-PB 214 CG5771-PB 7..173 3..169 380 42.5 Plus
RabX4-PA 213 CG31118-PA 9..167 8..165 368 43.4 Plus
Rab30-PD 223 CG9100-PD 1..160 1..161 366 43.5 Plus
Rab30-PC 223 CG9100-PC 1..160 1..161 366 43.5 Plus
Rab30-PB 223 CG9100-PB 1..160 1..161 366 43.5 Plus
Rab30-PA 223 CG9100-PA 1..160 1..161 366 43.5 Plus
Rab35-PC 190 CG9575-PC 8..180 18..196 365 41.9 Plus
Rab26-PE 410 CG34410-PE 208..378 3..171 363 43.9 Plus
Rab26-PD 410 CG34410-PD 208..378 3..171 363 43.9 Plus
Rab26-PC 410 CG34410-PC 208..378 3..171 363 43.9 Plus
Rab27-PC 230 CG14791-PC 8..188 4..179 362 44.2 Plus
Rab39-PB 218 CG12156-PB 6..179 4..172 339 42.5 Plus
Rab39-PA 218 CG12156-PA 6..179 4..172 339 42.5 Plus
Rab27-PB 236 CG14791-PB 19..194 9..179 334 42.6 Plus
Rab6-PB 208 CG6601-PB 13..173 8..168 333 41.6 Plus
Rab6-PA 208 CG6601-PA 13..173 8..168 333 41.6 Plus
Rab5-PI 219 CG3664-PI 30..183 8..161 333 41.6 Plus
Rab5-PH 219 CG3664-PH 30..183 8..161 333 41.6 Plus
Rab5-PG 219 CG3664-PG 30..183 8..161 333 41.6 Plus
Rab5-PE 219 CG3664-PE 30..183 8..161 333 41.6 Plus
Rab5-PC 219 CG3664-PC 30..183 8..161 333 41.6 Plus
Rab5-PD 219 CG3664-PD 30..183 8..161 333 41.6 Plus
Rab5-PF 219 CG3664-PF 30..183 8..161 333 41.6 Plus
Rab5-PB 219 CG3664-PB 30..183 8..161 333 41.6 Plus
Rab5-PA 219 CG3664-PA 30..183 8..161 333 41.6 Plus
Rab18-PA 197 CG3129-PA 3..158 5..161 326 45.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 15:29:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10837-PA 205 GI10837-PA 7..176 3..172 494 50.6 Plus
Dmoj\GI11034-PA 204 GI11034-PA 6..203 4..214 466 44.5 Plus
Dmoj\GI13664-PA 207 GI13664-PA 5..169 4..168 453 49.1 Plus
Dmoj\GI14806-PA 201 GI14806-PA 4..200 3..214 424 41 Plus
Dmoj\GI19298-PA 213 GI19298-PA 3..171 4..172 423 45.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 15:29:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL27164-PA 205 GL27164-PA 7..200 3..196 494 45.9 Plus
Dper\GL15675-PA 207 GL15675-PA 5..199 4..210 457 44.4 Plus
Dper\GL14977-PA 211 GL14977-PA 3..210 8..214 449 41.8 Plus
Dper\GL11116-PA 213 GL11116-PA 3..171 4..172 423 45.6 Plus
Dper\GL12921-PA 200 GL12921-PA 5..191 4..196 422 43 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 15:29:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17362-PA 205 GA17362-PA 7..200 3..196 494 45.9 Plus
Dpse\GA26078-PA 204 GA26078-PA 6..203 4..214 466 44.5 Plus
Dpse\GA23499-PA 207 GA23499-PA 5..199 4..210 457 44.4 Plus
Dpse\GA22382-PA 205 GA22382-PA 3..185 8..186 444 44.3 Plus
Dpse\GA21885-PA 200 GA21885-PA 5..191 4..196 427 43.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 15:29:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11275-PA 215 GM11275-PA 1..215 1..214 952 83.3 Plus
Dsec\GM11294-PA 206 GM11294-PA 1..206 1..214 615 55.6 Plus
Dsec\GM11425-PA 169 GM11425-PA 1..163 1..163 530 60.1 Plus
Dsec\GM15089-PA 205 GM15089-PA 7..176 3..172 493 50.6 Plus
Dsec\GM23016-PA 204 GM23016-PA 6..203 4..214 463 43.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 15:29:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11278-PA 215 GD11278-PA 1..215 1..214 969 84.2 Plus
Dsim\GD16021-PA 206 GD16021-PA 1..206 1..214 647 57.5 Plus
Dsim\GD16978-PA 207 GD16978-PA 1..207 1..214 624 56.3 Plus
Dsim\GD19996-PA 205 GD19996-PA 7..176 3..172 493 50.6 Plus
Dsim\GD12244-PA 207 GD12244-PA 5..169 4..168 459 49.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 15:29:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14443-PA 205 GJ14443-PA 7..176 3..172 494 50.6 Plus
Dvir\GJ14874-PA 202 GJ14874-PA 5..172 6..173 468 50.6 Plus
Dvir\GJ15815-PA 204 GJ15815-PA 6..203 4..214 464 45 Plus
Dvir\GJ13999-PA 207 GJ13999-PA 5..169 4..168 453 49.1 Plus
Dvir\GJ22175-PA 213 GJ22175-PA 3..171 4..172 423 45.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 15:29:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20101-PA 216 GK20101-PA 4..175 2..173 514 54.7 Plus
Dwil\GK12772-PA 205 GK12772-PA 7..176 3..172 493 50.6 Plus
Dwil\GK25049-PA 204 GK25049-PA 6..203 4..214 470 45 Plus
Dwil\GK17214-PA 207 GK17214-PA 5..198 4..195 460 44.9 Plus
Dwil\GK16335-PA 200 GK16335-PA 5..199 4..214 435 43.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 15:29:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17848-PA 219 GE17848-PA 1..219 1..214 772 67.1 Plus
Dyak\Rab1-PA 205 GE25003-PA 7..176 3..172 493 50.6 Plus
Dyak\GE17866-PA 204 GE17866-PA 6..203 4..214 463 43.1 Plus
Dyak\GE22459-PA 207 GE22459-PA 5..169 4..168 459 49.7 Plus
Dyak\GE19072-PA 213 GE19072-PA 3..171 4..172 423 45.6 Plus