Clone IP08778 Report

Search the DGRC for IP08778

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:87
Well:78
Vector:pOT2
Associated Gene/TranscriptCG9592-RB
Protein status:IP08778.pep: gold
Preliminary Size:752
Sequenced Size:853

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9592 2005-01-01 Successful iPCR screen
CG9592 2008-04-29 Release 5.5 accounting
CG9592 2008-08-15 Release 5.9 accounting
CG9592 2008-12-18 5.12 accounting

Clone Sequence Records

IP08778.complete Sequence

853 bp (853 high quality bases) assembled on 2005-03-06

GenBank Submission: BT023134

> IP08778.complete
CAAAACCTGCTCGGTTGAATTGTCGGAACCATGGTGAACGGCCGCATACC
CTCGGTCTTCTCGAAGACCTACGTGACTCCCCGTCGCCCCTATGAGAAGG
CGCGTCTGGACCAGGAGTTGAAGATCATCGGCGAGTATGGTCTGCGCAAC
AAGCGCGAAGTGTGGCGCGTCAAGTACGCCCTGGCTAAGATCCGTAAGGC
CGCTCGTGAGCTGCTGACCCTCGACGAGAAGGACGAGAAGCGTCTGTTCC
AGGGTAGTGCCCTGCGATGAATCGGATCCGAAGCGAGCAAGCAGATCAAT
CACGAAGGACGAAGATGTCAGATGTACTTTAGATGGCCTCCTCTTGCAAA
TGATACAATTAATAGAAGACCTTGAGCTGCTGCACTCGCAAGTCAACAAG
GAGTCGTGTAGAGCTCAATTAGTCCTGGCTAGAGTTAGACTGCATCAGGG
TTTTGAACGAATTCCAGCAGAGGCCCAATTGCCAAGGGGACGACCCTACA
AGGCTCTTACTCGCGTCGTAGAGAATGATAACTACTGGGGAAAGGTTTTC
AAGATGATCCGACTTCCTGTTAACCCGATCCTAGGATATCTCCTACCCGT
AAGGAATATATTCGGCTGTTTGGTGTCAGACAATTTGCGAATCGCGAATC
GGCATTGGGATAACTGTCTGGATCTGGTAGTTGAGTGTGCCAATGTCCAA
AGAAAACTTCAATCGACTATCAACTCTATAGAGAATCTGCGAAACCTTCT
TAATCAAAGGCAATGTCCTCAGATGTCAAATGATAAATTAAAAGTAATAC
TAAAATAAACTAAACAAAACACTTGATTAAATTAAAAAAAAAAAAAAAAA
AAA

IP08778.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:47:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG9592-RB 585 CG9592-RB 3..585 253..835 2915 100 Plus
RpS9-RA 922 RpS9-RA 105..369 1..265 1310 99.6 Plus
RpS9-RB 928 RpS9-RB 37..301 1..265 1310 99.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:37:27
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 14507994..14508574 253..833 2875 99.7 Plus
chr3L 24539361 chr3L 9502918..9503166 256..8 1245 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:57:05 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:37:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14517895..14518477 253..835 2915 100 Plus
3L 28110227 3L 9511053..9511301 256..8 1245 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:37:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 14510995..14511577 253..835 2915 100 Plus
3L 28103327 3L 9504153..9504401 256..8 1245 100 Minus
Blast to na_te.dros performed on 2019-03-16 08:37:25 has no hits.

IP08778.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:38:24 Download gff for IP08778.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 14507994..14508574 253..833 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:37:48 Download gff for IP08778.complete
Subject Subject Range Query Range Percent Splice Strand
CG9592-RB 1..459 350..808 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:17:51 Download gff for IP08778.complete
Subject Subject Range Query Range Percent Splice Strand
CG9592-RB 1..459 350..808 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:51:56 Download gff for IP08778.complete
Subject Subject Range Query Range Percent Splice Strand
CG9592-RB 1..459 350..808 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:02:10 Download gff for IP08778.complete
Subject Subject Range Query Range Percent Splice Strand
CG9592-RB 1..459 350..808 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:44:53 Download gff for IP08778.complete
Subject Subject Range Query Range Percent Splice Strand
CG9592-RB 1..459 350..808 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:17:32 Download gff for IP08778.complete
Subject Subject Range Query Range Percent Splice Strand
CG9592-RB 1..583 251..833 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:17:51 Download gff for IP08778.complete
Subject Subject Range Query Range Percent Splice Strand
CG9592-RB 1..583 251..833 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:51:56 Download gff for IP08778.complete
Subject Subject Range Query Range Percent Splice Strand
CG9592-RB 71..651 253..833 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:02:11 Download gff for IP08778.complete
Subject Subject Range Query Range Percent Splice Strand
CG9592-RB 1..583 251..833 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:44:53 Download gff for IP08778.complete
Subject Subject Range Query Range Percent Splice Strand
CG9592-RB 71..651 253..833 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:38:24 Download gff for IP08778.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14517895..14518475 253..833 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:38:24 Download gff for IP08778.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14517895..14518475 253..833 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:38:24 Download gff for IP08778.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14517895..14518475 253..833 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:51:56 Download gff for IP08778.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14510995..14511575 253..833 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:37:59 Download gff for IP08778.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14510995..14511575 253..833 100   Plus

IP08778.hyp Sequence

Translation from 253 to 807

> IP08778.hyp
VVPCDESDPKRASRSITKDEDVRCTLDGLLLQMIQLIEDLELLHSQVNKE
SCRAQLVLARVRLHQGFERIPAEAQLPRGRPYKALTRVVENDNYWGKVFK
MIRLPVNPILGYLLPVRNIFGCLVSDNLRIANRHWDNCLDLVVECANVQR
KLQSTINSIENLRNLLNQRQCPQMSNDKLKVILK*

IP08778.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:56:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG9592-PB 152 CG9592-PB 1..152 33..184 790 100 Plus
CG14671-PB 155 CG14671-PB 15..149 26..163 139 33.3 Plus
CG14671-PA 155 CG14671-PA 15..149 26..163 139 33.3 Plus

IP08778.pep Sequence

Translation from 349 to 807

> IP08778.pep
MIQLIEDLELLHSQVNKESCRAQLVLARVRLHQGFERIPAEAQLPRGRPY
KALTRVVENDNYWGKVFKMIRLPVNPILGYLLPVRNIFGCLVSDNLRIAN
RHWDNCLDLVVECANVQRKLQSTINSIENLRNLLNQRQCPQMSNDKLKVI
LK*

IP08778.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:26:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24605-PA 174 GF24605-PA 41..167 5..131 288 43.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:26:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH25226-PA 208 GH25226-PA 68..199 1..131 304 46.2 Plus
Dgri\GH17101-PA 208 GH17101-PA 68..199 1..131 301 46.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:00:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG9592-PB 152 CG9592-PB 1..152 1..152 790 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:26:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11707-PA 198 GI11707-PA 48..197 1..139 257 38.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:26:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21015-PA 174 GL21015-PA 34..164 1..131 354 50.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:27:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21899-PA 174 GA21899-PA 34..168 1..135 359 49.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:27:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25467-PA 178 GM25467-PA 37..170 1..136 629 91.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:27:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17947-PA 180 GD17947-PA 37..178 1..145 650 89 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:27:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11381-PA 179 GJ11381-PA 40..176 1..137 311 43.8 Plus
Dvir\GJ22706-PA 161 GJ22706-PA 24..161 1..137 136 30 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:27:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18962-PA 160 GK18962-PA 22..157 1..134 156 31.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:27:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22014-PA 173 GE22014-PA 49..173 13..137 520 80 Plus