Clone IP08837 Report

Search the DGRC for IP08837

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:88
Well:37
Vector:pOT2
Associated Gene/Transcriptdys-RB
Protein status:IP08837.pep: validated not full length
Preliminary Size:2707
Sequenced Size:3484

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG32474 2005-01-01 Successful iPCR screen
dys 2008-04-29 Release 5.5 accounting
dys 2008-08-15 Release 5.9 accounting
dys 2008-12-18 5.12 accounting

Clone Sequence Records

IP08837.complete Sequence

3484 bp (3484 high quality bases) assembled on 2005-03-24

GenBank Submission: BT022132

> IP08837.complete
AAGAGATAAGAAGAAATAAAAAGGTGGCCTGACGGCTGCACCCAACTGCA
AGGAAAACACGTGTTCTCAATTGGTGGCATATATGGGTTTATTACACCCG
AGTGCCCCCCCACCCGCACCCAAATCAATTGGTAACAAATATTTGCAAAC
GTGCGATCGACGATATGTATGCGGATAATAAACGTGGCCTAGACAAGGTG
ACGGCAGCAACCCCGCCCACCCACGCCCTCCAGCAGCAGCAGCAGCAACA
ACATCCCCACCAGCAGCAGCAGCATCTGCAGCATGTCCTGCAACTGCAGC
AGCAACAGCAGCAACACCTTCAGCAGCAGCAGCATCACTTGCAGCACCAG
ATGCATACGCATCATAACTTCCAGCAGCATGAAACGTCGGCAACAGTGTC
GCAGCAGCAGCACATGCAACAGCAGCAGCCGCAGACGACACAACAGCAAC
ATGCAACACAGCAACAGCAGCAGCAACAGCAACATACAGCCGGCATGTTT
ACAAGATTCGATGCAAACAAATCGACGAAGGGCGCCTCGAAGATGCGACG
CGATCTCATAAATGCGGAGATAGCCAATCTGAGGGATCTCCTGCCGCTGC
CCCAATCGACGCGCCAGCGCCTCTCGCAACTGCAACTGATGGCCCTCGTT
TGTGTCTATGTGCGGAAAGCCAACTACTTCCAGCAAGTTTTTAAACGTCA
CAATGCGATGCATCATCTCCATCATCAGACAGCAACACCAAATATTGGCT
TCTCAAAGGCACTCTCCGGCTTCTTGATGATGCTCACACAAAATGGCAAA
TTGCTTTATATATCGGATAATGCAGCGGAGTACTTGGGCCATTCCATGGA
GGATCTGCTGATACACGGTGACTCCGTTTACGATATCATTGACAAACAGG
ATCACGCAAACATCCAGGCCGAGCTGAATAGGAACGTGCCACCGCAGCCG
GGTGGCTCGAGTCAGGCGAGCAGCGGTGGTGCCGGTGGTGCTGGCGGTGC
CGGCGACTCAACGTCCAGCAATGGAAGTGCCGCTGGTGCCGGTGGTGCTG
GTGGCGCCTCCAGTCTCGAGGGCGAGCATCGCATGTTCCTCTGTCGCATG
AATGTTAGCCGCAATGCGCGACGGCAAATGCGTTTCGGCGATCAGAAGGT
TGTCTTGGTCCAGGGTCACTATTTGTCATTCCTGCCGCTTTGCAGTCGCA
ACGAGCCCGTCTTTTTGGCCACCTGCACTCCGATTGCCATGCCCGAAACC
AGGGAGTGTGTTGTACAAGGTGCCACCAACGTCTTCACCACCATCCATTC
AATGGACATGAAAATAGCCCATATCGATAAAAATGGCGAATTTCATTTGG
GCTATGATAAGTCGACTCTGCAAGGCACATCCTGGTACAACCTGATCCAC
AGCGATAATCTGACGGAGGCGCAAAAAAAACACAGTTTAATTATCCAATC
GGAACAAGATCGCAGTTGTATCCTTCTAGTACGAATGCAGAGATCTAGTG
GGGAATACACGTGGGTACACGTGGTTTTACAAGTGCGAGATAGTCCCGAC
TCCACGCAACAACCTGTTATCGTGTGCACAAACCAAGTACTCAACGATCG
AGAGGCCTCAATTATGCTGGCCAACTCCTGGCTGTATCACTACTATACCG
TCCAGTCGAAGATCCAGTTCGGCATGCCGCTGGACAGTGGTATCCGTGTC
CCACCGGGAACTCCCTCCAGCGGCTACTACAGTCCCCATTCATCCCATCC
ACCGGCCACTCCAGGTGGTGCAACACCCAATTTGGGCATAGCCAGTAGCT
TTGGCCCGCACCATCATCCACACCACTCGCACCACCCGCACCACCATCAT
CATCATCACCATCCGGCGACTGCTTACCATCACCATCCGCATATGGGAAC
CTATGGTGGAGTCTATCATGCGAAGGCAGCAATCGAGCTTAAGGAGGATC
AACCGCTGTTTTGCTTTCAAGAGCCCGTGGACTATAGCCAAGTAAATAGC
CACGTTAATCCTCCGAATGCAACAAGTACTCCCAATCCGCCTATCTCCAA
ATCGTCCACGCCCCCACCGCCCAAGAAGCGGGCTCGAAAACTGGAACCAC
TCTACTTACACGCCGAACGCTCTCCGGCGGCGGCGATAACTCCGGAACCG
GATTGCTATGCCATCCATACTCATCCGGCTGCTGCCTATGCCACCTCATC
GGTGGTCAGTAGTGATGCTTCAGTTATATATGCCACAATAGTGCCGACGA
GACCGAGGTTACCGAATAAATCACTGCCTCCGGATCCTGCGGATTTTATA
GAGCAATGGAATCCCAGTCCACCCTGGTCGGAATCGGCGCAAAAGGCTTC
GTTGGATAGTTTTGGATCCTCCCACGAGCTGAGTCCGTGCATCACGACCA
CGCCCCCCACGCCCACAAGTGCTACACCGCATCAAAGTGGCTTGGGCACC
ACCCAGACCATAGGACCTGCTTTCAGTTTTGAATGGATGTCAGATCCTTT
GGTACCAGTCACGTACCAGCAGTGGCCACCAACTGGTGACCATCATCAGC
ATCTTTCGCAGCACTTAAGCCAGAGTCAAAACCACCAAAATCCCCTCCAG
CAGCAGCAGCAGCACGAGCAGCTTCTACTTGGACAACAGCCGCATCTCCA
CCAGCAGCACCAGCACTTAGCACTTCATCATGGACGTGGGGAGCACTCCC
TGGAGGGGGAAAGTCAGGGGGTGGTGGTAGTGCCACCGATACCCATTTCG
ATACCGATACCAACGGCCACGGGCCATGGGGATGCCGGCGAACCGGTTGA
GGATAGAGATCCCAAAAATTAGTGACCGACCAGCAAAGCTTGGAAATACC
CAGCGATCAGAGATCGGGGATAGGAGATGGGAGATGGGATATCTGCCATG
GCGGCCAGGTGATAATCACACTTAAATTAATTGCCACTTGTCATCTTAGC
GTTTAAATTATTTTTATCTAACGAAGGAAACGCAAAACACATTCGTTTCC
TCGATACAACAGCTAATTTAAGCGATTCCCGTATAGCCCTTTTGTTTTCC
AATTCCCATTCTGTATGTGCAATCTTGAAAAAAACAAACACTTAAAAATA
AGTATGAGTCTATGAAAATAGCGCTTGGAAATTAGTTTTGCGATTGGCCC
GCAAAATACAGAAAGAGAAGCGAAAAAAAAAAACATAGGCCATGCCAAGA
GAGCTCTATTAGTTGTAGCGTTTTCATTAGCGACATTTTTATGGCGCGTG
CTTAAAGTTTTTTACGATCATTCGTATTTTTGTATCTCGCGTTCTCGTAA
CTCCGCAGATATATGTGCATCTACATTTAAATCTAGGTTAATTATATTAC
TTTATTTTATTTATTAAACACTTATTTATACACATATTTATTACTGTGCT
TTCGTATTTTGCCTATTGAATAAACAAACTTGTAAAGTATATTCGTTTGA
AGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

IP08837.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:40:27
Subject Length Description Subject Range Query Range Score Percent Strand
dys-RB 3353 dys-RB 1..3353 97..3453 16465 99.4 Plus
dys-RD 3959 dys-RD 637..3959 127..3453 16315 99.4 Plus
dys-RC 4195 dys-RC 637..3315 127..2808 13145 99.4 Plus
dys-RC 4195 dys-RC 3550..4195 2807..3453 3180 99.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:18:31
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 21900464..21901674 2808..1595 5945 99.5 Minus
chr3R 27901430 chr3R 21899581..21900229 3453..2807 3180 99.7 Minus
chr3R 27901430 chr3R 21919181..21919559 505..127 1835 98.9 Minus
chr3R 27901430 chr3R 21904889..21905191 1150..848 1515 100 Minus
chr3R 27901430 chr3R 21902543..21902729 1333..1147 935 100 Minus
chr3R 27901430 chr3R 21911158..21911341 687..504 920 100 Minus
chr3R 27901430 chr3R 21901800..21901953 1594..1441 770 100 Minus
chr3R 27901430 chr3R 21902358..21902464 1440..1334 535 100 Minus
chr3R 27901430 chr3R 11443714..11443809 1..96 480 100 Plus
chr3R 27901430 chr3R 11450730..11450825 1..96 480 100 Plus
chrU 10048995 chrU 9225452..9225550 1..99 480 99 Plus
chr3LHet 2555433 chr3LHet 67205..67303 99..1 480 99 Minus
chr2L 23010047 chr2L 1227419..1227523 1..105 480 97.1 Plus
chr2L 23010047 chr2L 19353410..19353507 1..98 475 99 Plus
chr3R 27901430 chr3R 27827440..27827536 1..97 470 99 Plus
chrU 10048995 chrU 9418336..9418432 97..1 470 99 Minus
chr3L 24539361 chr3L 22552050..22552146 1..97 470 99 Plus
chr2R 21145070 chr2R 14382311..14382407 1..97 470 99 Plus
chr3R 27901430 chr3R 13400033..13400128 1..96 465 99 Plus
chr3R 27901430 chr3R 13407043..13407138 1..96 465 99 Plus
chr3R 27901430 chr3R 21907070..21907162 849..757 465 100 Minus
chr3R 27901430 chr3R 26502404..26502499 1..96 465 99 Plus
chr3R 27901430 chr3R 26509417..26509512 1..96 465 99 Plus
chr3R 27901430 chr3R 27820428..27820523 1..96 465 99 Plus
chrU 10048995 chrU 2637759..2637854 1..96 465 99 Plus
chrU 10048995 chrU 2645351..2645446 1..96 465 99 Plus
chrU 10048995 chrU 9017688..9017783 96..1 465 99 Minus
chr3LHet 2555433 chr3LHet 74221..74316 96..1 465 99 Minus
chr2L 23010047 chr2L 347960..348055 96..1 465 99 Minus
chr2L 23010047 chr2L 354988..355083 96..1 465 99 Minus
chr2L 23010047 chr2L 1220409..1220504 1..96 465 99 Plus
chr2L 23010047 chr2L 1679202..1679297 1..96 465 99 Plus
chr2L 23010047 chr2L 10155267..10155362 96..1 465 99 Minus
chr2L 23010047 chr2L 10162279..10162374 96..1 465 99 Minus
chr2L 23010047 chr2L 11712559..11712654 1..96 465 99 Plus
chr2L 23010047 chr2L 11719571..11719666 1..96 465 99 Plus
chr2L 23010047 chr2L 15445122..15445217 1..96 465 99 Plus
chr2L 23010047 chr2L 15452135..15452230 1..96 465 99 Plus
chr2L 23010047 chr2L 19346394..19346489 1..96 465 99 Plus
chr2L 23010047 chr2L 20301576..20301671 96..1 465 99 Minus
chr2L 23010047 chr2L 20308588..20308683 96..1 465 99 Minus
chr2L 23010047 chr2L 20575005..20575100 1..96 465 99 Plus
chr2L 23010047 chr2L 20582017..20582112 1..96 465 99 Plus
chr2L 23010047 chr2L 21346431..21346526 1..96 465 99 Plus
chr2L 23010047 chr2L 21353447..21353542 1..96 465 99 Plus
chr3L 24539361 chr3L 8490327..8490422 96..1 465 99 Minus
chr3L 24539361 chr3L 8497338..8497433 96..1 465 99 Minus
chr3L 24539361 chr3L 22545036..22545131 1..96 465 99 Plus
chr3L 24539361 chr3L 22606151..22606246 96..1 465 99 Minus
chr3L 24539361 chr3L 22613145..22613240 96..1 465 99 Minus
chr2R 21145070 chr2R 14375299..14375394 1..96 465 99 Plus
chr2R 21145070 chr2R 15603419..15603514 1..96 465 99 Plus
chr2R 21145070 chr2R 15610432..15610527 1..96 465 99 Plus
chrX 22417052 chrX 21401751..21401846 96..1 465 99 Minus
chrX 22417052 chrX 21408765..21408860 96..1 465 99 Minus
chr3RHet 2517486 chr3RHet 845967..846062 1..96 465 99 Plus
chr3RHet 2517486 chr3RHet 852980..853075 1..96 465 99 Plus
chr3R 27901430 chr3R 15529740..15529835 1..96 450 97.9 Plus
chr3R 27901430 chr3R 15536752..15536847 1..96 450 97.9 Plus
chrU 10048995 chrU 8600422..8600517 96..1 450 97.9 Minus
chr2L 23010047 chr2L 12932584..12932679 96..1 450 97.9 Minus
chr2L 23010047 chr2L 12939595..12939690 96..1 450 97.9 Minus
chr2RHet 3288813 chr2RHet 361701..361796 96..1 435 96.9 Minus
chr2RHet 3288813 chr2RHet 368712..368807 96..1 435 96.9 Minus
chr2L 23010047 chr2L 1686211..1686294 1..84 420 100 Plus
chr3R 27901430 chr3R 21908108..21908181 759..686 355 98.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:57:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:18:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26077472..26078682 2808..1595 5900 99.3 Minus
3R 32079331 3R 26076589..26077237 3456..2807 3185 99.7 Minus
3R 32079331 3R 26096189..26096567 505..127 1835 98.9 Minus
3R 32079331 3R 26081890..26082192 1150..848 1515 100 Minus
3R 32079331 3R 26079552..26079738 1333..1147 935 100 Minus
3R 32079331 3R 26088166..26088349 687..504 920 100 Minus
3R 32079331 3R 26078808..26078961 1594..1441 770 100 Minus
3R 32079331 3R 26079367..26079473 1440..1334 520 99.1 Minus
3R 32079331 3R 15619091..15619186 1..96 480 100 Plus
3R 32079331 3R 15626107..15626202 1..96 480 100 Plus
U 3151297 U 1149843..1149941 1..99 480 99 Plus
Y 3667352 Y 728582..728680 99..1 480 99 Minus
2L 23513712 2L 1227497..1227601 1..105 480 97.1 Plus
2L 23513712 2L 19354862..19354959 1..98 475 99 Plus
3R 32079331 3R 32005364..32005460 1..97 470 99 Plus
U 3151297 U 858907..859003 97..1 470 99 Minus
3L 28110227 3L 22563142..22563238 1..97 470 99 Plus
2R 25286936 2R 18495193..18495289 1..97 470 99 Plus
3R 32079331 3R 17575689..17575784 1..96 465 99 Plus
3R 32079331 3R 17582699..17582794 1..96 465 99 Plus
3R 32079331 3R 30679877..30679972 1..96 465 99 Plus
3R 32079331 3R 30686890..30686985 1..96 465 99 Plus
3R 32079331 3R 31998352..31998447 1..96 465 99 Plus
3R 32079331 3R 2150450..2150545 1..96 465 99 Plus
3R 32079331 3R 2143438..2143533 1..96 465 99 Plus
U 3151297 U 1347897..1347992 96..1 465 99 Minus
Y 3667352 Y 735598..735693 96..1 465 99 Minus
2L 23513712 2L 347941..348036 96..1 465 99 Minus
2L 23513712 2L 354969..355064 96..1 465 99 Minus
2L 23513712 2L 1220487..1220582 1..96 465 99 Plus
2L 23513712 2L 1679335..1679430 1..96 465 99 Plus
2L 23513712 2L 1686344..1686439 1..96 465 99 Plus
2L 23513712 2L 10156377..10156472 96..1 465 99 Minus
2L 23513712 2L 10163389..10163484 96..1 465 99 Minus
2L 23513712 2L 11713865..11713960 1..96 465 99 Plus
2L 23513712 2L 11720877..11720972 1..96 465 99 Plus
2L 23513712 2L 15446409..15446504 1..96 465 99 Plus
2L 23513712 2L 15453422..15453517 1..96 465 99 Plus
2L 23513712 2L 19347846..19347941 1..96 465 99 Plus
2L 23513712 2L 20303216..20303311 96..1 465 99 Minus
2L 23513712 2L 20310228..20310323 96..1 465 99 Minus
2L 23513712 2L 20576577..20576672 1..96 465 99 Plus
2L 23513712 2L 20583589..20583684 1..96 465 99 Plus
2L 23513712 2L 21347908..21348003 1..96 465 99 Plus
2L 23513712 2L 21354924..21355019 1..96 465 99 Plus
3L 28110227 3L 8498352..8498447 96..1 465 99 Minus
3L 28110227 3L 8505363..8505458 96..1 465 99 Minus
3L 28110227 3L 22556128..22556223 1..96 465 99 Plus
3L 28110227 3L 22617245..22617340 96..1 465 99 Minus
3L 28110227 3L 22624239..22624334 96..1 465 99 Minus
2R 25286936 2R 336251..336346 96..1 465 99 Minus
2R 25286936 2R 343261..343356 96..1 465 99 Minus
2R 25286936 2R 18488181..18488276 1..96 465 99 Plus
2R 25286936 2R 19716213..19716308 1..96 465 99 Plus
2R 25286936 2R 19723226..19723321 1..96 465 99 Plus
X 23542271 X 21536593..21536688 96..1 465 99 Minus
X 23542271 X 21543607..21543702 96..1 465 99 Minus
3R 32079331 3R 19705877..19705972 1..96 450 97.9 Plus
3R 32079331 3R 19712889..19712984 1..96 450 97.9 Plus
3R 32079331 3R 26084071..26084163 849..757 450 98.9 Minus
U 3151297 U 869800..869895 96..1 450 97.9 Minus
2L 23513712 2L 12940916..12941011 96..1 450 97.9 Minus
2L 23513712 2L 12933905..12934000 96..1 450 97.9 Minus
2R 25286936 2R 1235034..1235129 96..1 435 96.9 Minus
2R 25286936 2R 1242045..1242140 96..1 435 96.9 Minus
3R 32079331 3R 26085109..26085182 759..686 355 98.6 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:30:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 25818303..25819513 2808..1595 5910 99.2 Minus
3R 31820162 3R 25817420..25818068 3456..2807 3195 99.6 Minus
3R 31820162 3R 25837020..25837398 505..127 1835 98.9 Minus
3R 31820162 3R 25822721..25823023 1150..848 1515 100 Minus
3R 31820162 3R 25820383..25820569 1333..1147 935 100 Minus
3R 31820162 3R 25828997..25829180 687..504 920 100 Minus
3R 31820162 3R 25819639..25819792 1594..1441 770 100 Minus
3R 31820162 3R 25820198..25820304 1440..1334 520 99 Minus
3R 31820162 3R 15366938..15367033 1..96 480 100 Plus
3R 31820162 3R 15359922..15360017 1..96 480 100 Plus
2L 23513712 2L 1227497..1227601 1..105 480 97.1 Plus
Y 3410481 Y 1003729..1003827 99..1 480 98.9 Minus
2L 23513712 2L 19354862..19354959 1..98 475 98.9 Plus
3R 31820162 3R 31746195..31746291 1..97 470 98.9 Plus
2R 25260384 2R 18496392..18496488 1..97 470 98.9 Plus
3L 28103327 3L 22556242..22556338 1..97 470 98.9 Plus
3R 31820162 3R 30427721..30427816 1..96 465 98.9 Plus
3R 31820162 3R 1941016..1941111 1..96 465 98.9 Plus
3R 31820162 3R 1948028..1948123 1..96 465 98.9 Plus
3R 31820162 3R 30420708..30420803 1..96 465 98.9 Plus
3R 31820162 3R 17323530..17323625 1..96 465 98.9 Plus
3R 31820162 3R 17316520..17316615 1..96 465 98.9 Plus
3R 31820162 3R 31739183..31739278 1..96 465 98.9 Plus
2L 23513712 2L 19347846..19347941 1..96 465 98.9 Plus
2L 23513712 2L 15453422..15453517 1..96 465 98.9 Plus
2L 23513712 2L 15446409..15446504 1..96 465 98.9 Plus
2L 23513712 2L 21354924..21355019 1..96 465 98.9 Plus
2L 23513712 2L 21347908..21348003 1..96 465 98.9 Plus
2L 23513712 2L 20583589..20583684 1..96 465 98.9 Plus
2L 23513712 2L 20576577..20576672 1..96 465 98.9 Plus
2L 23513712 2L 11720877..11720972 1..96 465 98.9 Plus
2L 23513712 2L 11713865..11713960 1..96 465 98.9 Plus
2L 23513712 2L 1686344..1686439 1..96 465 98.9 Plus
2L 23513712 2L 1679335..1679430 1..96 465 98.9 Plus
2L 23513712 2L 1220487..1220582 1..96 465 98.9 Plus
2L 23513712 2L 20310228..20310323 96..1 465 98.9 Minus
2L 23513712 2L 20303216..20303311 96..1 465 98.9 Minus
2L 23513712 2L 10163389..10163484 96..1 465 98.9 Minus
2L 23513712 2L 10156377..10156472 96..1 465 98.9 Minus
2L 23513712 2L 354969..355064 96..1 465 98.9 Minus
2L 23513712 2L 347941..348036 96..1 465 98.9 Minus
2R 25260384 2R 19724425..19724520 1..96 465 98.9 Plus
2R 25260384 2R 19717412..19717507 1..96 465 98.9 Plus
2R 25260384 2R 18489380..18489475 1..96 465 98.9 Plus
2R 25260384 2R 343261..343356 96..1 465 98.9 Minus
2R 25260384 2R 336251..336346 96..1 465 98.9 Minus
3L 28103327 3L 22549228..22549323 1..96 465 98.9 Plus
3L 28103327 3L 22617339..22617434 96..1 465 98.9 Minus
3L 28103327 3L 22610345..22610440 96..1 465 98.9 Minus
3L 28103327 3L 8498463..8498558 96..1 465 98.9 Minus
3L 28103327 3L 8491452..8491547 96..1 465 98.9 Minus
Y 3410481 Y 1010745..1010840 96..1 465 98.9 Minus
X 23527363 X 21528699..21528794 96..1 465 98.9 Minus
X 23527363 X 21521685..21521780 96..1 465 98.9 Minus
Unimproved_211000022278755_248_946 698 Unimproved_211000022278755_248_946 202..297 96..1 465 98.9 Minus
3R 31820162 3R 19453720..19453815 1..96 450 97.9 Plus
3R 31820162 3R 19446708..19446803 1..96 450 97.9 Plus
3R 31820162 3R 25824902..25824994 849..757 450 98.9 Minus
2L 23513712 2L 12940916..12941011 96..1 450 97.9 Minus
2L 23513712 2L 12933905..12934000 96..1 450 97.9 Minus
2R 25260384 2R 1242045..1242140 96..1 435 96.8 Minus
2R 25260384 2R 1235034..1235129 96..1 435 96.8 Minus
3R 31820162 3R 25825940..25826013 759..686 355 98.6 Minus
3R 31820162 3R 25838854..25838883 126..97 150 100 Minus
Blast to na_te.dros performed 2019-03-16 16:18:29
Subject Length Description Subject Range Query Range Score Percent Strand
blood 7410 blood BLOOD 7410bp 7315..7410 1..96 471 99 Plus
blood 7410 blood BLOOD 7410bp 304..398 1..96 450 97.9 Plus
Rt1c 5443 Rt1c RT1C 5443bp 1204..1284 2798..2883 140 65.1 Plus

IP08837.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:19:28 Download gff for IP08837.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 21921017..21921046 97..126 100 == Minus
chr3R 21902358..21902464 1334..1440 100 <- Minus
chr3R 21899581..21900227 2809..3453 94 <- Minus
chr3R 21900464..21901674 1595..2808 97 <- Minus
chr3R 21901800..21901953 1441..1594 100 <- Minus
chr3R 21902543..21902727 1149..1333 100 <- Minus
chr3R 21904891..21905190 849..1148 100 <- Minus
chr3R 21907071..21907160 759..848 100 <- Minus
chr3R 21908109..21908179 688..758 98 <- Minus
chr3R 21911158..21911339 506..687 100 <- Minus
chr3R 21919181..21919200 486..505 100 == Minus
chr3R 21919286..21919351 335..400 98 == Minus
chr3R 21919460..21919559 127..226 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:52:53 Download gff for IP08837.complete
Subject Subject Range Query Range Percent Splice Strand
dys-RC 71..2754 127..2813 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:07:13 Download gff for IP08837.complete
Subject Subject Range Query Range Percent Splice Strand
dys-RD 71..2763 127..2822 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:07:29 Download gff for IP08837.complete
Subject Subject Range Query Range Percent Splice Strand
dys-RD 71..2763 127..2822 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:52:10 Download gff for IP08837.complete
Subject Subject Range Query Range Percent Splice Strand
dys-RC 71..2754 127..2813 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:25:00 Download gff for IP08837.complete
Subject Subject Range Query Range Percent Splice Strand
dys-RD 71..2763 127..2822 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:52:53 Download gff for IP08837.complete
Subject Subject Range Query Range Percent Splice Strand
dys-RB 1..3353 97..3453 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:07:13 Download gff for IP08837.complete
Subject Subject Range Query Range Percent Splice Strand
dys-RB 1..3353 97..3453 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:07:29 Download gff for IP08837.complete
Subject Subject Range Query Range Percent Splice Strand
dys-RB 1..3353 97..3453 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:52:10 Download gff for IP08837.complete
Subject Subject Range Query Range Percent Splice Strand
dys-RB 1..3353 97..3453 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:25:00 Download gff for IP08837.complete
Subject Subject Range Query Range Percent Splice Strand
dys-RB 1..3353 97..3453 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:19:28 Download gff for IP08837.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26098023..26098052 97..126 100 == Minus
3R 26078808..26078961 1441..1594 100 <- Minus
3R 26079367..26079473 1334..1440 99 <- Minus
3R 26079552..26079736 1149..1333 100 <- Minus
3R 26076592..26077235 2809..3453 99 <- Minus
3R 26077472..26078682 1595..2808 99 <- Minus
3R 26081892..26082191 849..1148 100 <- Minus
3R 26084072..26084161 759..848 98 <- Minus
3R 26085110..26085180 688..758 98 <- Minus
3R 26088166..26088347 506..687 100 <- Minus
3R 26096189..26096567 127..505 98 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:19:28 Download gff for IP08837.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26098023..26098052 97..126 100 == Minus
3R 26078808..26078961 1441..1594 100 <- Minus
3R 26079367..26079473 1334..1440 99 <- Minus
3R 26079552..26079736 1149..1333 100 <- Minus
3R 26076592..26077235 2809..3453 99 <- Minus
3R 26077472..26078682 1595..2808 99 <- Minus
3R 26081892..26082191 849..1148 100 <- Minus
3R 26084072..26084161 759..848 98 <- Minus
3R 26085110..26085180 688..758 98 <- Minus
3R 26088166..26088347 506..687 100 <- Minus
3R 26096189..26096567 127..505 98 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:19:28 Download gff for IP08837.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26098023..26098052 97..126 100 == Minus
3R 26078808..26078961 1441..1594 100 <- Minus
3R 26079367..26079473 1334..1440 99 <- Minus
3R 26079552..26079736 1149..1333 100 <- Minus
3R 26076592..26077235 2809..3453 99 <- Minus
3R 26077472..26078682 1595..2808 99 <- Minus
3R 26081892..26082191 849..1148 100 <- Minus
3R 26084072..26084161 759..848 98 <- Minus
3R 26085110..26085180 688..758 98 <- Minus
3R 26088166..26088347 506..687 100 <- Minus
3R 26096189..26096567 127..505 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:07:29 Download gff for IP08837.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21909794..21909883 759..848 98 <- Minus
arm_3R 21910832..21910902 688..758 98 <- Minus
arm_3R 21902314..21902957 2809..3453 99 <- Minus
arm_3R 21903194..21904404 1595..2808 99 <- Minus
arm_3R 21904530..21904683 1441..1594 100 <- Minus
arm_3R 21905089..21905195 1334..1440 99 <- Minus
arm_3R 21905274..21905458 1149..1333 100 <- Minus
arm_3R 21907614..21907913 849..1148 100 <- Minus
arm_3R 21913888..21914069 506..687 100 <- Minus
arm_3R 21921911..21922289 127..505 98 <- Minus
arm_3R 21923745..21923774 97..126 100 == Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:27:04 Download gff for IP08837.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25824903..25824992 759..848 98 <- Minus
3R 25825941..25826011 688..758 98 <- Minus
3R 25828997..25829178 506..687 100 <- Minus
3R 25817423..25818066 2809..3453 99 <- Minus
3R 25818303..25819513 1595..2808 99 <- Minus
3R 25819639..25819792 1441..1594 100 <- Minus
3R 25820198..25820304 1334..1440 99 <- Minus
3R 25820383..25820567 1149..1333 100 <- Minus
3R 25822723..25823022 849..1148 100 <- Minus
3R 25837020..25837398 127..505 98 <- Minus
3R 25838854..25838883 97..126 100 == Minus

IP08837.hyp Sequence

Translation from 98 to 2821

> IP08837.hyp
RVPPHPHPNQLVTNICKRAIDDMYADNKRGLDKVTAATPPTHALQQQQQQ
QHPHQQQQHLQHVLQLQQQQQQHLQQQQHHLQHQMHTHHNFQQHETSPTV
SQQQHMQQQQPQTTQQQHATQQQQQQQQQTAGMFTRFDANKSTKGASKMR
RDLINAEIANLRDLLPLPQSTRQRLSQLQLMALVCVYVRKANYFQQVFKR
HNAMHHLHHQTATPNIGFSKALSGFLMMLTQNGKLLYISDNAAEYLGHSM
EDLLIHGDSVYDIIDKQDHANIQAELNRNVPPQPGGSSQASSGGAGGAGG
AGDSTSSNGSAAGAGGAGGASSLEGEHRMFLCRMNVSRNARRQMRFGDQK
VVLVQGHYLSFLPLCSRNEPVFLATCTPIAMPETRECVVQGATNVFTTIH
SMDMKIAHIDKNGEFHLGYDKSTLQGTSWYNLIHSDNLTEAQKKHSLIIQ
SEQDRSCILLVRMQRSSGEYTWVHVVLQVRDSPDSTQQPVIVCTNQVLND
REASIMLANSWLYHYYTVQSKIQFGMPLDSGIRVPPGTPSSGYYSPHSSH
PPATPGGATPNLGIASSFGPHHHPHHSHHPHHHHHHHHPATAYHHHPHMG
TYGGVYHAKAAIELKEDQPLFCFQEPVDYSQVNSHVNPPNATSTPNPPIS
KSSTPPPPKKRARKLEPLYLHAERSPAAAITPEPDCYAIHTHPAAAYATS
SVVSSDASVIYATIVPTRPRLPNKSLPPDPADFIEQWNPSPPWSESAQKA
SLDSFGSSHELSPCITTTPPTPTSATPHQSGLGTTQTIGPAFSFEWMSDP
LVPVTYQQWPPTGDHHQHLSQHLSQSQNHQNPLQQQQNEQLLLGQQPHLH
QQHQHLALHHGRGEHSLEGESQGVVVVPPIPISIPIPTATGHGDAGEPVE
DRDPKN*

IP08837.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:57:49
Subject Length Description Subject Range Query Range Score Percent Strand
dys-PD 920 CG32474-PD 24..920 10..906 4842 99.9 Plus
dys-PC 917 CG32474-PC 24..916 10..902 4818 99.9 Plus
dys-PB 884 CG32474-PB 1..884 23..906 4778 100 Plus
trh-PC 966 CG42865-PC 38..563 77..549 311 22.7 Plus
trh-PG 923 CG42865-PG 65..520 115..549 305 24.3 Plus

IP08837.pep Sequence

Translation from 164 to 2821

> IP08837.pep
MYADNKRGLDKVTAATPPTHALQQQQQQQHPHQQQQHLQHVLQLQQQQQQ
HLQQQQHHLQHQMHTHHNFQQHETSATVSQQQHMQQQQPQTTQQQHATQQ
QQQQQQHTAGMFTRFDANKSTKGASKMRRDLINAEIANLRDLLPLPQSTR
QRLSQLQLMALVCVYVRKANYFQQVFKRHNAMHHLHHQTATPNIGFSKAL
SGFLMMLTQNGKLLYISDNAAEYLGHSMEDLLIHGDSVYDIIDKQDHANI
QAELNRNVPPQPGGSSQASSGGAGGAGGAGDSTSSNGSAAGAGGAGGASS
LEGEHRMFLCRMNVSRNARRQMRFGDQKVVLVQGHYLSFLPLCSRNEPVF
LATCTPIAMPETRECVVQGATNVFTTIHSMDMKIAHIDKNGEFHLGYDKS
TLQGTSWYNLIHSDNLTEAQKKHSLIIQSEQDRSCILLVRMQRSSGEYTW
VHVVLQVRDSPDSTQQPVIVCTNQVLNDREASIMLANSWLYHYYTVQSKI
QFGMPLDSGIRVPPGTPSSGYYSPHSSHPPATPGGATPNLGIASSFGPHH
HPHHSHHPHHHHHHHHPATAYHHHPHMGTYGGVYHAKAAIELKEDQPLFC
FQEPVDYSQVNSHVNPPNATSTPNPPISKSSTPPPPKKRARKLEPLYLHA
ERSPAAAITPEPDCYAIHTHPAAAYATSSVVSSDASVIYATIVPTRPRLP
NKSLPPDPADFIEQWNPSPPWSESAQKASLDSFGSSHELSPCITTTPPTP
TSATPHQSGLGTTQTIGPAFSFEWMSDPLVPVTYQQWPPTGDHHQHLSQH
LSQSQNHQNPLQQQQQHEQLLLGQQPHLHQQHQHLALHHGRGEHSLEGES
QGVVVVPPIPISIPIPTATGHGDAGEPVEDRDPKN*

IP08837.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 15:38:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16506-PA 911 GF16506-PA 1..813 1..806 3093 85 Plus
Dana\GF16518-PA 1071 GF16518-PA 34..449 125..533 252 24.5 Plus
Dana\GF17581-PA 746 GF17581-PA 26..391 118..487 199 21.6 Plus
Dana\GF18433-PA 648 GF18433-PA 11..383 114..473 166 21.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 15:38:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12197-PA 803 GG12197-PA 1..543 1..539 2060 88.5 Plus
Dere\GG12197-PA 803 GG12197-PA 520..802 601..881 1029 94.7 Plus
Dere\GG19993-PA 1057 GG19993-PA 34..424 125..533 285 26.1 Plus
Dere\GG14662-PA 961 GG14662-PA 88..516 118..487 219 24 Plus
Dere\GG19445-PA 698 GG19445-PA 26..391 118..487 184 21.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 15:38:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18137-PA 906 GH18137-PA 158..837 110..798 2666 81.3 Plus
Dgri\GH23748-PA 490 GH23748-PA 85..487 118..487 216 22.4 Plus
Dgri\GH18379-PA 774 GH18379-PA 26..391 118..487 209 22.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:18:27
Subject Length Description Subject Range Query Range Score Percent Strand
dysf-PD 920 CG32474-PD 37..920 1..885 4748 99.5 Plus
dysf-PB 884 CG32474-PB 1..884 1..885 4748 99.5 Plus
dysf-PC 917 CG32474-PC 37..916 1..881 4724 99.5 Plus
trh-PC 966 CG42865-PC 38..563 55..527 311 22.7 Plus
trh-PG 923 CG42865-PG 65..520 93..527 304 24.3 Plus
trh-PF 989 CG42865-PF 38..586 55..527 299 22.1 Plus
trh-PB 929 CG6883-PB 65..526 93..527 298 24 Plus
trh-PE 952 CG42865-PE 65..549 93..527 286 23.3 Plus
trh-PA 958 CG6883-PA 65..555 93..527 285 23.3 Plus
trh-PD 1022 CG42865-PD 65..555 93..527 285 23.3 Plus
ss-PA 884 CG6993-PA 34..424 125..533 280 26.1 Plus
ss-PD 1015 CG6993-PD 34..424 125..533 280 26.1 Plus
ss-PC 1015 CG6993-PC 34..424 125..533 280 26.1 Plus
Pdp1-PJ 633 CG17888-PJ 124..216 20..109 215 53 Plus
Pdp1-PD 647 CG17888-PD 124..216 20..109 215 53 Plus
sim-PB 664 CG7771-PB 3..367 119..487 198 21.1 Plus
sim-PC 675 CG7771-PC 14..378 119..487 198 21.1 Plus
sim-PA 688 CG7771-PA 27..391 119..487 198 21.1 Plus
btd-PA 644 CG12653-PA 14..90 28..107 197 51.8 Plus
Unr-PC 1032 CG7015-PC 54..138 25..118 195 51.1 Plus
Unr-PA 1039 CG7015-PA 54..138 25..118 195 51.1 Plus
Unr-PE 1057 CG7015-PE 54..138 25..118 195 51.1 Plus
Unr-PD 1057 CG7015-PD 54..138 25..118 195 51.1 Plus
Unr-PB 1057 CG7015-PB 54..138 25..118 195 51.1 Plus
CG44085-PH 756 CG44085-PH 351..451 15..128 194 45.6 Plus
CG44085-PL 833 CG44085-PL 428..528 15..128 194 45.6 Plus
CG44085-PI 833 CG44085-PI 428..528 15..128 194 45.6 Plus
CG44085-PC 836 CG44085-PC 428..528 15..128 194 45.6 Plus
CG44085-PM 864 CG44085-PM 313..413 15..128 194 45.6 Plus
CG44085-PF 902 CG44085-PF 351..451 15..128 194 45.6 Plus
CG44085-PD 918 CG44085-PD 351..451 15..128 194 45.6 Plus
CG44085-PG 942 CG44085-PG 351..451 15..128 194 45.6 Plus
CG44085-PK 979 CG44085-PK 428..528 15..128 194 45.6 Plus
CG44085-PJ 979 CG44085-PJ 428..528 15..128 194 45.6 Plus
CG44085-PN 1007 CG44085-PN 428..528 15..128 194 45.6 Plus
CG44085-PP 2246 CG44085-PP 324..424 15..128 194 45.6 Plus
CG44085-PO 2381 CG44085-PO 313..413 15..128 194 45.6 Plus
CG43347-PD 2652 CG43347-PD 1495..1859 6..318 194 27.3 Plus
CG43347-PB 2666 CG43347-PB 1509..1873 6..318 194 27.3 Plus
CG43347-PC 2684 CG43347-PC 1527..1891 6..318 194 27.3 Plus
Smr-PF 3601 CG4013-PF 170..253 21..105 191 52.8 Plus
Smr-PE 3601 CG4013-PE 170..253 21..105 191 52.8 Plus
Smr-PD 3601 CG4013-PD 170..253 21..105 191 52.8 Plus
Smr-PG 3607 CG4013-PG 176..259 21..105 191 52.8 Plus
fs(1)h-PB 2038 CG2252-PB 1496..1569 21..109 187 53.9 Plus
fs(1)h-PG 2046 CG2252-PG 1504..1577 21..109 187 53.9 Plus
Lim3-PF 520 CG10699-PF 9..87 17..107 185 47.8 Plus
Lim3-PD 520 CG10699-PD 9..87 17..107 185 47.8 Plus
Lim3-PC 520 CG10699-PC 9..87 17..107 185 47.8 Plus
Lim3-PB 520 CG10699-PB 9..87 17..107 185 47.8 Plus
Lim3-PG 555 CG10699-PG 9..87 17..107 185 47.8 Plus
fs(1)h-PB 2038 CG2252-PB 1454..1554 27..106 176 44.4 Plus
fs(1)h-PG 2046 CG2252-PG 1462..1562 27..106 176 44.4 Plus
Smr-PF 3601 CG4013-PF 56..155 24..109 174 46.6 Plus
Smr-PE 3601 CG4013-PE 56..155 24..109 174 46.6 Plus
Smr-PD 3601 CG4013-PD 56..155 24..109 174 46.6 Plus
Smr-PG 3607 CG4013-PG 56..155 24..109 174 46.6 Plus
Smr-PG 3607 CG4013-PG 52..224 18..188 171 31.9 Plus
Pdp1-PJ 633 CG17888-PJ 119..229 19..137 166 38.5 Plus
Pdp1-PD 647 CG17888-PD 119..229 19..137 166 38.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 15:38:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22899-PA 906 GI22899-PA 135..826 109..798 2614 80.3 Plus
Dmoj\GI23647-PA 1064 GI23647-PA 34..425 125..533 283 26 Plus
Dmoj\GI23369-PA 779 GI23369-PA 26..391 118..487 202 21.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 15:38:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22009-PA 923 GL22009-PA 1..825 1..804 2966 84.4 Plus
Dper\GL22243-PA 1100 GL22243-PA 34..424 125..533 280 26.4 Plus
Dper\GL24392-PA 764 GL24392-PA 26..391 118..487 198 21.6 Plus
Dper\GL12493-PA 646 GL12493-PA 11..383 114..473 165 21.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 15:38:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16931-PA 927 GA16931-PA 1..926 1..881 2927 77.3 Plus
Dpse\GA16931-PB 803 GA16931-PB 1..802 127..881 2765 78.6 Plus
Dpse\GA20013-PC 1142 GA20013-PC 24..414 125..533 285 26.2 Plus
Dpse\GA26599-PA 767 GA26599-PA 26..391 118..487 199 21.6 Plus
Dpse\GA19928-PA 982 GA19928-PA 80..508 118..480 194 21.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 15:38:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10194-PA 880 GM10194-PA 1..879 1..881 4608 98.9 Plus
Dsec\trh-PA 876 GM14278-PA 88..514 118..487 225 23.7 Plus
Dsec\GM15436-PA 1077 GM15436-PA 34..451 125..533 214 23.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 15:38:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18145-PA 644 GD18145-PA 16..602 112..697 3051 97.1 Plus
Dsim\GD24448-PA 113 GD24448-PA 1..113 1..114 475 96.5 Plus
Dsim\GD25707-PA 958 GD25707-PA 88..516 118..487 219 24 Plus
Dsim\GD20292-PA 1075 GD20292-PA 34..453 125..533 217 23.9 Plus
Dsim\GD18883-PA 697 GD18883-PA 26..391 118..487 186 21.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 15:39:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23312-PA 877 GJ23312-PA 129..876 109..881 2724 76.5 Plus
Dvir\GJ23490-PA 1099 GJ23490-PA 34..427 125..533 287 26.5 Plus
Dvir\sim-PA 761 GJ10364-PA 26..391 118..487 207 22.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 15:39:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12795-PA 910 GK12795-PA 1..909 1..881 2712 72.2 Plus
Dwil\GK13504-PA 1031 GK13504-PA 34..424 125..533 282 26.6 Plus
Dwil\GK22407-PA 743 GK22407-PA 26..391 118..487 202 21.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 15:39:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10639-PA 897 GE10639-PA 1..897 1..885 4561 97 Plus
Dyak\GE26316-PA 1062 GE26316-PA 34..424 125..533 286 26.5 Plus
Dyak\GE21022-PA 958 GE21022-PA 88..516 118..487 219 24 Plus
Dyak\GE26246-PA 699 GE26246-PA 26..391 118..487 179 21.4 Plus